Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
---|---|
Accession | NC_010622 |
Length | 3,479,187 |
Click here to switch to the map view.
The map label for this gene is 186476729
Identifier: 186476729
GI number: 186476729
Start: 2225120
End: 2226334
Strand: Direct
Name: 186476729
Synonym: Bphy_1974
Alternate gene names: NA
Gene position: 2225120-2226334 (Clockwise)
Preceding gene: 186476724
Following gene: 186476730
Centisome position: 63.96
GC content: 65.68
Gene sequence:
>1215_bases ATGCGCTCGCGAATCGCCAAACGTCTCCCCCCCGATGCCGACAAGCTGGTCGGTCTGTCGCTCGCGCTCTTCGCGTCGGG TAGCCGCACCGAGGACCGCTTCTGGGAAGCCAAGCTCGACGCGTTGCTCGCAAAAATAGTCCGCAACGGCAACCAGACGA CGCTCGACGCCGCACTCGACCATCTTCAGCAGAATCATCCGGACGCCTACGGCGCCCTTGCCGACATGGCCGAAACGCAC AGCGAGTCGCTGATCGTCGAGCACGACGGCGTCCAGTATGAAGCGCTGTTGATCGCCGCGCCGGTGCTGGCCTGGACGCG CTATGTCATTCCGTCGGGCGCACTGAAAAGCGACGCGGCCGACGCATTGCGCGCGCAAATGCAGGCGCACGTGCTGGCTG CCGACACCCGCGTCGCGATGGCGCCCTTTATGTATAGCATCGACCAGTTGCCGCGTCACCAGGTCGAAACGTGGCGCCTC GCGCAGCAACTGGCGCAGGCGGCCGTCGCCGGCGCCAACGCGAAGATCAATTTCGGCGAATTGCCGGAAACCTCGCCCAT CCTGGCTGACCCGCGTTTCCTGCTGGCCGTTGTTGCGGCACCCGTCGGCGCGCCCGTGTTCCGCTGGCAGGAAGAAGAGC ACGGCTCGCGCATCGAACGCAGCCAGTGCCTCGAGCAGTGGGCGGCGCAAGGCGGCGCCAATCTGGCCGTCGTGCTGCCC GGTTGCGAATTCGAATGCCTGCTGCCGGACGCCTATTACTCGGCCTGCCGCGACGCCGACGAACGCGTGCGTCCGCACAC CGTCCGCACGGCGGTGCGCTACCTGTTCGACACGATCGGCGCAACGCCCGACGAACTGCGCGCCGTTGTCGCGGGCTTCG GCGAACGACGCATCGATGAATATCGCATCGGCTTCACGCGCCGCGGCAGCAACGACGTGATCTATGGCGTTGTGTGGCCG CTGTACGGGCGCGAGAACGGCGACCCGGGCATCGACGAGGAACCGCAGGAGGCGATGTCGCCCGAAGGTCCGCTCGAAGA CATCGTCGCGTTACTGAAGGAAACGGGTATCACCGATATCCGTCGCCACGCCGGCCGCTTTGAGCCGGAATATTGCGACG ACTGCGGCGTCCCGCTGTATGCGGATCCGCTCGGCGAGATCGTTCACGCCGAAATGCCGGAAGATGCCGAGCCTGCTCAA CCGCATTTCCACTGA
Upstream 100 bases:
>100_bases CCCGTATCCCGGAGGAATCTCTGCCTACGGCGCGTGTCGTTAATATGACGACGAAGAAACGACTAGAATATATGGTTCTC TGCACACAACCTCCGGATTT
Downstream 100 bases:
>100_bases TCACTTCGGAATTTTCTCTGTATCGAATCAGGCCCCGCCGCGCGCGGGGCTTTTTTTATGGCACTCGTCCTATGCCACTC GGACAGGCCGCCTGCCGACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 404; Mature: 404
Protein sequence:
>404_residues MRSRIAKRLPPDADKLVGLSLALFASGSRTEDRFWEAKLDALLAKIVRNGNQTTLDAALDHLQQNHPDAYGALADMAETH SESLIVEHDGVQYEALLIAAPVLAWTRYVIPSGALKSDAADALRAQMQAHVLAADTRVAMAPFMYSIDQLPRHQVETWRL AQQLAQAAVAGANAKINFGELPETSPILADPRFLLAVVAAPVGAPVFRWQEEEHGSRIERSQCLEQWAAQGGANLAVVLP GCEFECLLPDAYYSACRDADERVRPHTVRTAVRYLFDTIGATPDELRAVVAGFGERRIDEYRIGFTRRGSNDVIYGVVWP LYGRENGDPGIDEEPQEAMSPEGPLEDIVALLKETGITDIRRHAGRFEPEYCDDCGVPLYADPLGEIVHAEMPEDAEPAQ PHFH
Sequences:
>Translated_404_residues MRSRIAKRLPPDADKLVGLSLALFASGSRTEDRFWEAKLDALLAKIVRNGNQTTLDAALDHLQQNHPDAYGALADMAETH SESLIVEHDGVQYEALLIAAPVLAWTRYVIPSGALKSDAADALRAQMQAHVLAADTRVAMAPFMYSIDQLPRHQVETWRL AQQLAQAAVAGANAKINFGELPETSPILADPRFLLAVVAAPVGAPVFRWQEEEHGSRIERSQCLEQWAAQGGANLAVVLP GCEFECLLPDAYYSACRDADERVRPHTVRTAVRYLFDTIGATPDELRAVVAGFGERRIDEYRIGFTRRGSNDVIYGVVWP LYGRENGDPGIDEEPQEAMSPEGPLEDIVALLKETGITDIRRHAGRFEPEYCDDCGVPLYADPLGEIVHAEMPEDAEPAQ PHFH >Mature_404_residues MRSRIAKRLPPDADKLVGLSLALFASGSRTEDRFWEAKLDALLAKIVRNGNQTTLDAALDHLQQNHPDAYGALADMAETH SESLIVEHDGVQYEALLIAAPVLAWTRYVIPSGALKSDAADALRAQMQAHVLAADTRVAMAPFMYSIDQLPRHQVETWRL AQQLAQAAVAGANAKINFGELPETSPILADPRFLLAVVAAPVGAPVFRWQEEEHGSRIERSQCLEQWAAQGGANLAVVLP GCEFECLLPDAYYSACRDADERVRPHTVRTAVRYLFDTIGATPDELRAVVAGFGERRIDEYRIGFTRRGSNDVIYGVVWP LYGRENGDPGIDEEPQEAMSPEGPLEDIVALLKETGITDIRRHAGRFEPEYCDDCGVPLYADPLGEIVHAEMPEDAEPAQ PHFH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44479; Mature: 44479
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSRIAKRLPPDADKLVGLSLALFASGSRTEDRFWEAKLDALLAKIVRNGNQTTLDAALD CCCCHHHHCCCCHHHHHHHHHEEHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH HLQQNHPDAYGALADMAETHSESLIVEHDGVQYEALLIAAPVLAWTRYVIPSGALKSDAA HHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH DALRAQMQAHVLAADTRVAMAPFMYSIDQLPRHQVETWRLAQQLAQAAVAGANAKINFGE HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEECCC LPETSPILADPRFLLAVVAAPVGAPVFRWQEEEHGSRIERSQCLEQWAAQGGANLAVVLP CCCCCCCCCCHHHHHHHHHHHCCCHHHCCCCHHHCHHHHHHHHHHHHHHCCCCCEEEEEC GCEFECLLPDAYYSACRDADERVRPHTVRTAVRYLFDTIGATPDELRAVVAGFGERRIDE CCCEEEECCHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH YRIGFTRRGSNDVIYGVVWPLYGRENGDPGIDEEPQEAMSPEGPLEDIVALLKETGITDI HHCCEEECCCCCEEEEEEEEECCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCHHHH RRHAGRFEPEYCDDCGVPLYADPLGEIVHAEMPEDAEPAQPHFH HHHCCCCCCCHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MRSRIAKRLPPDADKLVGLSLALFASGSRTEDRFWEAKLDALLAKIVRNGNQTTLDAALD CCCCHHHHCCCCHHHHHHHHHEEHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH HLQQNHPDAYGALADMAETHSESLIVEHDGVQYEALLIAAPVLAWTRYVIPSGALKSDAA HHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH DALRAQMQAHVLAADTRVAMAPFMYSIDQLPRHQVETWRLAQQLAQAAVAGANAKINFGE HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEECCC LPETSPILADPRFLLAVVAAPVGAPVFRWQEEEHGSRIERSQCLEQWAAQGGANLAVVLP CCCCCCCCCCHHHHHHHHHHHCCCHHHCCCCHHHCHHHHHHHHHHHHHHCCCCCEEEEEC GCEFECLLPDAYYSACRDADERVRPHTVRTAVRYLFDTIGATPDELRAVVAGFGERRIDE CCCEEEECCHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH YRIGFTRRGSNDVIYGVVWPLYGRENGDPGIDEEPQEAMSPEGPLEDIVALLKETGITDI HHCCEEECCCCCEEEEEEEEECCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCHHHH RRHAGRFEPEYCDDCGVPLYADPLGEIVHAEMPEDAEPAQPHFH HHHCCCCCCCHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA