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The map label for this gene is 183222369

Identifier: 183222369

GI number: 183222369

Start: 3135289

End: 3135864

Strand: Reverse

Name: 183222369

Synonym: LEPBI_I3023

Alternate gene names: NA

Gene position: 3135864-3135289 (Counterclockwise)

Preceding gene: 183222370

Following gene: 183222357

Centisome position: 87.12

GC content: 34.55

Gene sequence:

>576_bases
TTGGATCGTAGCCGTTTAATCAAAATTAGTTTCCTATATTTAATTTTTCAAATCTTTTGTTTATTTGGGTGTCAATCCAA
ATCAGAGATAAACCAAGAAGTTTGGAGCAGGTTAGGATTTGTTCTCCCCAATGGCGAGAGTTTAGATCCAAAATTTTGGA
AAGAGAAAAAATCGGTATTGTACTTTGGATTTTCCCATTGTCCAGATATGTGTCCACTTGCCTTAACGAATTTTGGAAGG
GCATCATTGATTTTAGGAGAAAAAGCGAAAGACTATCGATTTGTTTTTATTACGTTAGATCCCGAAAGAGATTCACCTTC
AACTTTAGATAAATACGTACAAAACTTTCCAAGTAAAAATTTGACTGCTCTTTCACCCAATGTAGAAAGTTTGGAAGCAC
TCACTAGTATGTTTGGAATTGTCAGAGAAAAAGTAGGAGAAGGGAAATCTTACCGAATTGATCATTCAAATTTTATTTAT
GTTTTGGATGAAAAACTAAATACAATCAAAACATTTCCAGGTGGAGTTTCTGCCAATGCACTGGCTACTGAACTTAGGAA
GTTATCTGCACCTTAG

Upstream 100 bases:

>100_bases
GTCAAACGGAACGAGTGGTCATTGAGTTTGTATTAAAGAAGAAAGGGAGATATATGTTTCATCCCCATCAAACTCATATG
GCAGAAAATGGAGGAATGGG

Downstream 100 bases:

>100_bases
ATGTTAAGATAATTTCAATTTCTGATCTAGTACCTTCCGGATAGTTTCTCGTGATTTCAAAATGAAATTCTGAATATAAG
TTTTTTAATCTTTCTTTTAT

Product: SenC family respiratory system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MDRSRLIKISFLYLIFQIFCLFGCQSKSEINQEVWSRLGFVLPNGESLDPKFWKEKKSVLYFGFSHCPDMCPLALTNFGR
ASLILGEKAKDYRFVFITLDPERDSPSTLDKYVQNFPSKNLTALSPNVESLEALTSMFGIVREKVGEGKSYRIDHSNFIY
VLDEKLNTIKTFPGGVSANALATELRKLSAP

Sequences:

>Translated_191_residues
MDRSRLIKISFLYLIFQIFCLFGCQSKSEINQEVWSRLGFVLPNGESLDPKFWKEKKSVLYFGFSHCPDMCPLALTNFGR
ASLILGEKAKDYRFVFITLDPERDSPSTLDKYVQNFPSKNLTALSPNVESLEALTSMFGIVREKVGEGKSYRIDHSNFIY
VLDEKLNTIKTFPGGVSANALATELRKLSAP
>Mature_191_residues
MDRSRLIKISFLYLIFQIFCLFGCQSKSEINQEVWSRLGFVLPNGESLDPKFWKEKKSVLYFGFSHCPDMCPLALTNFGR
ASLILGEKAKDYRFVFITLDPERDSPSTLDKYVQNFPSKNLTALSPNVESLEALTSMFGIVREKVGEGKSYRIDHSNFIY
VLDEKLNTIKTFPGGVSANALATELRKLSAP

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6319498, Length=126, Percent_Identity=34.9206349206349, Blast_Score=69, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6319511, Length=114, Percent_Identity=37.719298245614, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 21651; Mature: 21651

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRSRLIKISFLYLIFQIFCLFGCQSKSEINQEVWSRLGFVLPNGESLDPKFWKEKKSVL
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCEECCCCCCCCHHHHHCCCCEE
YFGFSHCPDMCPLALTNFGRASLILGEKAKDYRFVFITLDPERDSPSTLDKYVQNFPSKN
EECHHCCCCCCHHHHHCCCCEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCC
LTALSPNVESLEALTSMFGIVREKVGEGKSYRIDHSNFIYVLDEKLNTIKTFPGGVSANA
CEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEECCCHHHHCCCCCCCHHH
LATELRKLSAP
HHHHHHHHCCC
>Mature Secondary Structure
MDRSRLIKISFLYLIFQIFCLFGCQSKSEINQEVWSRLGFVLPNGESLDPKFWKEKKSVL
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCEECCCCCCCCHHHHHCCCCEE
YFGFSHCPDMCPLALTNFGRASLILGEKAKDYRFVFITLDPERDSPSTLDKYVQNFPSKN
EECHHCCCCCCHHHHHCCCCEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCC
LTALSPNVESLEALTSMFGIVREKVGEGKSYRIDHSNFIYVLDEKLNTIKTFPGGVSANA
CEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEECCCHHHHCCCCCCCHHH
LATELRKLSAP
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA