Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735494
Identifier: 187735494
GI number: 187735494
Start: 1189934
End: 1190641
Strand: Direct
Name: 187735494
Synonym: Amuc_0997
Alternate gene names: NA
Gene position: 1189934-1190641 (Clockwise)
Preceding gene: 187735489
Following gene: 187735502
Centisome position: 44.67
GC content: 60.88
Gene sequence:
>708_bases ATGCCGACCACGCAGACATTCAGGCTTTTGCTTGCTGCCGCCCTTTTGTGCGGATGGAGTTCCTGCTGTACTCCTCCGGC GGAGGATTATATACAAAAACCTTACGTGCAGCAGCAAATGTCCGGGCTGGCTAATGCCTTCCTGGCGCTGCTGCCGCCGG ATCAGGCCGCTCTTCCCGCTGCCGGAGCGGAGGCCAGGTGGCTGGCGGACACGGCCGTGGTCCAGTCCGCCGCGATTGCC CGGGACAACAGGACTGTGCTGTTTGGCTGGCTGAACAATATTCTGGTCAATTCCAACCTGCGCGACAGGGGGCTGTGCTG GCAGGTCCAGCAGGATTTGTACCGGGACCTGCGCCGCCGCCCCGTGAAGTATTTCCGCATAGGGCTGACGATTCGAGACC GTGGAACGGGCAGGGAGCACAGTTGCGTGTATGTCAATGCCGCGGGGAAGGGATTGCAGGGCTCCATTGTTCTGGATGCC TGGAAGAACTGCGGGCATCTGGTGACGCTGACCCAGAAGGACCGGGAAGGCGGCAAATGGGAGGAGGACTGGCGGGAACC ATTTGTTTCCAAGGCCTTTCCGGAGGGCCATTCCTACGGCATGGAACATCACCTGGTCTGGCCCGGGTGGGCCAGGAAAC GCCCCATGCTGGTTCAGCGGATATTCCAGTCCGATCAGCAGAATGAGGCGAAGGCGGCCGCTGAATAA
Upstream 100 bases:
>100_bases CCGGGATGGAAAGGGGAAGGCAAGAGCCGTCAGGGCGGAGGCAGGCATTTTTGAAAGCTTTACTGGATTTTTACGCGTAG TCTGCTAGCCTTGGCGCGCC
Downstream 100 bases:
>100_bases AGGGGAAGCCTGATCCGGCAGGAATCGGCACACGGTGCTGCACCGCGGCGGTTTGCGGTATCCGCCGTTTTTAAGGAAAA TCCCGGCGAATCGGCAAATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 235; Mature: 234
Protein sequence:
>235_residues MPTTQTFRLLLAAALLCGWSSCCTPPAEDYIQKPYVQQQMSGLANAFLALLPPDQAALPAAGAEARWLADTAVVQSAAIA RDNRTVLFGWLNNILVNSNLRDRGLCWQVQQDLYRDLRRRPVKYFRIGLTIRDRGTGREHSCVYVNAAGKGLQGSIVLDA WKNCGHLVTLTQKDREGGKWEEDWREPFVSKAFPEGHSYGMEHHLVWPGWARKRPMLVQRIFQSDQQNEAKAAAE
Sequences:
>Translated_235_residues MPTTQTFRLLLAAALLCGWSSCCTPPAEDYIQKPYVQQQMSGLANAFLALLPPDQAALPAAGAEARWLADTAVVQSAAIA RDNRTVLFGWLNNILVNSNLRDRGLCWQVQQDLYRDLRRRPVKYFRIGLTIRDRGTGREHSCVYVNAAGKGLQGSIVLDA WKNCGHLVTLTQKDREGGKWEEDWREPFVSKAFPEGHSYGMEHHLVWPGWARKRPMLVQRIFQSDQQNEAKAAAE >Mature_234_residues PTTQTFRLLLAAALLCGWSSCCTPPAEDYIQKPYVQQQMSGLANAFLALLPPDQAALPAAGAEARWLADTAVVQSAAIAR DNRTVLFGWLNNILVNSNLRDRGLCWQVQQDLYRDLRRRPVKYFRIGLTIRDRGTGREHSCVYVNAAGKGLQGSIVLDAW KNCGHLVTLTQKDREGGKWEEDWREPFVSKAFPEGHSYGMEHHLVWPGWARKRPMLVQRIFQSDQQNEAKAAAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26477; Mature: 26346
Theoretical pI: Translated: 8.81; Mature: 8.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTTQTFRLLLAAALLCGWSSCCTPPAEDYIQKPYVQQQMSGLANAFLALLPPDQAALPA CCCHHHHHHHHHHHHHHCCHHCCCCCHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCC AGAEARWLADTAVVQSAAIARDNRTVLFGWLNNILVNSNLRDRGLCWQVQQDLYRDLRRR CCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC PVKYFRIGLTIRDRGTGREHSCVYVNAAGKGLQGSIVLDAWKNCGHLVTLTQKDREGGKW CCEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEHHHCCCCEEEEECCCCCCCCC EEDWREPFVSKAFPEGHSYGMEHHLVWPGWARKRPMLVQRIFQSDQQNEAKAAAE HHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCHHHCCC >Mature Secondary Structure PTTQTFRLLLAAALLCGWSSCCTPPAEDYIQKPYVQQQMSGLANAFLALLPPDQAALPA CCHHHHHHHHHHHHHHCCHHCCCCCHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCC AGAEARWLADTAVVQSAAIARDNRTVLFGWLNNILVNSNLRDRGLCWQVQQDLYRDLRRR CCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC PVKYFRIGLTIRDRGTGREHSCVYVNAAGKGLQGSIVLDAWKNCGHLVTLTQKDREGGKW CCEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEHHHCCCCEEEEECCCCCCCCC EEDWREPFVSKAFPEGHSYGMEHHLVWPGWARKRPMLVQRIFQSDQQNEAKAAAE HHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA