Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is yhhT [H]
Identifier: 187735225
GI number: 187735225
Start: 847992
End: 849104
Strand: Direct
Name: yhhT [H]
Synonym: Amuc_0719
Alternate gene names: 187735225
Gene position: 847992-849104 (Clockwise)
Preceding gene: 187735224
Following gene: 187735226
Centisome position: 31.83
GC content: 54.54
Gene sequence:
>1113_bases ATGACTTTTCAGAAAGAATCCGGAAAAGAGGGCCTGAAAATTCTGCTCATGCTCGCCAGCGTCATTATCATCACGGCCGG GCTGCAGGCGGGAAAACCGGTGCTCCTGCCCATCGTTCTATCCGGCTTTCTGGCAATCGTCAGTTATCCGCTGACGACTT TTTTCAAGAGCCGTCTTTGCTTCCCGCACTGGCTGGCAGTGACTTTCACGGTCATCATGGACTTTGGCATTCTGGTGGGC CTGGGCTATCTGGCCCAATACCTGGGGCAGGATCTGGCCAAAACGGTCACGGTCAAATACCAGCCTCTTATGATGGAGAA AATCCATGAACTCCGCGCTTTCCTGATTGAACAGGACTGGAACAACCTGGCTGACCAGATGCTTCAGGAACTTCCGGACC TGCTCAACGGCCAGCGCATCGTGGCGTTTTCCACAGGGGTGATGGGGCAGTTAGCTTCCATGCTGACCTTCACCACCCTG ATTCTGATCCTGATGACTTTCTTCCTGGGGGAAGCCCCCCGCTTCCGGGCGAACATCAATAAACTGGGGCATAACAGCGA CACAGGCATCCGCAAATTCTCCAAGGCCCTGGCCGGAGTTCAGAAATATCTCATTATTAAAACCTTCATCAGCGCAGTTA CAGGGCTTCTGGCTTTCCTGCTTTGCTATTACATGAACGTGGACTTTCCGCTGTTGTGGGGCATCGTGGCTTTCGCCCTC AACTTCATTCCCACCTTCGGCTCCATCATCGCGGCTATTCCCCCCACGCTTCTCGCCATGCTTCTGATCAGCCCGACTGC GGGCATCATTGTTGCCGGCGGCTACCTGGTGATTAACACAGCCCTGGGAAACTGCCTGGAACCCATGCTGTTGGGACGAC AATTCGGCATTGTGACCAGTATGGTTCTGCTCTCCGTCATCTTCTGGGGCTGGGTATGGGGCCCCATCGGCATGCTGCTG GCCGTACCCATTACCATGTTGATTAAACTCGGGCTGGAAAGCTCCAAGGATCTCGCCTGGATCGCCCAGCTCATTGACAA CCCTCCCACTCCCAGATTCCCTCTCCCCCCTCTCCATTCCGGGAAAACCAACGAAAGCACAACCAAGGAATAA
Upstream 100 bases:
>100_bases AACGTTTCTTCCGGGAACATCATGAAAATGAAGGCCTTTAAGATTGCAATCCTGCAGAAAACAGGCTATCATTACCCACC CCGTTAATATCAATCCTTCC
Downstream 100 bases:
>100_bases TCCATGCATTCATTCGCTTACAAAAACGGCACGCTCTACTGTGAAAACGTCAACCTTCAGGAACTGGCGGACAAGGAAAG CACACCCCTGTACGTTTATA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 370; Mature: 369
Protein sequence:
>370_residues MTFQKESGKEGLKILLMLASVIIITAGLQAGKPVLLPIVLSGFLAIVSYPLTTFFKSRLCFPHWLAVTFTVIMDFGILVG LGYLAQYLGQDLAKTVTVKYQPLMMEKIHELRAFLIEQDWNNLADQMLQELPDLLNGQRIVAFSTGVMGQLASMLTFTTL ILILMTFFLGEAPRFRANINKLGHNSDTGIRKFSKALAGVQKYLIIKTFISAVTGLLAFLLCYYMNVDFPLLWGIVAFAL NFIPTFGSIIAAIPPTLLAMLLISPTAGIIVAGGYLVINTALGNCLEPMLLGRQFGIVTSMVLLSVIFWGWVWGPIGMLL AVPITMLIKLGLESSKDLAWIAQLIDNPPTPRFPLPPLHSGKTNESTTKE
Sequences:
>Translated_370_residues MTFQKESGKEGLKILLMLASVIIITAGLQAGKPVLLPIVLSGFLAIVSYPLTTFFKSRLCFPHWLAVTFTVIMDFGILVG LGYLAQYLGQDLAKTVTVKYQPLMMEKIHELRAFLIEQDWNNLADQMLQELPDLLNGQRIVAFSTGVMGQLASMLTFTTL ILILMTFFLGEAPRFRANINKLGHNSDTGIRKFSKALAGVQKYLIIKTFISAVTGLLAFLLCYYMNVDFPLLWGIVAFAL NFIPTFGSIIAAIPPTLLAMLLISPTAGIIVAGGYLVINTALGNCLEPMLLGRQFGIVTSMVLLSVIFWGWVWGPIGMLL AVPITMLIKLGLESSKDLAWIAQLIDNPPTPRFPLPPLHSGKTNESTTKE >Mature_369_residues TFQKESGKEGLKILLMLASVIIITAGLQAGKPVLLPIVLSGFLAIVSYPLTTFFKSRLCFPHWLAVTFTVIMDFGILVGL GYLAQYLGQDLAKTVTVKYQPLMMEKIHELRAFLIEQDWNNLADQMLQELPDLLNGQRIVAFSTGVMGQLASMLTFTTLI LILMTFFLGEAPRFRANINKLGHNSDTGIRKFSKALAGVQKYLIIKTFISAVTGLLAFLLCYYMNVDFPLLWGIVAFALN FIPTFGSIIAAIPPTLLAMLLISPTAGIIVAGGYLVINTALGNCLEPMLLGRQFGIVTSMVLLSVIFWGWVWGPIGMLLA VPITMLIKLGLESSKDLAWIAQLIDNPPTPRFPLPPLHSGKTNESTTKE
Specific function: Unknown
COG id: COG0628
COG function: function code R; Predicted permease
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0118 (perM) family [H]
Homologues:
Organism=Escherichia coli, GI87082271, Length=353, Percent_Identity=31.4447592067989, Blast_Score=175, Evalue=3e-45, Organism=Escherichia coli, GI1787885, Length=339, Percent_Identity=33.0383480825959, Blast_Score=162, Evalue=2e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002549 [H]
Pfam domain/function: PF01594 UPF0118 [H]
EC number: NA
Molecular weight: Translated: 40626; Mature: 40495
Theoretical pI: Translated: 9.29; Mature: 9.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFQKESGKEGLKILLMLASVIIITAGLQAGKPVLLPIVLSGFLAIVSYPLTTFFKSRLC CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC FPHWLAVTFTVIMDFGILVGLGYLAQYLGQDLAKTVTVKYQPLMMEKIHELRAFLIEQDW CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH NNLADQMLQELPDLLNGQRIVAFSTGVMGQLASMLTFTTLILILMTFFLGEAPRFRANIN HHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH KLGHNSDTGIRKFSKALAGVQKYLIIKTFISAVTGLLAFLLCYYMNVDFPLLWGIVAFAL HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH NFIPTFGSIIAAIPPTLLAMLLISPTAGIIVAGGYLVINTALGNCLEPMLLGRQFGIVTS HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH MVLLSVIFWGWVWGPIGMLLAVPITMLIKLGLESSKDLAWIAQLIDNPPTPRFPLPPLHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC GKTNESTTKE CCCCCCCCCC >Mature Secondary Structure TFQKESGKEGLKILLMLASVIIITAGLQAGKPVLLPIVLSGFLAIVSYPLTTFFKSRLC CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC FPHWLAVTFTVIMDFGILVGLGYLAQYLGQDLAKTVTVKYQPLMMEKIHELRAFLIEQDW CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH NNLADQMLQELPDLLNGQRIVAFSTGVMGQLASMLTFTTLILILMTFFLGEAPRFRANIN HHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH KLGHNSDTGIRKFSKALAGVQKYLIIKTFISAVTGLLAFLLCYYMNVDFPLLWGIVAFAL HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH NFIPTFGSIIAAIPPTLLAMLLISPTAGIIVAGGYLVINTALGNCLEPMLLGRQFGIVTS HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH MVLLSVIFWGWVWGPIGMLLAVPITMLIKLGLESSKDLAWIAQLIDNPPTPRFPLPPLHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC GKTNESTTKE CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]