Click here to switch to the map view.

The map label for this gene is rlpA [C]

Identifier: 187735424

GI number: 187735424

Start: 1105158

End: 1105679

Strand: Reverse

Name: rlpA [C]

Synonym: Amuc_0923

Alternate gene names: 187735424

Gene position: 1105679-1105158 (Counterclockwise)

Preceding gene: 187735440

Following gene: 187735423

Centisome position: 41.5

GC content: 58.43

Gene sequence:

>522_bases
GTGTTAAACGTAAAAAGCGTGAAATGGTTCCTCCCCGTCCTGTTGCTTTTTCTGATGCCGGGCTGCTCCACTACGGAGAA
GTGCGCTCAGAAAACGGAGCCATCCGTTCAGGAGGCAGAGGCGCATGTCAAAAATGCGCCCTACCGGGTGCGTGGAAAAA
GGTATACTCCCATGAGCGTGGCGGATGCCCTGCAATACCATGAGACCGGCTATGCCTCCTGGTATGGCGGCAAAGCGCGC
CGCCTGAAGACATCTTCCGGAGAATACATCAATCCCCAGCGTTCCATGACGGCGGCCCACAAAACCCTGCCGATGCCGTG
CAAGGTGAAAGTCACCTGCCTGGAAACCGGCAAATCAACCGTCGTCAGGATCAACAACCGCGGGCCTTTTCACAGCAACC
GCCTGATAGACCTCACCACCGCCGCCGCAAGCCGCATCGGCCTGCATAGACGCGGCGTATCCAGGGTCCGTCTGGAAGTC
ATCTCCGTGGGTGACGGCCCGCATGAGGTTTCCGCCCGTTAA

Upstream 100 bases:

>100_bases
CTCAACTGGTAAACCGCAACCGGGAAAAGATTGTTCCGCCCTGCTCTATTCCTTAAATTTCAACTCTTGTTCCTTTTTTG
TTATACAAAACCATCAATAT

Downstream 100 bases:

>100_bases
TCCCATCTCATCCTTTTCCGTATATTTATCATTTTACCCTGCATGATTCCGCTCCGCATTGTTCTTGCCTCCCTGGCATG
CCTGTACCCGTTCTCTCTGG

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MLNVKSVKWFLPVLLLFLMPGCSTTEKCAQKTEPSVQEAEAHVKNAPYRVRGKRYTPMSVADALQYHETGYASWYGGKAR
RLKTSSGEYINPQRSMTAAHKTLPMPCKVKVTCLETGKSTVVRINNRGPFHSNRLIDLTTAAASRIGLHRRGVSRVRLEV
ISVGDGPHEVSAR

Sequences:

>Translated_173_residues
MLNVKSVKWFLPVLLLFLMPGCSTTEKCAQKTEPSVQEAEAHVKNAPYRVRGKRYTPMSVADALQYHETGYASWYGGKAR
RLKTSSGEYINPQRSMTAAHKTLPMPCKVKVTCLETGKSTVVRINNRGPFHSNRLIDLTTAAASRIGLHRRGVSRVRLEV
ISVGDGPHEVSAR
>Mature_173_residues
MLNVKSVKWFLPVLLLFLMPGCSTTEKCAQKTEPSVQEAEAHVKNAPYRVRGKRYTPMSVADALQYHETGYASWYGGKAR
RLKTSSGEYINPQRSMTAAHKTLPMPCKVKVTCLETGKSTVVRINNRGPFHSNRLIDLTTAAASRIGLHRRGVSRVRLEV
ISVGDGPHEVSAR

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=123, Percent_Identity=39.0243902439024, Blast_Score=80, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 19208; Mature: 19208

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNVKSVKWFLPVLLLFLMPGCSTTEKCAQKTEPSVQEAEAHVKNAPYRVRGKRYTPMSV
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHCCCCEEECCCCCCCHHH
ADALQYHETGYASWYGGKARRLKTSSGEYINPQRSMTAAHKTLPMPCKVKVTCLETGKST
HHHHHHHCCCCCEECCCCCEEEECCCCCEECCHHHHHHHHHCCCCCCEEEEEEEECCCCE
VVRINNRGPFHSNRLIDLTTAAASRIGLHRRGVSRVRLEVISVGDGPHEVSAR
EEEECCCCCCCCCCEEEEHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MLNVKSVKWFLPVLLLFLMPGCSTTEKCAQKTEPSVQEAEAHVKNAPYRVRGKRYTPMSV
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHCCCCEEECCCCCCCHHH
ADALQYHETGYASWYGGKARRLKTSSGEYINPQRSMTAAHKTLPMPCKVKVTCLETGKST
HHHHHHHCCCCCEECCCCCEEEECCCCCEECCHHHHHHHHHCCCCCCEEEEEEEECCCCE
VVRINNRGPFHSNRLIDLTTAAASRIGLHRRGVSRVRLEVISVGDGPHEVSAR
EEEECCCCCCCCCCEEEEHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]