Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
---|---|
Accession | NC_010622 |
Length | 3,479,187 |
Click here to switch to the map view.
The map label for this gene is 186476673
Identifier: 186476673
GI number: 186476673
Start: 2165424
End: 2166110
Strand: Direct
Name: 186476673
Synonym: Bphy_1918
Alternate gene names: NA
Gene position: 2165424-2166110 (Clockwise)
Preceding gene: 186476672
Following gene: 186476674
Centisome position: 62.24
GC content: 62.3
Gene sequence:
>687_bases ATGACCGAATATCCAATGCTCGATGACAAGCTGGCGACGCTGCGCAACGCTATCGAAGACGGCGTAAAGGCAGACAGCGC TCAGTGCCTGTCGCTGATGGAACTGGTGGACGCAATCGGAGAACAGTTCAAGCGCGAGCTGGCCGAATTCGAGATGTCTC CAGAATTCACCGACAGCGCCCGCGCGGCGCTCGTATGGGTGCTCTACCACCATCAGGGCGGATCGTCGCCCGTCGGCCAG CCGATCAGGTTCGCGCTCGGCATGGGCGCGCACGATCCGCTGAAACCGGCTCAGATTGGCGAAGCGCTGAAACTCGCGGA GAAATGCCATTTCCCCGCGGCGCGAGATATTCCCGCAGCCCCTTCCGCGCCAGCCGTCGATGGAGCGAGCGCAGCCGATT TCGATTCGGCGCAAGCCGTGTGGAACGACTGGCTGAAACTGCGCGGGACGGACGTCGATTTCAAATCTCACAACGCGGCG ACCGAACTCGTGCGGTACGCAATGAACCGCACCGCACTATCCGCAGAGGCGGCGGCAGGGGAGCCGGTTGCTTACGTGCC GATCCATCCGAAGAACGGCCCGCTGTGGGCGAATACGGTGCCGACGCTCGATAGCGACCGTCCGAAGCATTACGAGACTC GCGCGCTGTATTTCACCGCCCCTCCAGCCGCTAAGAAAGGGGAATGA
Upstream 100 bases:
>100_bases GGATCTTTCCACTGCACTTGTCGTCGCCAACTTCGCGCACGAAAAGCAACTTGCCGGCGTCGCCGCCTGATCTGATCTAA CCGCAAGGACAACGATAACC
Downstream 100 bases:
>100_bases CATGGGCAAGCGATACGAGATCGACCCGCTGACGAACTACACGGTCGACGAGAATGGTTGCTGGATCTACCAAGGTCGGA AGGACGCATACGGCTATGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 228; Mature: 227
Protein sequence:
>228_residues MTEYPMLDDKLATLRNAIEDGVKADSAQCLSLMELVDAIGEQFKRELAEFEMSPEFTDSARAALVWVLYHHQGGSSPVGQ PIRFALGMGAHDPLKPAQIGEALKLAEKCHFPAARDIPAAPSAPAVDGASAADFDSAQAVWNDWLKLRGTDVDFKSHNAA TELVRYAMNRTALSAEAAAGEPVAYVPIHPKNGPLWANTVPTLDSDRPKHYETRALYFTAPPAAKKGE
Sequences:
>Translated_228_residues MTEYPMLDDKLATLRNAIEDGVKADSAQCLSLMELVDAIGEQFKRELAEFEMSPEFTDSARAALVWVLYHHQGGSSPVGQ PIRFALGMGAHDPLKPAQIGEALKLAEKCHFPAARDIPAAPSAPAVDGASAADFDSAQAVWNDWLKLRGTDVDFKSHNAA TELVRYAMNRTALSAEAAAGEPVAYVPIHPKNGPLWANTVPTLDSDRPKHYETRALYFTAPPAAKKGE >Mature_227_residues TEYPMLDDKLATLRNAIEDGVKADSAQCLSLMELVDAIGEQFKRELAEFEMSPEFTDSARAALVWVLYHHQGGSSPVGQP IRFALGMGAHDPLKPAQIGEALKLAEKCHFPAARDIPAAPSAPAVDGASAADFDSAQAVWNDWLKLRGTDVDFKSHNAAT ELVRYAMNRTALSAEAAAGEPVAYVPIHPKNGPLWANTVPTLDSDRPKHYETRALYFTAPPAAKKGE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24654; Mature: 24523
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEYPMLDDKLATLRNAIEDGVKADSAQCLSLMELVDAIGEQFKRELAEFEMSPEFTDSA CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH RAALVWVLYHHQGGSSPVGQPIRFALGMGAHDPLKPAQIGEALKLAEKCHFPAARDIPAA HHEEEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC PSAPAVDGASAADFDSAQAVWNDWLKLRGTDVDFKSHNAATELVRYAMNRTALSAEAAAG CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC EPVAYVPIHPKNGPLWANTVPTLDSDRPKHYETRALYFTAPPAAKKGE CCEEEEEEECCCCCEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCC >Mature Secondary Structure TEYPMLDDKLATLRNAIEDGVKADSAQCLSLMELVDAIGEQFKRELAEFEMSPEFTDSA CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH RAALVWVLYHHQGGSSPVGQPIRFALGMGAHDPLKPAQIGEALKLAEKCHFPAARDIPAA HHEEEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC PSAPAVDGASAADFDSAQAVWNDWLKLRGTDVDFKSHNAATELVRYAMNRTALSAEAAAG CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC EPVAYVPIHPKNGPLWANTVPTLDSDRPKHYETRALYFTAPPAAKKGE CCEEEEEEECCCCCEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA