Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is dtd
Identifier: 187735479
GI number: 187735479
Start: 1167149
End: 1167601
Strand: Direct
Name: dtd
Synonym: Amuc_0978
Alternate gene names: 187735479
Gene position: 1167149-1167601 (Clockwise)
Preceding gene: 187735478
Following gene: 187735485
Centisome position: 43.81
GC content: 57.62
Gene sequence:
>453_bases GTGAGGCTGGTTATTCAGCGTGTCAGTAAGGCCGCCGTTCATATCGGCGGTGTTTGTGCGGGGGCCGTGGGGCCCGGTCT GCTGATTCTGGCGGGCATTGAAGAGGCGGATACGGAAGAAGATGTGCGCTGGCTCGCCAACAAGGCGGCGGCCATGCGCA TTTTTTCCGACGCGGACGGAAAGATGAATCTTTCCGTAAGGGAAGTGAGTGGAAGCGTGTTGGTGGTGAGCCAGTTTACG CTGCATGCCTCCACCCGGAAAGGGAACAGGCCCTCTTTCATCCGCGCCGCGAGGCCTGAGCGGGCCATTCCCCTGTATGA GCTGTTTAAGAAGGAATTGGCGTCTTTGCTGGAAGGCAGGGTGGAAAGCGGCGAATTCGGCGCGGATATGCAGGTTTCCC TGATTAACGACGGCCCGGTGACTATTTTCATGGATTCCAGGAAAAGGGAATGA
Upstream 100 bases:
>100_bases CGCCTGGGTTTTATCTGAGCCGGCAGGACTGCAATGAACTGGCCATGCTGACCAGGCCGGGAACGAAGGTGACTATCCTG AGGGGGAAAGGAGAGGAACC
Downstream 100 bases:
>100_bases GAGAAAGGATCTTATATATTTAACTTTGCCCCGGTTTCCTGCTTTCTCTCTATCTCCATATAAACATAGAAAAATATTGC CGATAGATCTGTTGCTCCTC
Product: D-tyrosyl-tRNA(Tyr) deacylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 150; Mature: 150
Protein sequence:
>150_residues MRLVIQRVSKAAVHIGGVCAGAVGPGLLILAGIEEADTEEDVRWLANKAAAMRIFSDADGKMNLSVREVSGSVLVVSQFT LHASTRKGNRPSFIRAARPERAIPLYELFKKELASLLEGRVESGEFGADMQVSLINDGPVTIFMDSRKRE
Sequences:
>Translated_150_residues MRLVIQRVSKAAVHIGGVCAGAVGPGLLILAGIEEADTEEDVRWLANKAAAMRIFSDADGKMNLSVREVSGSVLVVSQFT LHASTRKGNRPSFIRAARPERAIPLYELFKKELASLLEGRVESGEFGADMQVSLINDGPVTIFMDSRKRE >Mature_150_residues MRLVIQRVSKAAVHIGGVCAGAVGPGLLILAGIEEADTEEDVRWLANKAAAMRIFSDADGKMNLSVREVSGSVLVVSQFT LHASTRKGNRPSFIRAARPERAIPLYELFKKELASLLEGRVESGEFGADMQVSLINDGPVTIFMDSRKRE
Specific function: Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine
COG id: COG1490
COG function: function code J; D-Tyr-tRNAtyr deacylase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DTD family
Homologues:
Organism=Homo sapiens, GI30795227, Length=148, Percent_Identity=39.1891891891892, Blast_Score=100, Evalue=7e-22, Organism=Escherichia coli, GI1790320, Length=144, Percent_Identity=50.6944444444444, Blast_Score=143, Evalue=4e-36, Organism=Caenorhabditis elegans, GI115533292, Length=151, Percent_Identity=37.0860927152318, Blast_Score=106, Evalue=6e-24, Organism=Saccharomyces cerevisiae, GI6319982, Length=148, Percent_Identity=41.2162162162162, Blast_Score=109, Evalue=2e-25, Organism=Drosophila melanogaster, GI281361569, Length=147, Percent_Identity=41.4965986394558, Blast_Score=113, Evalue=5e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): DTD_AKKM8 (B2UQS5)
Other databases:
- EMBL: CP001071 - RefSeq: YP_001877591.1 - ProteinModelPortal: B2UQS5 - SMR: B2UQS5 - GeneID: 6274163 - GenomeReviews: CP001071_GR - KEGG: amu:Amuc_0978 - HOGENOM: HBG286048 - OMA: MKAVIQR - GO: GO:0005737 - HAMAP: MF_00518 - InterPro: IPR003732 - Gene3D: G3DSA:3.50.80.10 - PANTHER: PTHR10472 - TIGRFAMs: TIGR00256
Pfam domain/function: PF02580 Tyr_Deacylase; SSF69500 DTyrtRNA_deacyls
EC number: NA
Molecular weight: Translated: 16283; Mature: 16283
Theoretical pI: Translated: 8.51; Mature: 8.51
Prosite motif: NA
Important sites: ACT_SITE 80-80
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLVIQRVSKAAVHIGGVCAGAVGPGLLILAGIEEADTEEDVRWLANKAAAMRIFSDADG CHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHEEEEECCCC KMNLSVREVSGSVLVVSQFTLHASTRKGNRPSFIRAARPERAIPLYELFKKELASLLEGR EEEEEEEECCCCEEEEEEEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCC VESGEFGADMQVSLINDGPVTIFMDSRKRE CCCCCCCCCEEEEEECCCCEEEEECCCCCC >Mature Secondary Structure MRLVIQRVSKAAVHIGGVCAGAVGPGLLILAGIEEADTEEDVRWLANKAAAMRIFSDADG CHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHEEEEECCCC KMNLSVREVSGSVLVVSQFTLHASTRKGNRPSFIRAARPERAIPLYELFKKELASLLEGR EEEEEEEECCCCEEEEEEEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCC VESGEFGADMQVSLINDGPVTIFMDSRKRE CCCCCCCCCEEEEEECCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA