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The map label for this gene is ydcP [H]

Identifier: 187735418

GI number: 187735418

Start: 1094295

End: 1096802

Strand: Reverse

Name: ydcP [H]

Synonym: Amuc_0917

Alternate gene names: 187735418

Gene position: 1096802-1094295 (Counterclockwise)

Preceding gene: 187735419

Following gene: 187735416

Centisome position: 41.17

GC content: 60.85

Gene sequence:

>2508_bases
GTGATTTCCGACGACATAACCCTTTCCGCCCTCCGGCCCGGAGACCTGCGCCCCGAACTGCTGGCCCCCGCCGGGGACAT
GGACTGCGCCCGCGCCGCCGTAGCCAATGGCGCAGACGCCATTTATTTCGGCCTGGACCGTTTCAACGCCCGTCTGCGCG
CAGACAACTTCACGCTGGATTCCCTTCCGGAACTGATGCGTTTCCTTCACGCACACGGCGTGAAGGGGTACGTGACCATG
AATACGCTCATTTTTACCTCCGAACTGGCGGACGCCCTCTCCTACCTGGGCCACCTGAATGCCGCCGGCGCGGACGGGGT
CATCGTGCAGGACATCGGTCTTGCCCACTGCCTGACGGAATGGGGAAGGCAGGTTCCCGGCATGAAGCTGGAACTGCACG
CCTCCACCCAGATGACACTTTCCTCCCCGGACGGGTTGGAATTCGCCTCCGGATTCCTGGACCTGAAGCAGGCCGTCCTG
GCCCGGGAACTGAGCCTGAAGGAAATCGGGCAATGTGTACGGCATACGGACATTCCCCTGGAAGTATTTGTACACGGAGC
GCTCTGCGTGGCCTATTCCGGCCAGTGCCTTACATCGGAAAGCCTGGGACAGCGCAGCGCCAACAGGGGAGAATGCGCGC
AGGCCTGCCGCCTGCCCTACTCCCTGGTTGTAGACGGCAAAACCGTTCCTCTGGGAGAACGGCGCTACCTGCTCAGCCCG
CAGGACCTGTGCGCCCTTGACCGCATCCCGGACCTGGTCCGCATGGGCGTGAAAAGCTACAAGATAGAGGGACGTCTGAA
AAGCCCGGAATACGTTGCGGCGGTAACGGCGGCCTATAGAAAAGCTCTGGACGCCGCCTGCGCTGGAATACTTGTGGATG
AAATGGTGACCGCACGCGACCGTTATGCACTGCAAATGGTATTTTCACGCGGCTTCTCCACCGGCTGGCTGGACGGGACG
GACCACCCGCGTCTGACCCACGGCCGCTACGGTAAAAAGAGGGGCGCCTACGCAGGCGTCATTATGAACAGCGGTCAGGG
CTGGCTGGATATCAGGCCGGAAGGGGGCATTCCGCTCGCGCCCGGGGACGGCTTCGTCATTGATGCAGGGGAAGACCGCA
ATGAAGAACAGGGCGGACGTATCTGGAAAGTGCAGAGAAACCGCCTTTTCTTCCACGGAAAGGCATCCCGTATTGACTGG
AGCAGGGTTAAACCCGGGCAAAAACTCTGGAAAACGGATGATCCGGCCCTGAACGCGGAGTTGAAAAAAATGCGGGAACA
CTTGCAGGAATCCACCATTCCCCTCCATCTGACATGTGCCGGGTCCGTCGGGAACCCCCTGACGATTGCCTGTCCGGAAT
ACGGATGTTCCGTGCAATCTCCCCAGCCCCTTCAGACGGCAGAAAAACGCCCTCTGACTCCCGAAGTGCTGAAACAACAG
CTCGGCAGGCTGGGGGGAACGGGATTCCGCCTGGCCTCCTGCGACTGCCCTCTGCCGGAGGGCCTGATGCTTCCGCTCAG
CATCCTCAACCAGACAAGGCGTGCCCTGGTGGAACGAATTCAAACGGCCCGGGAGGCAAAAGAATCCTCCGTTCCCTCTC
ATCCTCCGGCCTCCTTCACCCTTCCTCCGCTGCCGAAGGGAACAGCCGTTCCGGACATGCCTCCCCATTTGTCTGTTCTG
TGCCGCAAAACGGAGCAAATACCCGCCGCGCTGGATGCCGGAGCGAATGCCGTTTATCTGGACTTTGAAGACCTCCGGGA
CTATGCGGAAGGCATAAAAACCGTCCGGGAACACGGAAAAAGCATTCCCGTCTTCCTGGCGACGCCCCGCATCCAGAAAC
CCTCGGAAGTCGGATACTTCAAACTTATGGAACGGGCGGAACCTGACGGCATCCTTATTCGCAACCTGGGTGCGGCGCAA
TATTTCCGCCAGTCCCTCCTGCATCGCATCGGAGATTTTTCCCTGAACGTCGCCAATCCATACAGCGCGGCTATCCTGAA
GAAACAGGGGAATCTGGCCCATCTCACCATCTCTTACGACCTGAACGCGGAACAGGTGGCGGACCTGCTCCGCGCCGCGC
CGCCGGAATGGTTTGAACTGACGCTGCACCAGCACATGCCCATGTTTCATATGGAGCATTGCGTGTTCTGCACCTTCCTG
TCGAACGGCACCAGTTATAAGAACTGCGGCCGCCCCTGCGAACGGCATCATGTGCAGCTGCGTGACCGCGTAGGACAGCT
TCATCCCCTGCTGGCGGACGCCGGGTGCCGGAACACGCTGTTCAACGGACGCGCCCAGACGGGAGCCGGCTTCCTCCAGG
ACTTCCGCCGTCTGGGCCTTTCCCGTTTCCGGCTGGAACTGCTGGATGATCCCCCGGAAAAAGTGCGCCTTCTGGTGTCC
CGCTACCGGGAGCTGCTGGACGGTTCCTGCACTGCGGCCCGGCTTATCCGGGAATTGGACGTCGCAGAACAGCTCGGCAC
TACGGAGGGGACGCTCCGGCCGGGATAA

Upstream 100 bases:

>100_bases
AGGTTCCCTGTTCCTTCTGGGAGATTTGAAAGCTCTGCTCCGCCATGCGGAAAAACGCAGCACCGCCCAATAACCCCTAC
CGTCCTTTTTGCTTTTCCCC

Downstream 100 bases:

>100_bases
TCTCCACCTGAACAACGGTTAATCTCCGTTCAGATTCCGGGGCTTTGATCATACATTCTCAATATCTTATCACTCTTTAA
AAGGATACCCATTTCTCTCT

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 835; Mature: 835

Protein sequence:

>835_residues
MISDDITLSALRPGDLRPELLAPAGDMDCARAAVANGADAIYFGLDRFNARLRADNFTLDSLPELMRFLHAHGVKGYVTM
NTLIFTSELADALSYLGHLNAAGADGVIVQDIGLAHCLTEWGRQVPGMKLELHASTQMTLSSPDGLEFASGFLDLKQAVL
ARELSLKEIGQCVRHTDIPLEVFVHGALCVAYSGQCLTSESLGQRSANRGECAQACRLPYSLVVDGKTVPLGERRYLLSP
QDLCALDRIPDLVRMGVKSYKIEGRLKSPEYVAAVTAAYRKALDAACAGILVDEMVTARDRYALQMVFSRGFSTGWLDGT
DHPRLTHGRYGKKRGAYAGVIMNSGQGWLDIRPEGGIPLAPGDGFVIDAGEDRNEEQGGRIWKVQRNRLFFHGKASRIDW
SRVKPGQKLWKTDDPALNAELKKMREHLQESTIPLHLTCAGSVGNPLTIACPEYGCSVQSPQPLQTAEKRPLTPEVLKQQ
LGRLGGTGFRLASCDCPLPEGLMLPLSILNQTRRALVERIQTAREAKESSVPSHPPASFTLPPLPKGTAVPDMPPHLSVL
CRKTEQIPAALDAGANAVYLDFEDLRDYAEGIKTVREHGKSIPVFLATPRIQKPSEVGYFKLMERAEPDGILIRNLGAAQ
YFRQSLLHRIGDFSLNVANPYSAAILKKQGNLAHLTISYDLNAEQVADLLRAAPPEWFELTLHQHMPMFHMEHCVFCTFL
SNGTSYKNCGRPCERHHVQLRDRVGQLHPLLADAGCRNTLFNGRAQTGAGFLQDFRRLGLSRFRLELLDDPPEKVRLLVS
RYRELLDGSCTAARLIRELDVAEQLGTTEGTLRPG

Sequences:

>Translated_835_residues
MISDDITLSALRPGDLRPELLAPAGDMDCARAAVANGADAIYFGLDRFNARLRADNFTLDSLPELMRFLHAHGVKGYVTM
NTLIFTSELADALSYLGHLNAAGADGVIVQDIGLAHCLTEWGRQVPGMKLELHASTQMTLSSPDGLEFASGFLDLKQAVL
ARELSLKEIGQCVRHTDIPLEVFVHGALCVAYSGQCLTSESLGQRSANRGECAQACRLPYSLVVDGKTVPLGERRYLLSP
QDLCALDRIPDLVRMGVKSYKIEGRLKSPEYVAAVTAAYRKALDAACAGILVDEMVTARDRYALQMVFSRGFSTGWLDGT
DHPRLTHGRYGKKRGAYAGVIMNSGQGWLDIRPEGGIPLAPGDGFVIDAGEDRNEEQGGRIWKVQRNRLFFHGKASRIDW
SRVKPGQKLWKTDDPALNAELKKMREHLQESTIPLHLTCAGSVGNPLTIACPEYGCSVQSPQPLQTAEKRPLTPEVLKQQ
LGRLGGTGFRLASCDCPLPEGLMLPLSILNQTRRALVERIQTAREAKESSVPSHPPASFTLPPLPKGTAVPDMPPHLSVL
CRKTEQIPAALDAGANAVYLDFEDLRDYAEGIKTVREHGKSIPVFLATPRIQKPSEVGYFKLMERAEPDGILIRNLGAAQ
YFRQSLLHRIGDFSLNVANPYSAAILKKQGNLAHLTISYDLNAEQVADLLRAAPPEWFELTLHQHMPMFHMEHCVFCTFL
SNGTSYKNCGRPCERHHVQLRDRVGQLHPLLADAGCRNTLFNGRAQTGAGFLQDFRRLGLSRFRLELLDDPPEKVRLLVS
RYRELLDGSCTAARLIRELDVAEQLGTTEGTLRPG
>Mature_835_residues
MISDDITLSALRPGDLRPELLAPAGDMDCARAAVANGADAIYFGLDRFNARLRADNFTLDSLPELMRFLHAHGVKGYVTM
NTLIFTSELADALSYLGHLNAAGADGVIVQDIGLAHCLTEWGRQVPGMKLELHASTQMTLSSPDGLEFASGFLDLKQAVL
ARELSLKEIGQCVRHTDIPLEVFVHGALCVAYSGQCLTSESLGQRSANRGECAQACRLPYSLVVDGKTVPLGERRYLLSP
QDLCALDRIPDLVRMGVKSYKIEGRLKSPEYVAAVTAAYRKALDAACAGILVDEMVTARDRYALQMVFSRGFSTGWLDGT
DHPRLTHGRYGKKRGAYAGVIMNSGQGWLDIRPEGGIPLAPGDGFVIDAGEDRNEEQGGRIWKVQRNRLFFHGKASRIDW
SRVKPGQKLWKTDDPALNAELKKMREHLQESTIPLHLTCAGSVGNPLTIACPEYGCSVQSPQPLQTAEKRPLTPEVLKQQ
LGRLGGTGFRLASCDCPLPEGLMLPLSILNQTRRALVERIQTAREAKESSVPSHPPASFTLPPLPKGTAVPDMPPHLSVL
CRKTEQIPAALDAGANAVYLDFEDLRDYAEGIKTVREHGKSIPVFLATPRIQKPSEVGYFKLMERAEPDGILIRNLGAAQ
YFRQSLLHRIGDFSLNVANPYSAAILKKQGNLAHLTISYDLNAEQVADLLRAAPPEWFELTLHQHMPMFHMEHCVFCTFL
SNGTSYKNCGRPCERHHVQLRDRVGQLHPLLADAGCRNTLFNGRAQTGAGFLQDFRRLGLSRFRLELLDDPPEKVRLLVS
RYRELLDGSCTAARLIRELDVAEQLGTTEGTLRPG

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=557, Percent_Identity=32.3159784560144, Blast_Score=218, Evalue=1e-57,
Organism=Escherichia coli, GI1788397, Length=433, Percent_Identity=29.3302540415704, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI1789548, Length=297, Percent_Identity=32.996632996633, Blast_Score=137, Evalue=4e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 91929; Mature: 91929

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISDDITLSALRPGDLRPELLAPAGDMDCARAAVANGADAIYFGLDRFNARLRADNFTLD
CCCCCEEEEEECCCCCCHHHCCCCCCHHHHHHHHCCCCCEEEEEHHHHCCEEECCCCCHH
SLPELMRFLHAHGVKGYVTMNTLIFTSELADALSYLGHLNAAGADGVIVQDIGLAHCLTE
HHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHH
WGRQVPGMKLELHASTQMTLSSPDGLEFASGFLDLKQAVLARELSLKEIGQCVRHTDIPL
HHHCCCCCEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCH
EVFVHGALCVAYSGQCLTSESLGQRSANRGECAQACRLPYSLVVDGKTVPLGERRYLLSP
HHHHHHHEEEEECCCEECHHHHHCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCEEECCC
QDLCALDRIPDLVRMGVKSYKIEGRLKSPEYVAAVTAAYRKALDAACAGILVDEMVTARD
HHHHHHHHCHHHHHHCHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYALQMVFSRGFSTGWLDGTDHPRLTHGRYGKKRGAYAGVIMNSGQGWLDIRPEGGIPLA
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCEEEC
PGDGFVIDAGEDRNEEQGGRIWKVQRNRLFFHGKASRIDWSRVKPGQKLWKTDDPALNAE
CCCCEEEECCCCCCCCCCCCEEEEECCEEEEECCCCCCCHHHCCCCHHHCCCCCCCCCHH
LKKMREHLQESTIPLHLTCAGSVGNPLTIACPEYGCSVQSPQPLQTAEKRPLTPEVLKQQ
HHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCHHHHHHH
LGRLGGTGFRLASCDCPLPEGLMLPLSILNQTRRALVERIQTAREAKESSVPSHPPASFT
HHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
LPPLPKGTAVPDMPPHLSVLCRKTEQIPAALDAGANAVYLDFEDLRDYAEGIKTVREHGK
CCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCC
SIPVFLATPRIQKPSEVGYFKLMERAEPDGILIRNLGAAQYFRQSLLHRIGDFSLNVANP
CCCEEEECCCCCCCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCEEECCCC
YSAAILKKQGNLAHLTISYDLNAEQVADLLRAAPPEWFELTLHQHMPMFHMEHCVFCTFL
HHHHHEECCCCEEEEEEEECCCHHHHHHHHHCCCCHHEEHHHHHCCCHHHHHHHHEEEEC
SNGTSYKNCGRPCERHHVQLRDRVGQLHPLLADAGCRNTLFNGRAQTGAGFLQDFRRLGL
CCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHCH
SRFRLELLDDPPEKVRLLVSRYRELLDGSCTAARLIRELDVAEQLGTTEGTLRPG
HHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MISDDITLSALRPGDLRPELLAPAGDMDCARAAVANGADAIYFGLDRFNARLRADNFTLD
CCCCCEEEEEECCCCCCHHHCCCCCCHHHHHHHHCCCCCEEEEEHHHHCCEEECCCCCHH
SLPELMRFLHAHGVKGYVTMNTLIFTSELADALSYLGHLNAAGADGVIVQDIGLAHCLTE
HHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHH
WGRQVPGMKLELHASTQMTLSSPDGLEFASGFLDLKQAVLARELSLKEIGQCVRHTDIPL
HHHCCCCCEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCH
EVFVHGALCVAYSGQCLTSESLGQRSANRGECAQACRLPYSLVVDGKTVPLGERRYLLSP
HHHHHHHEEEEECCCEECHHHHHCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCEEECCC
QDLCALDRIPDLVRMGVKSYKIEGRLKSPEYVAAVTAAYRKALDAACAGILVDEMVTARD
HHHHHHHHCHHHHHHCHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYALQMVFSRGFSTGWLDGTDHPRLTHGRYGKKRGAYAGVIMNSGQGWLDIRPEGGIPLA
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCEEEC
PGDGFVIDAGEDRNEEQGGRIWKVQRNRLFFHGKASRIDWSRVKPGQKLWKTDDPALNAE
CCCCEEEECCCCCCCCCCCCEEEEECCEEEEECCCCCCCHHHCCCCHHHCCCCCCCCCHH
LKKMREHLQESTIPLHLTCAGSVGNPLTIACPEYGCSVQSPQPLQTAEKRPLTPEVLKQQ
HHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCHHHHHHH
LGRLGGTGFRLASCDCPLPEGLMLPLSILNQTRRALVERIQTAREAKESSVPSHPPASFT
HHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
LPPLPKGTAVPDMPPHLSVLCRKTEQIPAALDAGANAVYLDFEDLRDYAEGIKTVREHGK
CCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCC
SIPVFLATPRIQKPSEVGYFKLMERAEPDGILIRNLGAAQYFRQSLLHRIGDFSLNVANP
CCCEEEECCCCCCCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCEEECCCC
YSAAILKKQGNLAHLTISYDLNAEQVADLLRAAPPEWFELTLHQHMPMFHMEHCVFCTFL
HHHHHEECCCCEEEEEEEECCCHHHHHHHHHCCCCHHEEHHHHHCCCHHHHHHHHEEEEC
SNGTSYKNCGRPCERHHVQLRDRVGQLHPLLADAGCRNTLFNGRAQTGAGFLQDFRRLGL
CCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHCH
SRFRLELLDDPPEKVRLLVSRYRELLDGSCTAARLIRELDVAEQLGTTEGTLRPG
HHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]