Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735362
Identifier: 187735362
GI number: 187735362
Start: 1026282
End: 1027034
Strand: Reverse
Name: 187735362
Synonym: Amuc_0860
Alternate gene names: NA
Gene position: 1027034-1026282 (Counterclockwise)
Preceding gene: 187735363
Following gene: 187735361
Centisome position: 38.55
GC content: 53.12
Gene sequence:
>753_bases ATGGGAACGGGTCGGGGCATAGCAGACATCACGCCGCTCACCTTGCTGGATTTTCCAAATAAGGTGGCCTGCATCTTCTG GCTGAGAGGCTGTAATTTGTTTTGTCAGTACTGTTACAACGTCTCCCTGGTCAGGGGAACGGATTCTCCTGCCGGAGACC GGACGGACTATCTTGATTTTCTCAGAGATCGGGTGGGATTTCTGGATGGGGTGGTTCTGTCCGGAGGCGAGTGCACGCTG TGTCCCGACCTTATCCCTATCTGCCGCAATATACGGCAGCTTGGCTTCGCAGTCAAAATAGACACCAACGGCACCCGGCC CGGCGTGGTGAAAACGCTGGTGGAGGAAGGGCTTTGCGATTATATTGCCCTGGATTACAAAGCGCCGGAAAAACTGTTCG GCTCCATTACCGGGCGTCCGGACTTATTCCCCTGCTTCACTCAAACGCTGGATTATCTGATCAACAGAAATTTCCCGTTT GAGGTTCGAACGACAATCCACTCCGGCCTTCTCGGGGAAAAGGAAATCAACCAGATCAGCGGGGATTTGACGTCGCGCGG CTATAGAGGAACCTACTACCTTCAGAATTTTTTTAATACAGAGGAAACACTCGGCCAAATCGGCGCTCCCGAACGGATGA TTGACTTATCTCTGCTAAACACGCATATCCCCATAGGGTTGCGCAATTTTCCCATCACGGAGAAAGCTCCCGGCTCCAGC TCCGGGAAACGGCAGCCGTCCCCTCTGACATAA
Upstream 100 bases:
>100_bases TCCATGACCGCGTCCACTTCGTGGAACCGGGCCGCCCCTGCTCCTGCTCCGCCCAAACGGAACAGCCGCGATAATTCTCC CAACAACATATGCGAAGTCG
Downstream 100 bases:
>100_bases TTTTTTTAAATAAAAGTTTCTATTTGTAAAATCGGGAAGTACCCTTCCGCCCGCCAACCATATTACCAGCTATTATTCAT GAGTGAAACCCAAAACAAGC
Product: anaerobic ribonucleoside-triphosphate reductase activating protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 250; Mature: 249
Protein sequence:
>250_residues MGTGRGIADITPLTLLDFPNKVACIFWLRGCNLFCQYCYNVSLVRGTDSPAGDRTDYLDFLRDRVGFLDGVVLSGGECTL CPDLIPICRNIRQLGFAVKIDTNGTRPGVVKTLVEEGLCDYIALDYKAPEKLFGSITGRPDLFPCFTQTLDYLINRNFPF EVRTTIHSGLLGEKEINQISGDLTSRGYRGTYYLQNFFNTEETLGQIGAPERMIDLSLLNTHIPIGLRNFPITEKAPGSS SGKRQPSPLT
Sequences:
>Translated_250_residues MGTGRGIADITPLTLLDFPNKVACIFWLRGCNLFCQYCYNVSLVRGTDSPAGDRTDYLDFLRDRVGFLDGVVLSGGECTL CPDLIPICRNIRQLGFAVKIDTNGTRPGVVKTLVEEGLCDYIALDYKAPEKLFGSITGRPDLFPCFTQTLDYLINRNFPF EVRTTIHSGLLGEKEINQISGDLTSRGYRGTYYLQNFFNTEETLGQIGAPERMIDLSLLNTHIPIGLRNFPITEKAPGSS SGKRQPSPLT >Mature_249_residues GTGRGIADITPLTLLDFPNKVACIFWLRGCNLFCQYCYNVSLVRGTDSPAGDRTDYLDFLRDRVGFLDGVVLSGGECTLC PDLIPICRNIRQLGFAVKIDTNGTRPGVVKTLVEEGLCDYIALDYKAPEKLFGSITGRPDLFPCFTQTLDYLINRNFPFE VRTTIHSGLLGEKEINQISGDLTSRGYRGTYYLQNFFNTEETLGQIGAPERMIDLSLLNTHIPIGLRNFPITEKAPGSSS GKRQPSPLT
Specific function: Unknown
COG id: COG1180
COG function: function code O; Pyruvate-formate lyase-activating enzyme
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the organic radical-activating enzymes family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006638 - InterPro: IPR012840 - InterPro: IPR001989 - InterPro: IPR007197 [H]
Pfam domain/function: PF04055 Radical_SAM [H]
EC number: NA
Molecular weight: Translated: 27703; Mature: 27572
Theoretical pI: Translated: 5.84; Mature: 5.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTGRGIADITPLTLLDFPNKVACIFWLRGCNLFCQYCYNVSLVRGTDSPAGDRTDYLDF CCCCCCCCCCCCCCEECCCCCEEEHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHH LRDRVGFLDGVVLSGGECTLCPDLIPICRNIRQLGFAVKIDTNGTRPGVVKTLVEEGLCD HHHHHHHHCCEEECCCCEEECHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHCCHH YIALDYKAPEKLFGSITGRPDLFPCFTQTLDYLINRNFPFEVRTTIHSGLLGEKEINQIS EEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHCCCCHHHHHHHH GDLTSRGYRGTYYLQNFFNTEETLGQIGAPERMIDLSLLNTHIPIGLRNFPITEKAPGSS CHHHCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC SGKRQPSPLT CCCCCCCCCC >Mature Secondary Structure GTGRGIADITPLTLLDFPNKVACIFWLRGCNLFCQYCYNVSLVRGTDSPAGDRTDYLDF CCCCCCCCCCCCCEECCCCCEEEHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHH LRDRVGFLDGVVLSGGECTLCPDLIPICRNIRQLGFAVKIDTNGTRPGVVKTLVEEGLCD HHHHHHHHCCEEECCCCEEECHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHCCHH YIALDYKAPEKLFGSITGRPDLFPCFTQTLDYLINRNFPFEVRTTIHSGLLGEKEINQIS EEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHCCCCHHHHHHHH GDLTSRGYRGTYYLQNFFNTEETLGQIGAPERMIDLSLLNTHIPIGLRNFPITEKAPGSS CHHHCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC SGKRQPSPLT CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]