Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
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Accession | NC_010602 |
Length | 3,599,677 |
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The map label for this gene is rlpA [H]
Identifier: 183222587
GI number: 183222587
Start: 3356137
End: 3357018
Strand: Direct
Name: rlpA [H]
Synonym: LEPBI_I3242
Alternate gene names: 183222587
Gene position: 3356137-3357018 (Clockwise)
Preceding gene: 183222584
Following gene: 183222588
Centisome position: 93.23
GC content: 42.29
Gene sequence:
>882_bases ATGCAAAGACTCATACTCATTACCATTTTATTGTGGTTGGTGTCCTGCAGTTCTGCTGATGCCACACGTAGGGATTATAG TGCTTCTGGTGATCCAGAGGATATTTTCTTCGAACGTTCACAAAAATCGAAACCTACCGGAACAAATGGATCGAACGACC CAGTGGCAAGATCCATCATGGATGATTTGGAAACAAAATCCAAACAAACCACCACAGCCCAGGCAGACCTACCAACAAAA AAACCAACCACTCAATTCGATGAAGTGGGTTTATCCTCTTGGTATGGACAAAAGTTCCAAGGACGTCCAACAGCAAGTGG TGAACCATTTGATCGCATGAAAATGACGGGAGCACACCGAACCCTTCCCATTGGTACCGTTGTGAAAATCCAAAACCTAG AAAACCAAAAGGAAGCTGTGGTTCGTATCAATGACAGAGGGCCATTTGTGGATGAAAGGATTGTGGATGTTTCCGAAAAA ACAGCAGAAATCTTAGAATTTAAAGACAAAGGGATCACAAAAGTTGGCATCAAAGTTCTCAAAAAAGGCGAAGATGAACT AGCAGATGATTTAGATGATTCTGACCTTTTAGACGATACCCCAGCAAAACCTGAAAAATTGACTCCTGTCAAACCTGGTG TCACAAAACCAATTGCTGCGGGAAAAGGATTTACGGTCCAAGTTGGCGTTTTCCAAGAAAAAGAAAGAGCCATCAAATAC CAAGAAACCATCAAATCTGAGTACAACCAAACCGTCTTTGTCACTCCAAGAGATGGAAAATACGTCGTTCAAGTGGGGGA TTTCGCAGACCGTTCCAAGGCTGAATCTCTCAAATCAAAATTGAAATACGATGGGATTGATTGTTTTATCGCAACCCGTT AG
Upstream 100 bases:
>100_bases GATTATCGTTTCGGAATTCATTCTCCCCTAGAATTTTTATCACGCATTTAGAAAAACCTTCCGAAAGGTACACACAAGAG TCCAGAGAAAGGGGAAAATT
Downstream 100 bases:
>100_bases ACATTTCCCCTTTCTTCCGAGCAAAAAAGTACAGTTCTGATTTGCTCGGAGTGGGTGGAAAATGAATTGATTTCACATTT TCTCCTGTTACGATTTCGTA
Product: putative lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 293; Mature: 293
Protein sequence:
>293_residues MQRLILITILLWLVSCSSADATRRDYSASGDPEDIFFERSQKSKPTGTNGSNDPVARSIMDDLETKSKQTTTAQADLPTK KPTTQFDEVGLSSWYGQKFQGRPTASGEPFDRMKMTGAHRTLPIGTVVKIQNLENQKEAVVRINDRGPFVDERIVDVSEK TAEILEFKDKGITKVGIKVLKKGEDELADDLDDSDLLDDTPAKPEKLTPVKPGVTKPIAAGKGFTVQVGVFQEKERAIKY QETIKSEYNQTVFVTPRDGKYVVQVGDFADRSKAESLKSKLKYDGIDCFIATR
Sequences:
>Translated_293_residues MQRLILITILLWLVSCSSADATRRDYSASGDPEDIFFERSQKSKPTGTNGSNDPVARSIMDDLETKSKQTTTAQADLPTK KPTTQFDEVGLSSWYGQKFQGRPTASGEPFDRMKMTGAHRTLPIGTVVKIQNLENQKEAVVRINDRGPFVDERIVDVSEK TAEILEFKDKGITKVGIKVLKKGEDELADDLDDSDLLDDTPAKPEKLTPVKPGVTKPIAAGKGFTVQVGVFQEKERAIKY QETIKSEYNQTVFVTPRDGKYVVQVGDFADRSKAESLKSKLKYDGIDCFIATR >Mature_293_residues MQRLILITILLWLVSCSSADATRRDYSASGDPEDIFFERSQKSKPTGTNGSNDPVARSIMDDLETKSKQTTTAQADLPTK KPTTQFDEVGLSSWYGQKFQGRPTASGEPFDRMKMTGAHRTLPIGTVVKIQNLENQKEAVVRINDRGPFVDERIVDVSEK TAEILEFKDKGITKVGIKVLKKGEDELADDLDDSDLLDDTPAKPEKLTPVKPGVTKPIAAGKGFTVQVGVFQEKERAIKY QETIKSEYNQTVFVTPRDGKYVVQVGDFADRSKAESLKSKLKYDGIDCFIATR
Specific function: Unknown
COG id: COG0797
COG function: function code M; Lipoproteins
Gene ontology:
Cell location: Attached To The Membrane By A Lipid Anchor [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the rlpA family [H]
Homologues:
Organism=Escherichia coli, GI1786852, Length=102, Percent_Identity=39.2156862745098, Blast_Score=77, Evalue=9e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009009 - InterPro: IPR022438 - InterPro: IPR012997 [H]
Pfam domain/function: PF03330 DPBB_1 [H]
EC number: NA
Molecular weight: Translated: 32545; Mature: 32545
Theoretical pI: Translated: 6.15; Mature: 6.15
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRLILITILLWLVSCSSADATRRDYSASGDPEDIFFERSQKSKPTGTNGSNDPVARSIM CCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCHHHHEECCCCCCCCCCCCCCCHHHHHHH DDLETKSKQTTTAQADLPTKKPTTQFDEVGLSSWYGQKFQGRPTASGEPFDRMKMTGAHR HHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCCCCCCCCHHHHHHCCCCC TLPIGTVVKIQNLENQKEAVVRINDRGPFVDERIVDVSEKTAEILEFKDKGITKVGIKVL CCCCCEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH KKGEDELADDLDDSDLLDDTPAKPEKLTPVKPGVTKPIAAGKGFTVQVGVFQEKERAIKY HCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH QETIKSEYNQTVFVTPRDGKYVVQVGDFADRSKAESLKSKLKYDGIDCFIATR HHHHHHHCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECC >Mature Secondary Structure MQRLILITILLWLVSCSSADATRRDYSASGDPEDIFFERSQKSKPTGTNGSNDPVARSIM CCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCHHHHEECCCCCCCCCCCCCCCHHHHHHH DDLETKSKQTTTAQADLPTKKPTTQFDEVGLSSWYGQKFQGRPTASGEPFDRMKMTGAHR HHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCCCCCCCCHHHHHHCCCCC TLPIGTVVKIQNLENQKEAVVRINDRGPFVDERIVDVSEKTAEILEFKDKGITKVGIKVL CCCCCEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH KKGEDELADDLDDSDLLDDTPAKPEKLTPVKPGVTKPIAAGKGFTVQVGVFQEKERAIKY HCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH QETIKSEYNQTVFVTPRDGKYVVQVGDFADRSKAESLKSKLKYDGIDCFIATR HHHHHHHCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA