Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
---|---|
Accession | NC_010622 |
Length | 3,479,187 |
Click here to switch to the map view.
The map label for this gene is 186476672
Identifier: 186476672
GI number: 186476672
Start: 2163786
End: 2165393
Strand: Direct
Name: 186476672
Synonym: Bphy_1917
Alternate gene names: NA
Gene position: 2163786-2165393 (Clockwise)
Preceding gene: 186476671
Following gene: 186476673
Centisome position: 62.19
GC content: 64.74
Gene sequence:
>1608_bases ATGAAACGCGATCTGATCAGCTTGCCGCTGGACCTCGGGAGCGAACTTATCATCGACAACTTCGCTGGCGGCGGTGGTGC GAGCACCGGCCTCGAGCGCGCGTTCGGCCGTCCCGTCGACGTCGCGATCAACCACGACCCGGAGGCGATCGCTATGCACA CGGCGAACCATCCGCACACCGCGCACTACTGCGAGAGCGTCTTCGGCGTTGATCCGATTGCAGTGACGCGTAATCAGCCC GCTGCGCTGGTGTGGCTGTCGCCCGACTGCAAGCACTTCAGCAAAGCGAAGGGCTCCACGCCGGTATCGAAGAAGATCCG AGGACTCGCGTGGATCGGCCTACGCTGGGCAGCGACGGTCAAGCCGCGCGTGATTATGCTCGAAAACGTTGAAGAGTTTC AGACGTGGGGCCCGTTGGCCGCCGACGGCCGCCCCGACCCGAAGCAGAAGGGCCGCACGTTCCGTTCGTTCGTAAATGCG CTTCGTGCGCAGGGTTACGTAGTCGACTGGCGCGAGCTGCGCGCCTGCGACTTCGGCGCGCCGACGATCCGCAAGCGCCT GTTTCTTGTCGCACGCCGCGATCATCTGCCCATCGTGTGGCCGACGCCCACGCACGGCGACCCGAAGAGCGCAGCCGTGC GCGCGGGGAAACTTCAACCGTGGCGCACTGCCGCAGAGTGCATCGACTGGTCGCTGCCCTGCCCGTCGATCTTCGAGCGC TCCAAGCCGCTGAAGGACGCGACGCTGCGCAGAATCGCGAAAGGCATCATGAAGTTCGTCGTGAATAGCGCCGATCCGTT CATCGTTTCGTATTACACGGCGGACGACCGTTTCCGTGGACAGCCTGTCGATGCCCCGCTCGGCACGCCGACGACAGCAA ACCGCTTCGCCGTCGTTGCGCCGACGCTCATGCACCTGACGCACCAGGGCGCTGATCGTAACGGCGATCTCAACCAACCG TTGGCGACGGTGACCGGCGCGCATCGCGGCGAGCAGGCGCTCGTGTCGGCGACGCTGATCCAGACGGGTTACGGCGAGCG CGAAGGCCAATCGCCGCGCGTTCCCGGCCTCGATAAGCCGCTCGGCACGGCCGTCGCGGGCGGCGTCAAGCATGCGGTCG TTTCTGCCTTCCTCGCGAAACACTATGGCGGCGTTGTCGGTACGGGCGTCGATGTGCCAACTGGCACCGTGACGACCACC GACCATCACTCGGTTGTGACGTCGCACTTGCTGAAGCTGCGCAACAACCAGTTTGGCCAGGACGTGCGCGAGCCGATGCC CACGCTTACAGCGGGCGGCGGCCACGTCGGCGAAGTGCGCACGCTGCTGCAGAAGTATCACGGCCCCGACGCGCTCGGCA TCGTAACGATCCGCGGCGAGCAATACGCAATCGTCGACATTGGCATGCGCATGCTCACGCCGCGCGAATTGGCGCGCGCC CAAGGATTTCCCGACAGCTACGTGCTCGACCCCGTGTTCGAAGGCAAGCCGCTCTCTAAGACTGCGCAAGTACGGATGAT CGGCAATAGCGTCTGCCCGGATCTTTCCACTGCACTTGTCGTCGCCAACTTCGCGCACGAAAAGCAACTTGCCGGCGTCG CCGCCTGA
Upstream 100 bases:
>100_bases AAATCAGGAAGTTCCTCGGCAAGTCACAGGCGCACGCGGCAGCAGTACGGAAGCAAATCAGCGGGCCGGCGCAACCGGCA ATCAACCAATAACCGAAAAC
Downstream 100 bases:
>100_bases TCTGATCTAACCGCAAGGACAACGATAACCATGACCGAATATCCAATGCTCGATGACAAGCTGGCGACGCTGCGCAACGC TATCGAAGACGGCGTAAAGG
Product: C-5 cytosine-specific DNA methylase
Products: NA
Alternate protein names: Site-Specific DNA Methylase; Methylase; DNA Cytosine Methyltransferase; C-5 Cytosine-Specific DNA Methylase Family Protein; DNA-Cytosine Methyltransferase; Cytosine-Specific Methylase; DNA Methylase; DNA-Methyltransferase; Prophage LambdaSo Type II DNA Methyltransferase; Cytosine-Specific Methyltransferase; Prophage DNA Cytosine Methylase; DNA Methyltransferase; DNA Cytosine Methyltransferase Family Protein; Site-Specific DNA-Methyltransferase; C-5 Cytosine-Specific DNA Methylase Superfamily; Type II Restriction- System DNA Cytosine-Specific Methylase
Number of amino acids: Translated: 535; Mature: 535
Protein sequence:
>535_residues MKRDLISLPLDLGSELIIDNFAGGGGASTGLERAFGRPVDVAINHDPEAIAMHTANHPHTAHYCESVFGVDPIAVTRNQP AALVWLSPDCKHFSKAKGSTPVSKKIRGLAWIGLRWAATVKPRVIMLENVEEFQTWGPLAADGRPDPKQKGRTFRSFVNA LRAQGYVVDWRELRACDFGAPTIRKRLFLVARRDHLPIVWPTPTHGDPKSAAVRAGKLQPWRTAAECIDWSLPCPSIFER SKPLKDATLRRIAKGIMKFVVNSADPFIVSYYTADDRFRGQPVDAPLGTPTTANRFAVVAPTLMHLTHQGADRNGDLNQP LATVTGAHRGEQALVSATLIQTGYGEREGQSPRVPGLDKPLGTAVAGGVKHAVVSAFLAKHYGGVVGTGVDVPTGTVTTT DHHSVVTSHLLKLRNNQFGQDVREPMPTLTAGGGHVGEVRTLLQKYHGPDALGIVTIRGEQYAIVDIGMRMLTPRELARA QGFPDSYVLDPVFEGKPLSKTAQVRMIGNSVCPDLSTALVVANFAHEKQLAGVAA
Sequences:
>Translated_535_residues MKRDLISLPLDLGSELIIDNFAGGGGASTGLERAFGRPVDVAINHDPEAIAMHTANHPHTAHYCESVFGVDPIAVTRNQP AALVWLSPDCKHFSKAKGSTPVSKKIRGLAWIGLRWAATVKPRVIMLENVEEFQTWGPLAADGRPDPKQKGRTFRSFVNA LRAQGYVVDWRELRACDFGAPTIRKRLFLVARRDHLPIVWPTPTHGDPKSAAVRAGKLQPWRTAAECIDWSLPCPSIFER SKPLKDATLRRIAKGIMKFVVNSADPFIVSYYTADDRFRGQPVDAPLGTPTTANRFAVVAPTLMHLTHQGADRNGDLNQP LATVTGAHRGEQALVSATLIQTGYGEREGQSPRVPGLDKPLGTAVAGGVKHAVVSAFLAKHYGGVVGTGVDVPTGTVTTT DHHSVVTSHLLKLRNNQFGQDVREPMPTLTAGGGHVGEVRTLLQKYHGPDALGIVTIRGEQYAIVDIGMRMLTPRELARA QGFPDSYVLDPVFEGKPLSKTAQVRMIGNSVCPDLSTALVVANFAHEKQLAGVAA >Mature_535_residues MKRDLISLPLDLGSELIIDNFAGGGGASTGLERAFGRPVDVAINHDPEAIAMHTANHPHTAHYCESVFGVDPIAVTRNQP AALVWLSPDCKHFSKAKGSTPVSKKIRGLAWIGLRWAATVKPRVIMLENVEEFQTWGPLAADGRPDPKQKGRTFRSFVNA LRAQGYVVDWRELRACDFGAPTIRKRLFLVARRDHLPIVWPTPTHGDPKSAAVRAGKLQPWRTAAECIDWSLPCPSIFER SKPLKDATLRRIAKGIMKFVVNSADPFIVSYYTADDRFRGQPVDAPLGTPTTANRFAVVAPTLMHLTHQGADRNGDLNQP LATVTGAHRGEQALVSATLIQTGYGEREGQSPRVPGLDKPLGTAVAGGVKHAVVSAFLAKHYGGVVGTGVDVPTGTVTTT DHHSVVTSHLLKLRNNQFGQDVREPMPTLTAGGGHVGEVRTLLQKYHGPDALGIVTIRGEQYAIVDIGMRMLTPRELARA QGFPDSYVLDPVFEGKPLSKTAQVRMIGNSVCPDLSTALVVANFAHEKQLAGVAA
Specific function: Unknown
COG id: COG0270
COG function: function code L; Site-specific DNA methylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57807; Mature: 57807
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: PS00237 G_PROTEIN_RECEP_F1_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRDLISLPLDLGSELIIDNFAGGGGASTGLERAFGRPVDVAINHDPEAIAMHTANHPHT CCCCCEECCHHCCCEEEEECCCCCCCCCHHHHHHCCCCEEEEECCCCCEEEEECCCCCCH AHYCESVFGVDPIAVTRNQPAALVWLSPDCKHFSKAKGSTPVSKKIRGLAWIGLRWAATV HHHHHHHHCCCCEEEECCCCEEEEEECCCHHHHHHCCCCCCHHHHHCCEEEEEEEEEEEC KPRVIMLENVEEFQTWGPLAADGRPDPKQKGRTFRSFVNALRAQGYVVDWRELRACDFGA CCEEEEECCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEHHHHHHCCCCC PTIRKRLFLVARRDHLPIVWPTPTHGDPKSAAVRAGKLQPWRTAAECIDWSLPCPSIFER HHHHHHHHEEEECCCCCEEECCCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHC SKPLKDATLRRIAKGIMKFVVNSADPFIVSYYTADDRFRGQPVDAPLGTPTTANRFAVVA CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEHH PTLMHLTHQGADRNGDLNQPLATVTGAHRGEQALVSATLIQTGYGEREGQSPRVPGLDKP HHHHHHHHCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC LGTAVAGGVKHAVVSAFLAKHYGGVVGTGVDVPTGTVTTTDHHSVVTSHLLKLRNNQFGQ HHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCEECCCHHHHHHHHHHHHHCCCCCH DVREPMPTLTAGGGHVGEVRTLLQKYHGPDALGIVTIRGEQYAIVDIGMRMLTPRELARA HHHCCCCCEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCHHHCCHHHHHHH QGFPDSYVLDPVFEGKPLSKTAQVRMIGNSVCPDLSTALVVANFAHEKQLAGVAA CCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKRDLISLPLDLGSELIIDNFAGGGGASTGLERAFGRPVDVAINHDPEAIAMHTANHPHT CCCCCEECCHHCCCEEEEECCCCCCCCCHHHHHHCCCCEEEEECCCCCEEEEECCCCCCH AHYCESVFGVDPIAVTRNQPAALVWLSPDCKHFSKAKGSTPVSKKIRGLAWIGLRWAATV HHHHHHHHCCCCEEEECCCCEEEEEECCCHHHHHHCCCCCCHHHHHCCEEEEEEEEEEEC KPRVIMLENVEEFQTWGPLAADGRPDPKQKGRTFRSFVNALRAQGYVVDWRELRACDFGA CCEEEEECCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEHHHHHHCCCCC PTIRKRLFLVARRDHLPIVWPTPTHGDPKSAAVRAGKLQPWRTAAECIDWSLPCPSIFER HHHHHHHHEEEECCCCCEEECCCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHC SKPLKDATLRRIAKGIMKFVVNSADPFIVSYYTADDRFRGQPVDAPLGTPTTANRFAVVA CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEHH PTLMHLTHQGADRNGDLNQPLATVTGAHRGEQALVSATLIQTGYGEREGQSPRVPGLDKP HHHHHHHHCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC LGTAVAGGVKHAVVSAFLAKHYGGVVGTGVDVPTGTVTTTDHHSVVTSHLLKLRNNQFGQ HHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCEECCCHHHHHHHHHHHHHCCCCCH DVREPMPTLTAGGGHVGEVRTLLQKYHGPDALGIVTIRGEQYAIVDIGMRMLTPRELARA HHHCCCCCEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCHHHCCHHHHHHH QGFPDSYVLDPVFEGKPLSKTAQVRMIGNSVCPDLSTALVVANFAHEKQLAGVAA CCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA