Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735467
Identifier: 187735467
GI number: 187735467
Start: 1153070
End: 1153816
Strand: Direct
Name: 187735467
Synonym: Amuc_0966
Alternate gene names: NA
Gene position: 1153070-1153816 (Clockwise)
Preceding gene: 187735466
Following gene: 187735469
Centisome position: 43.28
GC content: 60.11
Gene sequence:
>747_bases ATGCTACGGCTCATGAAGGCAGTATACCTGTGTTTGTGCATGCTGGCGGCGTTCTGTTTTCCGGCCGCGGCGCTCCCTGC GGATTGCAGCCAGGTGATTGTAGGTTCCGCGGACGGGTGGAATAGTTCCCATGTGCAGTTGAGCCTTTTGGAGAAGGGGC CGCGGGGCTGGGTGATGGTGAAGGGGCCGTTTCCGGCGCGTCTGGGAAAATCCGGTCTGGTCTGGGGCAGGGGCGTCAGC CTCCCTCCCGCCGGAGGGCCGGTGAAGAAGGAGGGGGACTTGCGCTCTCCCGCGGGAATTTTTGAACTGGGGGGCGTATA TGGAACTGTTCCCGCGCCGCAGAAAAAGCGTTCCATGCCGTACCGCCGCATTACGCCGCGGGACATGTGGGTGGATGACC CTGCTTCTCCCCTGTATAACCAGCACTTTGTGCTGAAGCATGATCCCGTCACGCCTTGGGAGTTCAAGCAGCAGATGAAG CTGAATGATTACGCCCACAGTCTGAAACTGTTTATCCGGCATAATGCCGCAGACGGACGGCAGAAACCCGTGCCGGGTGC GGGTTCCTCCATTTTTTTCCATATCTGGCGCCGGGACGGAGGAGCCCCTACGGCCGGATGCACCGCGATGAGCGAGGAAA ATTTGAGGGCCATGATTGCATGGCTGGATCCTTCCAGACACCCCCTTTATATTCTGCTCCCCGCCAGGGAATATTTGCGC CTGCGCAGAGCCTGGGGGCTGCCGTGA
Upstream 100 bases:
>100_bases TGCTGGAAGAAGTTCTTCCGTTGAACTAGGCGGGTGGATTCCGCCGGACGGCGCGCCTGCGGAGACGGAGTAATTGCTTT TCTTCCGGAACGGTGCCGTT
Downstream 100 bases:
>100_bases TATTTTCAGAATCCGCCTTTGCAGGCACGCCTGTTCCGCCGCCCCGGGACGGACAGGGGAGTGGTTTAAACCCTACGGAT GGAAGGGCTGTTGGATGGTG
Product: hypothetical protein
Products: NA
Alternate protein names: Secreted Protein; S-Layer Homology And Secreted GW Repeat Fusion Protein; S-Layer Domain Protein; SH3 Domain-Containing Protein; Lipoprotein
Number of amino acids: Translated: 248; Mature: 248
Protein sequence:
>248_residues MLRLMKAVYLCLCMLAAFCFPAAALPADCSQVIVGSADGWNSSHVQLSLLEKGPRGWVMVKGPFPARLGKSGLVWGRGVS LPPAGGPVKKEGDLRSPAGIFELGGVYGTVPAPQKKRSMPYRRITPRDMWVDDPASPLYNQHFVLKHDPVTPWEFKQQMK LNDYAHSLKLFIRHNAADGRQKPVPGAGSSIFFHIWRRDGGAPTAGCTAMSEENLRAMIAWLDPSRHPLYILLPAREYLR LRRAWGLP
Sequences:
>Translated_248_residues MLRLMKAVYLCLCMLAAFCFPAAALPADCSQVIVGSADGWNSSHVQLSLLEKGPRGWVMVKGPFPARLGKSGLVWGRGVS LPPAGGPVKKEGDLRSPAGIFELGGVYGTVPAPQKKRSMPYRRITPRDMWVDDPASPLYNQHFVLKHDPVTPWEFKQQMK LNDYAHSLKLFIRHNAADGRQKPVPGAGSSIFFHIWRRDGGAPTAGCTAMSEENLRAMIAWLDPSRHPLYILLPAREYLR LRRAWGLP >Mature_248_residues MLRLMKAVYLCLCMLAAFCFPAAALPADCSQVIVGSADGWNSSHVQLSLLEKGPRGWVMVKGPFPARLGKSGLVWGRGVS LPPAGGPVKKEGDLRSPAGIFELGGVYGTVPAPQKKRSMPYRRITPRDMWVDDPASPLYNQHFVLKHDPVTPWEFKQQMK LNDYAHSLKLFIRHNAADGRQKPVPGAGSSIFFHIWRRDGGAPTAGCTAMSEENLRAMIAWLDPSRHPLYILLPAREYLR LRRAWGLP
Specific function: Unknown
COG id: COG3786
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27510; Mature: 27510
Theoretical pI: Translated: 10.36; Mature: 10.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRLMKAVYLCLCMLAAFCFPAAALPADCSQVIVGSADGWNSSHVQLSLLEKGPRGWVMV CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCEEEE KGPFPARLGKSGLVWGRGVSLPPAGGPVKKEGDLRSPAGIFELGGVYGTVPAPQKKRSMP ECCCCHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEECCCCCHHHHCCC YRRITPRDMWVDDPASPLYNQHFVLKHDPVTPWEFKQQMKLNDYAHSLKLFIRHNAADGR CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCC QKPVPGAGSSIFFHIWRRDGGAPTAGCTAMSEENLRAMIAWLDPSRHPLYILLPAREYLR CCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCHHHHH LRRAWGLP HHHHCCCC >Mature Secondary Structure MLRLMKAVYLCLCMLAAFCFPAAALPADCSQVIVGSADGWNSSHVQLSLLEKGPRGWVMV CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCEEEE KGPFPARLGKSGLVWGRGVSLPPAGGPVKKEGDLRSPAGIFELGGVYGTVPAPQKKRSMP ECCCCHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEECCCCCHHHHCCC YRRITPRDMWVDDPASPLYNQHFVLKHDPVTPWEFKQQMKLNDYAHSLKLFIRHNAADGR CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCC QKPVPGAGSSIFFHIWRRDGGAPTAGCTAMSEENLRAMIAWLDPSRHPLYILLPAREYLR CCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCHHHHH LRRAWGLP HHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA