| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is 187734228
Identifier: 187734228
GI number: 187734228
Start: 3070387
End: 3071373
Strand: Reverse
Name: 187734228
Synonym: SbBS512_E3296
Alternate gene names: NA
Gene position: 3071373-3070387 (Counterclockwise)
Preceding gene: 187733179
Following gene: 187733254
Centisome position: 66.54
GC content: 52.99
Gene sequence:
>987_bases ATGACCATGACAAAAGACGCTTTACAGTTTGGCATTGAGCCAGTTCGCATTACTGATACTGACAACATGCAGGTAAACGA AGGTCTCCCGACTAACGCCGACCCTCAGGTCTATGCCTTCCAGTTAGCTAAGCTGGTGAAGACCATGCTCAATTCTGTAC TTAAAGACGCTCAGGATAACATTCCGTTCCCTGTAGAAGTCCTGCCGACCCGTAACAGCTTACCGACTCCAATCATTGCT CACACTCTGGCTGACCGCTCTGTGCTGGTCCCTGTCCGTGGTGGTAAGCGACCTGAAGTTGTGACCGCTCCGTCTGGCAC TGAAATCACCGTTGAGCCGATTGAACAGGCTATCCTCGTGTCTCACCAGACAAAGCTTTGGGACCAGAAGTCGACCACTG GTTTCACTCAGGGGACGCTCCAGCAGGACGCACTGAACATCTGCGATAACGTGGTTCGTACCATTAACTCTAAGATGGTT GACGTGCTGGAGTCCTCAAAGCTGCTGAAGACCGTAGAACTTCCGGCCCTGACTGGTAGCCTGACCGCTAAGGCTGACGC TATCATGGATGCCCTGTACGAGAACACGGAGTCTTCTTTCGGTTCTGAGGTTTCTGACTACGGCATCATCGCCCATGAGT CACACCTCAAGGCTCTCTCCCGTCTGGCTGCTAAGCAGGGCTTCGGTGGTGAAGACGCTATCGTCGATATGCTGGGAACA GACATCGCCTATTACAACGGTGAAGACCGTGGCGTCTTCATGATGGCTAAGCGCTTTACGGCTCTGAGCTTCGGCTGCTT CCGTCACGATGGCGAGAACGTTACGGTGGTCCTTTCACGTGATGGTGACTCCCAGTCTCACGACCTTGAGATTCTCGGCA AGGTGTTTGTTGTAGCTGAAGCTGCTACGACCATCAAGATGGGTACTGGCTCGGCTACTGCTGTCCTGCCTGTAGTCAAA CGCCTGAGCTTCACTAAAGACAGCTAG
Upstream 100 bases:
>100_bases GGATGGACAGCTTGTAAGCAAGCGACCCTCATCTGAGAACACACGGTCCCTGACTGCCTGTTAGGGACTTCAAGTATTTG ACTCAAGGAGATTAATTATT
Downstream 100 bases:
>100_bases GATTACTAGCGACAAGCTAACTAACAATAACGACTATTGGTCAGACTTCCGAACTGGATGTCTGGCCTTTATTTTGTACT AGCAATCTAGTTCGTGAATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 328; Mature: 327
Protein sequence:
>328_residues MTMTKDALQFGIEPVRITDTDNMQVNEGLPTNADPQVYAFQLAKLVKTMLNSVLKDAQDNIPFPVEVLPTRNSLPTPIIA HTLADRSVLVPVRGGKRPEVVTAPSGTEITVEPIEQAILVSHQTKLWDQKSTTGFTQGTLQQDALNICDNVVRTINSKMV DVLESSKLLKTVELPALTGSLTAKADAIMDALYENTESSFGSEVSDYGIIAHESHLKALSRLAAKQGFGGEDAIVDMLGT DIAYYNGEDRGVFMMAKRFTALSFGCFRHDGENVTVVLSRDGDSQSHDLEILGKVFVVAEAATTIKMGTGSATAVLPVVK RLSFTKDS
Sequences:
>Translated_328_residues MTMTKDALQFGIEPVRITDTDNMQVNEGLPTNADPQVYAFQLAKLVKTMLNSVLKDAQDNIPFPVEVLPTRNSLPTPIIA HTLADRSVLVPVRGGKRPEVVTAPSGTEITVEPIEQAILVSHQTKLWDQKSTTGFTQGTLQQDALNICDNVVRTINSKMV DVLESSKLLKTVELPALTGSLTAKADAIMDALYENTESSFGSEVSDYGIIAHESHLKALSRLAAKQGFGGEDAIVDMLGT DIAYYNGEDRGVFMMAKRFTALSFGCFRHDGENVTVVLSRDGDSQSHDLEILGKVFVVAEAATTIKMGTGSATAVLPVVK RLSFTKDS >Mature_327_residues TMTKDALQFGIEPVRITDTDNMQVNEGLPTNADPQVYAFQLAKLVKTMLNSVLKDAQDNIPFPVEVLPTRNSLPTPIIAH TLADRSVLVPVRGGKRPEVVTAPSGTEITVEPIEQAILVSHQTKLWDQKSTTGFTQGTLQQDALNICDNVVRTINSKMVD VLESSKLLKTVELPALTGSLTAKADAIMDALYENTESSFGSEVSDYGIIAHESHLKALSRLAAKQGFGGEDAIVDMLGTD IAYYNGEDRGVFMMAKRFTALSFGCFRHDGENVTVVLSRDGDSQSHDLEILGKVFVVAEAATTIKMGTGSATAVLPVVKR LSFTKDS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35461; Mature: 35330
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMTKDALQFGIEPVRITDTDNMQVNEGLPTNADPQVYAFQLAKLVKTMLNSVLKDAQDN CCCCHHHHHHCCCEEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC IPFPVEVLPTRNSLPTPIIAHTLADRSVLVPVRGGKRPEVVTAPSGTEITVEPIEQAILV CCCCEEEECCCCCCCCHHHHHHHCCCEEEEECCCCCCCCEEECCCCCEEEHHHHHHHHHH SHQTKLWDQKSTTGFTQGTLQQDALNICDNVVRTINSKMVDVLESSKLLKTVELPALTGS HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC LTAKADAIMDALYENTESSFGSEVSDYGIIAHESHLKALSRLAAKQGFGGEDAIVDMLGT HHHHHHHHHHHHHHHHHHHHCCCHHHCCEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHCC DIAYYNGEDRGVFMMAKRFTALSFGCFRHDGENVTVVLSRDGDSQSHDLEILGKVFVVAE CEEEECCCCCCEEEEEHHHHHHHHHHEEECCCCEEEEEECCCCCCCCHHHHHHHHHHEEE AATTIKMGTGSATAVLPVVKRLSFTKDS HHHEEEECCCCHHHHHHHHHHHHCCCCC >Mature Secondary Structure TMTKDALQFGIEPVRITDTDNMQVNEGLPTNADPQVYAFQLAKLVKTMLNSVLKDAQDN CCCHHHHHHCCCEEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC IPFPVEVLPTRNSLPTPIIAHTLADRSVLVPVRGGKRPEVVTAPSGTEITVEPIEQAILV CCCCEEEECCCCCCCCHHHHHHHCCCEEEEECCCCCCCCEEECCCCCEEEHHHHHHHHHH SHQTKLWDQKSTTGFTQGTLQQDALNICDNVVRTINSKMVDVLESSKLLKTVELPALTGS HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC LTAKADAIMDALYENTESSFGSEVSDYGIIAHESHLKALSRLAAKQGFGGEDAIVDMLGT HHHHHHHHHHHHHHHHHHHHCCCHHHCCEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHCC DIAYYNGEDRGVFMMAKRFTALSFGCFRHDGENVTVVLSRDGDSQSHDLEILGKVFVVAE CEEEECCCCCCEEEEEHHHHHHHHHHEEECCCCEEEEEECCCCCCCCHHHHHHHHHHEEE AATTIKMGTGSATAVLPVVKRLSFTKDS HHHEEEECCCCHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA