Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735313
Identifier: 187735313
GI number: 187735313
Start: 953940
End: 955103
Strand: Direct
Name: 187735313
Synonym: Amuc_0811
Alternate gene names: NA
Gene position: 953940-955103 (Clockwise)
Preceding gene: 187735309
Following gene: 187735314
Centisome position: 35.81
GC content: 51.37
Gene sequence:
>1164_bases ATGACAAATACGCCTTTCAACAAGGCGTACTTTATGATATCATGCGGCTACGGTTTTATGGGTTCCAGCACTTTACAACA ACAGGCCATTCATCTCGTCTTCGGTACGGATGAAGGAATGGTGCGTGAAAAGGCTTCCGGCATCTTTGCCGCTCTGACGG AAGGCACAAACGAATTTTCCCATGAAATTCTGGAAGCGGCCTGCGGTGATTCCGATGAAGCGGCCCAGCTGGTACGCCAG GTTATGGAAGCTCTGCGGACCCTCCCGTTTTTTCCGGGGCGCAAAGTAGTCTGGATGAAGAACTGCAATTTTCTGGGAGA CTCCGTCACGGGGCGTTCCTCCACCACGGAAGCGGCTCTGGATTCTTTCAGGCAATTGCTGGAAAGCGGCCTGGGGTCGG ACGTCCTGCTTCTTATTTCCGCCTCCGAATTTGACAAACGCCGTTCCTTTAACAAATTCCTGCTTCAATACGCCGCATCG GAAGAATTGAACAAGCCGGACATCACGAAAGCAGGCTGGGAAGGCAGTTTAATGCCCCTCATTAATAAGGAAACGGCGGC GCGGGGCATGAATTTCGACTCCGCCGCCCTGGAACTGTTCATTCACCGCGTCAGCGAATCCTCCCGCCAAATCATTTCCG AAATTGAAAAACTGGATCTTTATCTGGGAGCGGACAGACGCACCGTAATGCCGGAGGATGTCGAGCGCATGGTTCCGCTG ACGCGTACAGGCGTTATTTTTGAAATTTCCCGGGCTTTGGAAAACAAGAAAAGCGATGCGGCCATCTCTTTGATTGACTT TCAACTGGAACGCGGTGAAAACGCCATCACAATCATGCGTGCCGCATTCATCCCTACGTTAAGAAATTTGCTGGCTGCCA GACTTTTATGTGACGCATTCAACCTGAAGCCCACCAATTTCAAGGAATTTACGGCCCGCATTTCTTCCCTGCCCTCCTAT GCGGCCGCGTTAATTCCCTTGAAAAAAGACGGTACACCCAATGCGTATCCGCTTTTTCTGGCGGCGCAGAATGCTTCCAA ATTCAAGACGGAACGGCTGAAGCAAACTTTGAAAGAATGCATGAAGGCGGATAAAGCCCTGGTGTCCTCCTCTCTTGATC CCCGCCTGATTCTGCATCGTCTTGCTATCTGCTCCGCATCCTGA
Upstream 100 bases:
>100_bases ATGCCTGAAAACGGAGCCTGTCAAGCTTCAGCCGCTTTTTGACATTCCGGTTCCATTGATACTATTTAAGTACTTTCTCT TCAAATGAAAAAACTTTCAA
Downstream 100 bases:
>100_bases TGAACTCCTCCTCTTCTTCCGTTTTTCCCCTGTTTGACGTTCTCGTCGTCGGCGCCGGGCACGCAGGCATTGAGGCGGCA CTGGCAGCATCCCGTCTGGG
Product: DNA polymerase III, delta subunit
Products: diphosphate; DNAn+1
Alternate protein names: NA
Number of amino acids: Translated: 387; Mature: 386
Protein sequence:
>387_residues MTNTPFNKAYFMISCGYGFMGSSTLQQQAIHLVFGTDEGMVREKASGIFAALTEGTNEFSHEILEAACGDSDEAAQLVRQ VMEALRTLPFFPGRKVVWMKNCNFLGDSVTGRSSTTEAALDSFRQLLESGLGSDVLLLISASEFDKRRSFNKFLLQYAAS EELNKPDITKAGWEGSLMPLINKETAARGMNFDSAALELFIHRVSESSRQIISEIEKLDLYLGADRRTVMPEDVERMVPL TRTGVIFEISRALENKKSDAAISLIDFQLERGENAITIMRAAFIPTLRNLLAARLLCDAFNLKPTNFKEFTARISSLPSY AAALIPLKKDGTPNAYPLFLAAQNASKFKTERLKQTLKECMKADKALVSSSLDPRLILHRLAICSAS
Sequences:
>Translated_387_residues MTNTPFNKAYFMISCGYGFMGSSTLQQQAIHLVFGTDEGMVREKASGIFAALTEGTNEFSHEILEAACGDSDEAAQLVRQ VMEALRTLPFFPGRKVVWMKNCNFLGDSVTGRSSTTEAALDSFRQLLESGLGSDVLLLISASEFDKRRSFNKFLLQYAAS EELNKPDITKAGWEGSLMPLINKETAARGMNFDSAALELFIHRVSESSRQIISEIEKLDLYLGADRRTVMPEDVERMVPL TRTGVIFEISRALENKKSDAAISLIDFQLERGENAITIMRAAFIPTLRNLLAARLLCDAFNLKPTNFKEFTARISSLPSY AAALIPLKKDGTPNAYPLFLAAQNASKFKTERLKQTLKECMKADKALVSSSLDPRLILHRLAICSAS >Mature_386_residues TNTPFNKAYFMISCGYGFMGSSTLQQQAIHLVFGTDEGMVREKASGIFAALTEGTNEFSHEILEAACGDSDEAAQLVRQV MEALRTLPFFPGRKVVWMKNCNFLGDSVTGRSSTTEAALDSFRQLLESGLGSDVLLLISASEFDKRRSFNKFLLQYAASE ELNKPDITKAGWEGSLMPLINKETAARGMNFDSAALELFIHRVSESSRQIISEIEKLDLYLGADRRTVMPEDVERMVPLT RTGVIFEISRALENKKSDAAISLIDFQLERGENAITIMRAAFIPTLRNLLAARLLCDAFNLKPTNFKEFTARISSLPSYA AALIPLKKDGTPNAYPLFLAAQNASKFKTERLKQTLKECMKADKALVSSSLDPRLILHRLAICSAS
Specific function: Unknown
COG id: COG1466
COG function: function code L; DNA polymerase III, delta subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.7.7.7
Molecular weight: Translated: 42854; Mature: 42723
Theoretical pI: Translated: 7.37; Mature: 7.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNTPFNKAYFMISCGYGFMGSSTLQQQAIHLVFGTDEGMVREKASGIFAALTEGTNEFS CCCCCCCCEEEEEECCCCCCCCHHHHHCCEEEEEECCCCHHHHHHCCHHHHHHCCCHHHH HEILEAACGDSDEAAQLVRQVMEALRTLPFFPGRKVVWMKNCNFLGDSVTGRSSTTEAAL HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHH DSFRQLLESGLGSDVLLLISASEFDKRRSFNKFLLQYAASEELNKPDITKAGWEGSLMPL HHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC INKETAARGMNFDSAALELFIHRVSESSRQIISEIEKLDLYLGADRRTVMPEDVERMVPL CCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCC TRTGVIFEISRALENKKSDAAISLIDFQLERGENAITIMRAAFIPTLRNLLAARLLCDAF HHCCHHHHHHHHHCCCCCCCEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH NLKPTNFKEFTARISSLPSYAAALIPLKKDGTPNAYPLFLAAQNASKFKTERLKQTLKEC CCCCCCHHHHHHHHHHCCHHHHHEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH MKADKALVSSSLDPRLILHRLAICSAS HHHHHHHHHCCCCHHHHHHHHHHHCCC >Mature Secondary Structure TNTPFNKAYFMISCGYGFMGSSTLQQQAIHLVFGTDEGMVREKASGIFAALTEGTNEFS CCCCCCCEEEEEECCCCCCCCHHHHHCCEEEEEECCCCHHHHHHCCHHHHHHCCCHHHH HEILEAACGDSDEAAQLVRQVMEALRTLPFFPGRKVVWMKNCNFLGDSVTGRSSTTEAAL HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHH DSFRQLLESGLGSDVLLLISASEFDKRRSFNKFLLQYAASEELNKPDITKAGWEGSLMPL HHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC INKETAARGMNFDSAALELFIHRVSESSRQIISEIEKLDLYLGADRRTVMPEDVERMVPL CCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCC TRTGVIFEISRALENKKSDAAISLIDFQLERGENAITIMRAAFIPTLRNLLAARLLCDAF HHCCHHHHHHHHHCCCCCCCEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH NLKPTNFKEFTARISSLPSYAAALIPLKKDGTPNAYPLFLAAQNASKFKTERLKQTLKEC CCCCCCHHHHHHHHHHCCHHHHHEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH MKADKALVSSSLDPRLILHRLAICSAS HHHHHHHHHCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: deoxynucleoside triphosphate; DNAn
Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA