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The map label for this gene is ycfH [C]

Identifier: 187735324

GI number: 187735324

Start: 967215

End: 968030

Strand: Reverse

Name: ycfH [C]

Synonym: Amuc_0822

Alternate gene names: 187735324

Gene position: 968030-967215 (Counterclockwise)

Preceding gene: 187735327

Following gene: 187735323

Centisome position: 36.34

GC content: 60.54

Gene sequence:

>816_bases
ATGATTATTGACACGCACTGCCATCTGGCTTCCGCTCAATTCGACCAGTCCCGCAGGGAAACTTACGTCCAGCATGCCCT
CCGGGAAGGCATTGACCGCATGATTACGCTGGGGGCGCGGATGGATGACTGGGAGGCAAACACGGCGTGGGCGCGCCAGT
TTCCCGGCGCGGTTTTTTGTGCGCTGGGCATCCATCCGGACGATGCCCATGACGCCCCGGCAGACTGGGCGGACCAGCTT
TTCCGGAAGGCGCAGGACGTTCCCCTGGCCGCCATCGGGGAAACGGGCCTGGATTACTTCCACGGGGCGCCCCAAGGCTG
GGAAACGGAACAATTCCACCGCCTTCAGCAGGACCTTCTGGAACGGCACTTTGACCTGGCGGAGCGCCTGGGCCTTAATA
TCGTCCTGCATACGCGGGACCGGAAAGGCTCCGCGAGCTTTGAGGACGCCTTGGCTATTGCCCGGAACTACGCGGGCCGC
GTGCGTCCCGTATTTCACTGCTTCATCGGAAATACCGCTCAGGCCATGCGGATCTTTGACGAACTGGACGGCATGGTCTC
CTTCACCGGGGTGGCTACTTTTAAAAACGCCCCCGTAGTGGCGGAAACCGCAAGCTGGTGCCCGGAAAACCGTATCATGC
TGGAAACGGACTCCCCCTATCTCAGCCCGGAACCCCTCCGGGGCCGCATGAACGAACCCGCCCATCTCATTCATACAGCC
CGTTTCATCGCCGCTGCCAGAGGCATGAACCTGGAAGATCTGGCCCATGTGACGACCCGAAATGCGGAAACCTTTTATAA
TCTGGGCAAGGTCTGA

Upstream 100 bases:

>100_bases
TCCGCGTGGCAAGGAAAAATCAGGCATGCTCTGCGTTTACACTTTTCAAAGCCGGCAAATATCCACAAACTTCATCCGTT
CCGCCACAGTCCCTTACACC

Downstream 100 bases:

>100_bases
AAAAAAATCCCGACAATCCGCGCTACCGCCTTGAATCCGAAATCATAAATTAGTATGAACAGGGCACACATGAAAACGCC
ATTCATTTTAACCTGCGCCT

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MIIDTHCHLASAQFDQSRRETYVQHALREGIDRMITLGARMDDWEANTAWARQFPGAVFCALGIHPDDAHDAPADWADQL
FRKAQDVPLAAIGETGLDYFHGAPQGWETEQFHRLQQDLLERHFDLAERLGLNIVLHTRDRKGSASFEDALAIARNYAGR
VRPVFHCFIGNTAQAMRIFDELDGMVSFTGVATFKNAPVVAETASWCPENRIMLETDSPYLSPEPLRGRMNEPAHLIHTA
RFIAAARGMNLEDLAHVTTRNAETFYNLGKV

Sequences:

>Translated_271_residues
MIIDTHCHLASAQFDQSRRETYVQHALREGIDRMITLGARMDDWEANTAWARQFPGAVFCALGIHPDDAHDAPADWADQL
FRKAQDVPLAAIGETGLDYFHGAPQGWETEQFHRLQQDLLERHFDLAERLGLNIVLHTRDRKGSASFEDALAIARNYAGR
VRPVFHCFIGNTAQAMRIFDELDGMVSFTGVATFKNAPVVAETASWCPENRIMLETDSPYLSPEPLRGRMNEPAHLIHTA
RFIAAARGMNLEDLAHVTTRNAETFYNLGKV
>Mature_271_residues
MIIDTHCHLASAQFDQSRRETYVQHALREGIDRMITLGARMDDWEANTAWARQFPGAVFCALGIHPDDAHDAPADWADQL
FRKAQDVPLAAIGETGLDYFHGAPQGWETEQFHRLQQDLLERHFDLAERLGLNIVLHTRDRKGSASFEDALAIARNYAGR
VRPVFHCFIGNTAQAMRIFDELDGMVSFTGVATFKNAPVVAETASWCPENRIMLETDSPYLSPEPLRGRMNEPAHLIHTA
RFIAAARGMNLEDLAHVTTRNAETFYNLGKV

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=275, Percent_Identity=26.5454545454545, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI226061614, Length=265, Percent_Identity=24.9056603773585, Blast_Score=72, Evalue=5e-13,
Organism=Escherichia coli, GI1787342, Length=280, Percent_Identity=31.0714285714286, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI87082439, Length=268, Percent_Identity=27.2388059701493, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI48994985, Length=274, Percent_Identity=26.2773722627737, Blast_Score=80, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71980746, Length=272, Percent_Identity=25.3676470588235, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17559024, Length=302, Percent_Identity=22.5165562913907, Blast_Score=80, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 30486; Mature: 30486

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIDTHCHLASAQFDQSRRETYVQHALREGIDRMITLGARMDDWEANTAWARQFPGAVFC
CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCEEEE
ALGIHPDDAHDAPADWADQLFRKAQDVPLAAIGETGLDYFHGAPQGWETEQFHRLQQDLL
EECCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCHHHHCCCCCCCCHHHHHHHHHHHH
ERHFDLAERLGLNIVLHTRDRKGSASFEDALAIARNYAGRVRPVFHCFIGNTAQAMRIFD
HHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHH
ELDGMVSFTGVATFKNAPVVAETASWCPENRIMLETDSPYLSPEPLRGRMNEPAHLIHTA
HHCCCEEHHHHHHCCCCCCEEHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHH
RFIAAARGMNLEDLAHVTTRNAETFYNLGKV
HHHHHHCCCCHHHHHHHHHCCHHHHHHCCCC
>Mature Secondary Structure
MIIDTHCHLASAQFDQSRRETYVQHALREGIDRMITLGARMDDWEANTAWARQFPGAVFC
CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCEEEE
ALGIHPDDAHDAPADWADQLFRKAQDVPLAAIGETGLDYFHGAPQGWETEQFHRLQQDLL
EECCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCHHHHCCCCCCCCHHHHHHHHHHHH
ERHFDLAERLGLNIVLHTRDRKGSASFEDALAIARNYAGRVRPVFHCFIGNTAQAMRIFD
HHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHH
ELDGMVSFTGVATFKNAPVVAETASWCPENRIMLETDSPYLSPEPLRGRMNEPAHLIHTA
HHCCCEEHHHHHHCCCCCCEEHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHH
RFIAAARGMNLEDLAHVTTRNAETFYNLGKV
HHHHHHCCCCHHHHHHHHHCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]