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The map label for this gene is rhaS [C]

Identifier: 187735502

GI number: 187735502

Start: 1198815

End: 1199711

Strand: Direct

Name: rhaS [C]

Synonym: Amuc_1007

Alternate gene names: 187735502

Gene position: 1198815-1199711 (Clockwise)

Preceding gene: 187735494

Following gene: 187735503

Centisome position: 45.0

GC content: 53.29

Gene sequence:

>897_bases
ATGGGCATTATTCTGAACATGGATTCCGTAGGGGACTACAACTCCTTTTTGGGGCAGGAAACGCTGCACTCGCTGGTCAG
CGTCGTTGATTTTTCCAGGGTCCCGCCGCTGCGGCATGCCCGCAAGGCTTACGGGTTCTATGCCGTTTTCCTGAAGGACC
TGAAATGCGGAGACCTGCGGTACGGAAGACATTATTATGATTACCAGGAGGGAACTCTTGTCTTCGTATCTCCCGGCCAG
GTGCTGGGCAATGATGACAACGGGGAATATTTCCGGGTAGAGGGCCATGCCCTCCTGTTCCATCCCGATTTGCTCCGCGG
CACCTCCCTGGGACGCAGGATGAAGGACTATACCTTTTTTTCCTATGACGCTTCCGAGTCCCTCCATATGTCGGAGAGGG
AAAGGAATTTATTCCTGAACGGCCTGACGGAGATCCGGGAGGAACTGGAACGGGGCGTTGACCGGCATACCAAGTCCATC
GTGACGGCCAACATCGAAGTTCTCCTGAACCACTGCATGCGTTTTTACGACCGCCAGTTCATTACCCGCGAGAATGTGAA
CAGGGATGTGCTGACGGAGTTCGAACGTCTGCTGGATTCCTACTTCGAGGGAGACAAGCCTCAGGAATGGGGGCTGCCCT
ATGTGCAGTATTTCGCGGATGAACTGCATCTCTCCGCCAACTATTTCGGTGATCTCGTCAAGAAAGAGACGGGAAAAACT
CCCCAGGAGCATATCCATATCAAGCTGGTGGACAAAGCCAAGGAGCTCCTTTGCGCCACCAATAAATCCGTTAGTGAAAT
CGCCTATGAACTGGGGTTCAAGTATCCCCATCACCTGAGCCGCATGTTCAAGAAGAATACGGGATATTCCCCGAACGAGT
TCAGGTTGTCGGCGTGA

Upstream 100 bases:

>100_bases
GACGGATTACAGGTTTTGCTACCATGATTACAGGTTCCCGGAATGAGCTGGATAGCCGGCTCCCTTCCTGCTATGCTCCG
GTCAAAAGCAGAGAAAGGGC

Downstream 100 bases:

>100_bases
CGCCCGCTCCCTGTCGCCGGACGGCCTGCGGCATTCTGTCTGGAGCGGAACGGTTCGTTCCGGATTGATAGCCGGGCCGG
GAATACAGAAAATAATCTTC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; AraC Family Transcriptional Regulator; Transcriptional Regulator Arac Family; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator AraC Family Protein; Transcription Regulator; Transcriptional Regulator AraC Type; AraC-Family Transcriptional Regulator; Two Component Transcriptional Regulator AraC Family; Bacterial Regulatory Helix-Turn-Helix Protein; Phosphomethylpyrimidine Kinase

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MGIILNMDSVGDYNSFLGQETLHSLVSVVDFSRVPPLRHARKAYGFYAVFLKDLKCGDLRYGRHYYDYQEGTLVFVSPGQ
VLGNDDNGEYFRVEGHALLFHPDLLRGTSLGRRMKDYTFFSYDASESLHMSERERNLFLNGLTEIREELERGVDRHTKSI
VTANIEVLLNHCMRFYDRQFITRENVNRDVLTEFERLLDSYFEGDKPQEWGLPYVQYFADELHLSANYFGDLVKKETGKT
PQEHIHIKLVDKAKELLCATNKSVSEIAYELGFKYPHHLSRMFKKNTGYSPNEFRLSA

Sequences:

>Translated_298_residues
MGIILNMDSVGDYNSFLGQETLHSLVSVVDFSRVPPLRHARKAYGFYAVFLKDLKCGDLRYGRHYYDYQEGTLVFVSPGQ
VLGNDDNGEYFRVEGHALLFHPDLLRGTSLGRRMKDYTFFSYDASESLHMSERERNLFLNGLTEIREELERGVDRHTKSI
VTANIEVLLNHCMRFYDRQFITRENVNRDVLTEFERLLDSYFEGDKPQEWGLPYVQYFADELHLSANYFGDLVKKETGKT
PQEHIHIKLVDKAKELLCATNKSVSEIAYELGFKYPHHLSRMFKKNTGYSPNEFRLSA
>Mature_297_residues
GIILNMDSVGDYNSFLGQETLHSLVSVVDFSRVPPLRHARKAYGFYAVFLKDLKCGDLRYGRHYYDYQEGTLVFVSPGQV
LGNDDNGEYFRVEGHALLFHPDLLRGTSLGRRMKDYTFFSYDASESLHMSERERNLFLNGLTEIREELERGVDRHTKSIV
TANIEVLLNHCMRFYDRQFITRENVNRDVLTEFERLLDSYFEGDKPQEWGLPYVQYFADELHLSANYFGDLVKKETGKTP
QEHIHIKLVDKAKELLCATNKSVSEIAYELGFKYPHHLSRMFKKNTGYSPNEFRLSA

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34685; Mature: 34553

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIILNMDSVGDYNSFLGQETLHSLVSVVDFSRVPPLRHARKAYGFYAVFLKDLKCGDLR
CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCC
YGRHYYDYQEGTLVFVSPGQVLGNDDNGEYFRVEGHALLFHPDLLRGTSLGRRMKDYTFF
CCCEEEECCCCEEEEEECCCEECCCCCCCEEEEECCEEEECCHHHHHHHHHHHHHHCEEE
SYDASESLHMSERERNLFLNGLTEIREELERGVDRHTKSIVTANIEVLLNHCMRFYDRQF
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITRENVNRDVLTEFERLLDSYFEGDKPQEWGLPYVQYFADELHLSANYFGDLVKKETGKT
HHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PQEHIHIKLVDKAKELLCATNKSVSEIAYELGFKYPHHLSRMFKKNTGYSPNEFRLSA
HHHHEEEEEHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEECC
>Mature Secondary Structure 
GIILNMDSVGDYNSFLGQETLHSLVSVVDFSRVPPLRHARKAYGFYAVFLKDLKCGDLR
CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCC
YGRHYYDYQEGTLVFVSPGQVLGNDDNGEYFRVEGHALLFHPDLLRGTSLGRRMKDYTFF
CCCEEEECCCCEEEEEECCCEECCCCCCCEEEEECCEEEECCHHHHHHHHHHHHHHCEEE
SYDASESLHMSERERNLFLNGLTEIREELERGVDRHTKSIVTANIEVLLNHCMRFYDRQF
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITRENVNRDVLTEFERLLDSYFEGDKPQEWGLPYVQYFADELHLSANYFGDLVKKETGKT
HHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PQEHIHIKLVDKAKELLCATNKSVSEIAYELGFKYPHHLSRMFKKNTGYSPNEFRLSA
HHHHEEEEEHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA