Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is sdcS [H]
Identifier: 187735361
GI number: 187735361
Start: 1024464
End: 1026203
Strand: Reverse
Name: sdcS [H]
Synonym: Amuc_0859
Alternate gene names: 187735361
Gene position: 1026203-1024464 (Counterclockwise)
Preceding gene: 187735362
Following gene: 187735360
Centisome position: 38.52
GC content: 56.38
Gene sequence:
>1740_bases ATGAGTGAAACCCAAAACAAGCTGCTCAAGGCAGCTATCAGCCTGGCCGCCGCAGGAGTCGTCTTCTTCCTGCCTTTCGC TTCATGGGGAATCCAATTAAGCCCTATTGAAATCCGCGTCATCGCCATGTTTGTCATGGCGGCGCTCTTCTGGATTTTGG AACCCATCCCTATCTGGACCACCTCCGTGATGGTCATTACCCTGTCCCTGCTGTGCGTCTCCAACGGCTCTCTCTCATTC TTGATGCCGGAGCGCTATGACAAGGCGGCGGTATCCTCCATTCTGGATGACGCCATAGGCAAAGGGATCAATCCGGAGAT AGTCGGCAAATTGAAGGAAAATGTCGAAAACCGGTTAAATAAGAAAACCAAGCTGGACGCGGAAGAAGTGAGGATGACCC TGGGGTTCCAGCTCATGGACGCTTATGAAAAAATAGACTTGAACGCACAGGAACTGTCCCGTGAAGGAAAAACGGAAGAA GCCGCCGGGCAGGAATCCATAGCCGCCCAGCTCAAGACCGCGGCCGGGCGCCTGTACAGCAAGGAAATAACCGCGCGCAT CCAGGGGCTGCAATTTGTCAACACCATGCAGCAAAAATCCACGATGGCCACCTTCGCGGATCCCATCATCATGCTTTTCC TGGGCGGCTTTTTCCTAGCTGCGGCCGCAACCAAATACAGGCTGGACATGAACCTGGCCAAAGTACTTTTAAAACCCTTC GGCACCAATCCCAAATTCGTACTTCTGGGGCTGATGTCCGTAACGGCTCTTTTCTCCATGTTTATGAGCAATACGGCTAC GGCCGCCATGATGCTCGCCATCCTGACGCCGGTGCTGGCCCTGTTCACTCCGGAAGACAAAGGCCGCGCCGCCTTTGCCC TGGCCATCCCCATCGCCGCCAACCTCGGCGGCATTGGAACGCCTATCGGCACGCCCCCCAACGCAATCGCGCTGAAGGCG CTGCAGGGTATGGGGCTGGACGTCTCCTTCGGCAAATGGCTCATGTTCGGCATTCCTTTCGTCATCGTCATGATTCTGAT TGCGTGGCTTCTCCTGCTGTGGCTGTTCCCCATCTCTCAAAAGAAACTGGAACTTCAGGTGGGAGGGAAATTCCTGAGAA CCCCCAAGGCCATTATCGTTTACGTCACCTTTGCCGTTACCGTCCTGCTGTGGGTAACGGGCAAGGGAGTACACGGGCTG GACTCCAATACCATCGCCATGATTCCCATCGCCGTCTTTGCCATTACGGAAACCATCACCAAGGAAGACTTGAAGAAAAT GGGCTGGGACGTGCTCTGGCTGGTAGCCGGCGGCTTTGCCCTGGGGCTGGCCCTGCAAGACACCGGACTGGCAAAAAACC TGATCGGCTCCATTCCCTTTGCCCAATGGTCCCCCTTCCCGCTCATGGTGGGTACGGGAATCATCTGCCTGTTCATGGCC ACCTTCATGAGCCATACGGCTACGGCCTCCCTGCTCATCCCGATTATCGCCGTTGTCGGCGTCAACATGGGTGACAACCT GGCCCCCCTGGGCGGCGTTACCGCCCTGCTGGTGTCCGTGGCCTTCGCCTCCTCCCTGGGCATGAGCCTTCCCATCAGCA CCCCCCCCAACGCCCTGGCCTATGCCACCGGCCTGGTCAGCTCCAAGGGAATGGCCATTTCCGGCGTCATCCTGGGCATC CTGGGCATGATTTTAACCTACGTCATGATGATGATTCTTGCCCAATGCCATGCTTTTTAA
Upstream 100 bases:
>100_bases GCAGCCGTCCCCTCTGACATAATTTTTTTAAATAAAAGTTTCTATTTGTAAAATCGGGAAGTACCCTTCCGCCCGCCAAC CATATTACCAGCTATTATTC
Downstream 100 bases:
>100_bases GTAAGGTAATGTTCCATGCCGGGACATGTTGCCCCGGCATGGCCAACATCAACGGGAAAAGCGCCCTATGATCATTGAAC AGGAAGAATTCCAGAAAAAA
Product: anion transporter
Products: NA
Alternate protein names: Na(+)/dicarboxylate symporter [H]
Number of amino acids: Translated: 579; Mature: 578
Protein sequence:
>579_residues MSETQNKLLKAAISLAAAGVVFFLPFASWGIQLSPIEIRVIAMFVMAALFWILEPIPIWTTSVMVITLSLLCVSNGSLSF LMPERYDKAAVSSILDDAIGKGINPEIVGKLKENVENRLNKKTKLDAEEVRMTLGFQLMDAYEKIDLNAQELSREGKTEE AAGQESIAAQLKTAAGRLYSKEITARIQGLQFVNTMQQKSTMATFADPIIMLFLGGFFLAAAATKYRLDMNLAKVLLKPF GTNPKFVLLGLMSVTALFSMFMSNTATAAMMLAILTPVLALFTPEDKGRAAFALAIPIAANLGGIGTPIGTPPNAIALKA LQGMGLDVSFGKWLMFGIPFVIVMILIAWLLLLWLFPISQKKLELQVGGKFLRTPKAIIVYVTFAVTVLLWVTGKGVHGL DSNTIAMIPIAVFAITETITKEDLKKMGWDVLWLVAGGFALGLALQDTGLAKNLIGSIPFAQWSPFPLMVGTGIICLFMA TFMSHTATASLLIPIIAVVGVNMGDNLAPLGGVTALLVSVAFASSLGMSLPISTPPNALAYATGLVSSKGMAISGVILGI LGMILTYVMMMILAQCHAF
Sequences:
>Translated_579_residues MSETQNKLLKAAISLAAAGVVFFLPFASWGIQLSPIEIRVIAMFVMAALFWILEPIPIWTTSVMVITLSLLCVSNGSLSF LMPERYDKAAVSSILDDAIGKGINPEIVGKLKENVENRLNKKTKLDAEEVRMTLGFQLMDAYEKIDLNAQELSREGKTEE AAGQESIAAQLKTAAGRLYSKEITARIQGLQFVNTMQQKSTMATFADPIIMLFLGGFFLAAAATKYRLDMNLAKVLLKPF GTNPKFVLLGLMSVTALFSMFMSNTATAAMMLAILTPVLALFTPEDKGRAAFALAIPIAANLGGIGTPIGTPPNAIALKA LQGMGLDVSFGKWLMFGIPFVIVMILIAWLLLLWLFPISQKKLELQVGGKFLRTPKAIIVYVTFAVTVLLWVTGKGVHGL DSNTIAMIPIAVFAITETITKEDLKKMGWDVLWLVAGGFALGLALQDTGLAKNLIGSIPFAQWSPFPLMVGTGIICLFMA TFMSHTATASLLIPIIAVVGVNMGDNLAPLGGVTALLVSVAFASSLGMSLPISTPPNALAYATGLVSSKGMAISGVILGI LGMILTYVMMMILAQCHAF >Mature_578_residues SETQNKLLKAAISLAAAGVVFFLPFASWGIQLSPIEIRVIAMFVMAALFWILEPIPIWTTSVMVITLSLLCVSNGSLSFL MPERYDKAAVSSILDDAIGKGINPEIVGKLKENVENRLNKKTKLDAEEVRMTLGFQLMDAYEKIDLNAQELSREGKTEEA AGQESIAAQLKTAAGRLYSKEITARIQGLQFVNTMQQKSTMATFADPIIMLFLGGFFLAAAATKYRLDMNLAKVLLKPFG TNPKFVLLGLMSVTALFSMFMSNTATAAMMLAILTPVLALFTPEDKGRAAFALAIPIAANLGGIGTPIGTPPNAIALKAL QGMGLDVSFGKWLMFGIPFVIVMILIAWLLLLWLFPISQKKLELQVGGKFLRTPKAIIVYVTFAVTVLLWVTGKGVHGLD SNTIAMIPIAVFAITETITKEDLKKMGWDVLWLVAGGFALGLALQDTGLAKNLIGSIPFAQWSPFPLMVGTGIICLFMAT FMSHTATASLLIPIIAVVGVNMGDNLAPLGGVTALLVSVAFASSLGMSLPISTPPNALAYATGLVSSKGMAISGVILGIL GMILTYVMMMILAQCHAF
Specific function: Mediates the transport of dicarboxylates across the cytoplasmic membrane via a Na(+)-electrochemical gradient [H]
COG id: COG0471
COG function: function code P; Di- and tricarboxylate transporters
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the SLC13A transporter (TC 2.A.47) family. NADC subfamily [H]
Homologues:
Organism=Homo sapiens, GI301069349, Length=321, Percent_Identity=25.8566978193146, Blast_Score=86, Evalue=7e-17, Organism=Homo sapiens, GI225637549, Length=475, Percent_Identity=26.5263157894737, Blast_Score=86, Evalue=9e-17, Organism=Homo sapiens, GI225637552, Length=475, Percent_Identity=26.5263157894737, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI4506979, Length=475, Percent_Identity=26.5263157894737, Blast_Score=85, Evalue=2e-16, Organism=Homo sapiens, GI301069353, Length=156, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=5e-11, Organism=Homo sapiens, GI58761541, Length=156, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=6e-11, Organism=Homo sapiens, GI31377715, Length=156, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=6e-11, Organism=Homo sapiens, GI301069346, Length=156, Percent_Identity=26.9230769230769, Blast_Score=66, Evalue=7e-11, Organism=Caenorhabditis elegans, GI71988385, Length=438, Percent_Identity=29.4520547945205, Blast_Score=138, Evalue=9e-33, Organism=Caenorhabditis elegans, GI32565804, Length=439, Percent_Identity=28.4738041002278, Blast_Score=137, Evalue=2e-32, Organism=Caenorhabditis elegans, GI71989118, Length=472, Percent_Identity=24.5762711864407, Blast_Score=107, Evalue=2e-23, Organism=Saccharomyces cerevisiae, GI6324340, Length=348, Percent_Identity=32.183908045977, Blast_Score=152, Evalue=1e-37, Organism=Saccharomyces cerevisiae, GI6322263, Length=348, Percent_Identity=32.7586206896552, Blast_Score=144, Evalue=3e-35, Organism=Saccharomyces cerevisiae, GI6319885, Length=344, Percent_Identity=32.8488372093023, Blast_Score=130, Evalue=7e-31, Organism=Drosophila melanogaster, GI281366409, Length=462, Percent_Identity=24.4588744588745, Blast_Score=89, Evalue=6e-18, Organism=Drosophila melanogaster, GI17737623, Length=462, Percent_Identity=24.4588744588745, Blast_Score=89, Evalue=6e-18, Organism=Drosophila melanogaster, GI24666468, Length=462, Percent_Identity=24.4588744588745, Blast_Score=89, Evalue=6e-18, Organism=Drosophila melanogaster, GI45551633, Length=462, Percent_Identity=24.2424242424242, Blast_Score=89, Evalue=9e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001898 [H]
Pfam domain/function: PF00939 Na_sulph_symp [H]
EC number: NA
Molecular weight: Translated: 61969; Mature: 61838
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 5.4 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSETQNKLLKAAISLAAAGVVFFLPFASWGIQLSPIEIRVIAMFVMAALFWILEPIPIWT CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHCCCCHHH TSVMVITLSLLCVSNGSLSFLMPERYDKAAVSSILDDAIGKGINPEIVGKLKENVENRLN HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC KKTKLDAEEVRMTLGFQLMDAYEKIDLNAQELSREGKTEEAAGQESIAAQLKTAAGRLYS HHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHH KEITARIQGLQFVNTMQQKSTMATFADPIIMLFLGGFFLAAAATKYRLDMNLAKVLLKPF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GTNPKFVLLGLMSVTALFSMFMSNTATAAMMLAILTPVLALFTPEDKGRAAFALAIPIAA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEHHH NLGGIGTPIGTPPNAIALKALQGMGLDVSFGKWLMFGIPFVIVMILIAWLLLLWLFPISQ CCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC KKLELQVGGKFLRTPKAIIVYVTFAVTVLLWVTGKGVHGLDSNTIAMIPIAVFAITETIT CEEEHEECCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH KEDLKKMGWDVLWLVAGGFALGLALQDTGLAKNLIGSIPFAQWSPFPLMVGTGIICLFMA HHHHHHCCCHHHHHHHHHHHHHHEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH TFMSHTATASLLIPIIAVVGVNMGDNLAPLGGVTALLVSVAFASSLGMSLPISTPPNALA HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH YATGLVSSKGMAISGVILGILGMILTYVMMMILAQCHAF HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SETQNKLLKAAISLAAAGVVFFLPFASWGIQLSPIEIRVIAMFVMAALFWILEPIPIWT CHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHCCCCHHH TSVMVITLSLLCVSNGSLSFLMPERYDKAAVSSILDDAIGKGINPEIVGKLKENVENRLN HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC KKTKLDAEEVRMTLGFQLMDAYEKIDLNAQELSREGKTEEAAGQESIAAQLKTAAGRLYS HHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHH KEITARIQGLQFVNTMQQKSTMATFADPIIMLFLGGFFLAAAATKYRLDMNLAKVLLKPF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GTNPKFVLLGLMSVTALFSMFMSNTATAAMMLAILTPVLALFTPEDKGRAAFALAIPIAA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEHHH NLGGIGTPIGTPPNAIALKALQGMGLDVSFGKWLMFGIPFVIVMILIAWLLLLWLFPISQ CCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC KKLELQVGGKFLRTPKAIIVYVTFAVTVLLWVTGKGVHGLDSNTIAMIPIAVFAITETIT CEEEHEECCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH KEDLKKMGWDVLWLVAGGFALGLALQDTGLAKNLIGSIPFAQWSPFPLMVGTGIICLFMA HHHHHHCCCHHHHHHHHHHHHHHEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH TFMSHTATASLLIPIIAVVGVNMGDNLAPLGGVTALLVSVAFASSLGMSLPISTPPNALA HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH YATGLVSSKGMAISGVILGILGMILTYVMMMILAQCHAF HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA