| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is pbpD [H]
Identifier: 183222351
GI number: 183222351
Start: 3111277
End: 3113466
Strand: Reverse
Name: pbpD [H]
Synonym: LEPBI_I3004
Alternate gene names: 183222351
Gene position: 3113466-3111277 (Counterclockwise)
Preceding gene: 183222352
Following gene: 183222350
Centisome position: 86.49
GC content: 35.43
Gene sequence:
>2190_bases GTGAAGGGAAATTTCTTCCGAACAATCAAAATCCTAATCCCAAGTATATTCATTGTATTGGGATTGGGTTTTTTACTGAG GCCGATCGATTCTCATGTTTTTAAAAAACAAATCACAACAAGGATTTTAACGAAAGAAAAACACATCATTGGTCGCTCCA TCAATGAGATACAAACAAAACAAGATTGGGAATCATTCGATGAATACCCGGATTTTGTATCAAAAATTGTGTTAATTGCC GAAGACAAACGATTTGAATCCCATCATGGGATTGATCTATTAGCCCTTTCCAATTCGATTTATTCTTACCTATTTTCCAA AGAGAATCGCGGAGGTGGATCTACAATTACGATGCAACTCACAAGGATCGTGTATCCAGAAATCCGCAACTATCCAATTG TTGTTCGAAAATTTTTTGAAGTGATCACGGCTTTACGTTTTGAACTATGGATGACAAAACAAGAAATTTTAGAAGCTTAC TTAAATTCAGTTTCATTACATTCTAATATTGTTGGTTTTCCATCTGCTTCCTTACAGTTATTTGATAAACACATCCGATT TTTATCAGTTGAAGAAGCAGTTTATTTGACTGTATTGATTCGAAAAAATCATTCTACAAATGAAGAAATCAGATTTCGAT ACAACCAACTACGTGAAAAAATACCTTTCCTGATTCCTTACTTAGAAAATCCAAAAGACTTAACGATAGATACACAAAAA GAAAATAAAAATGAATTGAATACCCAATTCAAAGGGGAAAACCAACACTTTCTCAATTGGATTCGCGTCCTAAATCCATT GCCTGATGGTGAATTTGTGGCAACGATTTCTTCCCAATTGAATACGGAAGTTCATTCGATAGTCAATTCTGAGTTAGAAG GCTTAAAACGATGGAATGTGAGTAATGCTTCTGCTTTAGTTTTAGAAAAAAATCCAAATCATTCCGATGAATTATCGTTA GTAGCCATGATTGGCTCAAAAAACTTTTTTGAAGAAGGGAATGGTATGGTTAATGGGTCATTGGCATTTCGTGATGCAGG AAGTACCTTAAAACCATTATTATATGGATATGCAATTGATAAAAAAATTTATACAGTCAATTCGATACTTTCCGATGAAA AGTTTTCTTATCCGATTGGGTTTGTTGGGAATTACCTTCCTAGAAATGCTGACCTTCGTTATTGGGGGGATATCACTCTT GCGGAAGCATTGGGAAATTCCAGAAACATCCCTGCAGTCACAACCATACAACGGATAGGTGTCCCTGTCTTTTACCAATT TTTAATTGGTGCTGGGTTTTTGCACCTAAAGGAGTCACCTAGTTTTTATGGACCGGGGCTTGCGTTAGGAACAGGCGGTG CTAGTTTATTACAACTTTCAAGAAGTTATGGGACATTTATGTTAGGTGGCATTTTGCCAAAAATCCGTTTAGGATATTTA AAAGAAGTTCCTTTTTATTATGGTGAAAGTAAACGATTGTTATCGGAAGAAACAGCAGAAGAAATTAAATTTATTCTCAG TGATGCAAAACTTAGGCAAAGGGCTTTCGGAAGAAGGAGTTATTTAAACTTTCCTTTCCCCGTATCAATTAAAACGGGAA CATCCAAAGACTATCGAAACTCGTGGACAGTTGCATTTAATGATCGTTATGTAGTCGCCGCATGGGTTGGAAATTTTTCT GGTGAAAAGACGATGGATGTATCCGGATCGTTTGGTGCTGGTAGAATGGTTCAAAATATTTTTCGAATTTTAATGGATGA TAAACCTAAATCAGTTTATACACCTAAGTTTACTGAAGTACGAAATTTTTGTAAGTTAACGGGTAAGTCGGCAACGATCC AATGTCCTTCTATATCATTACGTGTTCGAAAAGAGATGATCCAATCGGAAATATGCGATCAACATAGCATAGGTGGAGAA AGTTCTGTCATCGGAGCCAGATTTGTATATCCATCCAATGGACAAGTGTATTTATACCATCCTTCGCATGAAAAAGAAAA ACAAAAGATACCCATTCGTATTAGAGAAATCAAAACATTAAAAAATCCAAAATTGATCTGGAACCAAACAAAAGAGATTC AATTGTCCATTCATGGTGAAGGAAGTTTGTCTATCGAAAGAGGGAAACAAAATTTGGAATTGTTTGATGGTGTTATCAAA AAAGCTAGTGTTCAGTTTGAAGTTAAGTAA
Upstream 100 bases:
>100_bases CAGTTGCGAAAGGGAATGCGACAATGCCAGCCTCTAAAACATTTTTGATGTATCATCCTGAGTTTTACGGCAATACAAGT TCTTTAAAAGTGAAAGTGGA
Downstream 100 bases:
>100_bases ATTAAACGATTTTTTTCTAACTTCTCGTAGCAAGTGGTTTGTTTTTTATGGGATTTTATATCTATTCCATTTTCCTGGTG ATTGGAATTGGTTGGGATGG
Product: putative penicillin-binding protein
Products: NA
Alternate protein names: PBP 4 [H]
Number of amino acids: Translated: 729; Mature: 729
Protein sequence:
>729_residues MKGNFFRTIKILIPSIFIVLGLGFLLRPIDSHVFKKQITTRILTKEKHIIGRSINEIQTKQDWESFDEYPDFVSKIVLIA EDKRFESHHGIDLLALSNSIYSYLFSKENRGGGSTITMQLTRIVYPEIRNYPIVVRKFFEVITALRFELWMTKQEILEAY LNSVSLHSNIVGFPSASLQLFDKHIRFLSVEEAVYLTVLIRKNHSTNEEIRFRYNQLREKIPFLIPYLENPKDLTIDTQK ENKNELNTQFKGENQHFLNWIRVLNPLPDGEFVATISSQLNTEVHSIVNSELEGLKRWNVSNASALVLEKNPNHSDELSL VAMIGSKNFFEEGNGMVNGSLAFRDAGSTLKPLLYGYAIDKKIYTVNSILSDEKFSYPIGFVGNYLPRNADLRYWGDITL AEALGNSRNIPAVTTIQRIGVPVFYQFLIGAGFLHLKESPSFYGPGLALGTGGASLLQLSRSYGTFMLGGILPKIRLGYL KEVPFYYGESKRLLSEETAEEIKFILSDAKLRQRAFGRRSYLNFPFPVSIKTGTSKDYRNSWTVAFNDRYVVAAWVGNFS GEKTMDVSGSFGAGRMVQNIFRILMDDKPKSVYTPKFTEVRNFCKLTGKSATIQCPSISLRVRKEMIQSEICDQHSIGGE SSVIGARFVYPSNGQVYLYHPSHEKEKQKIPIRIREIKTLKNPKLIWNQTKEIQLSIHGEGSLSIERGKQNLELFDGVIK KASVQFEVK
Sequences:
>Translated_729_residues MKGNFFRTIKILIPSIFIVLGLGFLLRPIDSHVFKKQITTRILTKEKHIIGRSINEIQTKQDWESFDEYPDFVSKIVLIA EDKRFESHHGIDLLALSNSIYSYLFSKENRGGGSTITMQLTRIVYPEIRNYPIVVRKFFEVITALRFELWMTKQEILEAY LNSVSLHSNIVGFPSASLQLFDKHIRFLSVEEAVYLTVLIRKNHSTNEEIRFRYNQLREKIPFLIPYLENPKDLTIDTQK ENKNELNTQFKGENQHFLNWIRVLNPLPDGEFVATISSQLNTEVHSIVNSELEGLKRWNVSNASALVLEKNPNHSDELSL VAMIGSKNFFEEGNGMVNGSLAFRDAGSTLKPLLYGYAIDKKIYTVNSILSDEKFSYPIGFVGNYLPRNADLRYWGDITL AEALGNSRNIPAVTTIQRIGVPVFYQFLIGAGFLHLKESPSFYGPGLALGTGGASLLQLSRSYGTFMLGGILPKIRLGYL KEVPFYYGESKRLLSEETAEEIKFILSDAKLRQRAFGRRSYLNFPFPVSIKTGTSKDYRNSWTVAFNDRYVVAAWVGNFS GEKTMDVSGSFGAGRMVQNIFRILMDDKPKSVYTPKFTEVRNFCKLTGKSATIQCPSISLRVRKEMIQSEICDQHSIGGE SSVIGARFVYPSNGQVYLYHPSHEKEKQKIPIRIREIKTLKNPKLIWNQTKEIQLSIHGEGSLSIERGKQNLELFDGVIK KASVQFEVK >Mature_729_residues MKGNFFRTIKILIPSIFIVLGLGFLLRPIDSHVFKKQITTRILTKEKHIIGRSINEIQTKQDWESFDEYPDFVSKIVLIA EDKRFESHHGIDLLALSNSIYSYLFSKENRGGGSTITMQLTRIVYPEIRNYPIVVRKFFEVITALRFELWMTKQEILEAY LNSVSLHSNIVGFPSASLQLFDKHIRFLSVEEAVYLTVLIRKNHSTNEEIRFRYNQLREKIPFLIPYLENPKDLTIDTQK ENKNELNTQFKGENQHFLNWIRVLNPLPDGEFVATISSQLNTEVHSIVNSELEGLKRWNVSNASALVLEKNPNHSDELSL VAMIGSKNFFEEGNGMVNGSLAFRDAGSTLKPLLYGYAIDKKIYTVNSILSDEKFSYPIGFVGNYLPRNADLRYWGDITL AEALGNSRNIPAVTTIQRIGVPVFYQFLIGAGFLHLKESPSFYGPGLALGTGGASLLQLSRSYGTFMLGGILPKIRLGYL KEVPFYYGESKRLLSEETAEEIKFILSDAKLRQRAFGRRSYLNFPFPVSIKTGTSKDYRNSWTVAFNDRYVVAAWVGNFS GEKTMDVSGSFGAGRMVQNIFRILMDDKPKSVYTPKFTEVRNFCKLTGKSATIQCPSISLRVRKEMIQSEICDQHSIGGE SSVIGARFVYPSNGQVYLYHPSHEKEKQKIPIRIREIKTLKNPKLIWNQTKEIQLSIHGEGSLSIERGKQNLELFDGVIK KASVQFEVK
Specific function: Cell Wall Formation. The Enzyme Has A Penicillin- Insensitive Transglycosylase N-Terminal Domain (Formation Of Linear Glycan Strands) And A Transpeptidase C-Terminal Domain Which May Not Be Functional. [C]
COG id: COG4953
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein PbpC
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1788867, Length=538, Percent_Identity=26.9516728624535, Blast_Score=137, Evalue=2e-33, Organism=Escherichia coli, GI1786343, Length=562, Percent_Identity=24.9110320284698, Blast_Score=104, Evalue=2e-23, Organism=Escherichia coli, GI87082258, Length=145, Percent_Identity=33.7931034482759, Blast_Score=75, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-
Molecular weight: Translated: 83032; Mature: 83032
Theoretical pI: Translated: 9.76; Mature: 9.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGNFFRTIKILIPSIFIVLGLGFLLRPIDSHVFKKQITTRILTKEKHIIGRSINEIQTK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH QDWESFDEYPDFVSKIVLIAEDKRFESHHGIDLLALSNSIYSYLFSKENRGGGSTITMQL HHHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCEEEEEE TRIVYPEIRNYPIVVRKFFEVITALRFELWMTKQEILEAYLNSVSLHSNIVGFPSASLQL EEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCEECCCCHHHHH FDKHIRFLSVEEAVYLTVLIRKNHSTNEEIRFRYNQLREKIPFLIPYLENPKDLTIDTQK HHHHHHHEEECCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCEEECCC ENKNELNTQFKGENQHFLNWIRVLNPLPDGEFVATISSQLNTEVHSIVNSELEGLKRWNV CCCHHCCCEECCCCHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCC SNASALVLEKNPNHSDELSLVAMIGSKNFFEEGNGMVNGSLAFRDAGSTLKPLLYGYAID CCCEEEEEECCCCCCCCEEEEEEECCCCHHHCCCCEEECEEEEECCCCHHHHHHHHEECC KKIYTVNSILSDEKFSYPIGFVGNYLPRNADLRYWGDITLAEALGNSRNIPAVTTIQRIG CEEEEHHHHHCCCCCCCCHHHHHCCCCCCCCEEEECCEEHHHHCCCCCCCCHHHHHHHHC VPVFYQFLIGAGFLHLKESPSFYGPGLALGTGGASLLQLSRSYGTFMLGGILPKIRLGYL HHHHHHHHHCCCEEEEECCCCCCCCCEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH KEVPFYYGESKRLLSEETAEEIKFILSDAKLRQRAFGRRSYLNFPFPVSIKTGTSKDYRN HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCC SWTVAFNDRYVVAAWVGNFSGEKTMDVSGSFGAGRMVQNIFRILMDDKPKSVYTPKFTEV CEEEEECCCEEEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHH RNFCKLTGKSATIQCPSISLRVRKEMIQSEICDQHSIGGESSVIGARFVYPSNGQVYLYH HHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCHHCCCCCCCEEEEEEEECCCCEEEEEC PSHEKEKQKIPIRIREIKTLKNPKLIWNQTKEIQLSIHGEGSLSIERGKQNLELFDGVIK CCCCCCCCCCCEEEEEHHHCCCCCEEECCCEEEEEEEECCCCEEEECCCCHHHHHHHHHH KASVQFEVK HCCEEEEEC >Mature Secondary Structure MKGNFFRTIKILIPSIFIVLGLGFLLRPIDSHVFKKQITTRILTKEKHIIGRSINEIQTK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH QDWESFDEYPDFVSKIVLIAEDKRFESHHGIDLLALSNSIYSYLFSKENRGGGSTITMQL HHHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCEEEEEE TRIVYPEIRNYPIVVRKFFEVITALRFELWMTKQEILEAYLNSVSLHSNIVGFPSASLQL EEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCEECCCCHHHHH FDKHIRFLSVEEAVYLTVLIRKNHSTNEEIRFRYNQLREKIPFLIPYLENPKDLTIDTQK HHHHHHHEEECCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCEEECCC ENKNELNTQFKGENQHFLNWIRVLNPLPDGEFVATISSQLNTEVHSIVNSELEGLKRWNV CCCHHCCCEECCCCHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCC SNASALVLEKNPNHSDELSLVAMIGSKNFFEEGNGMVNGSLAFRDAGSTLKPLLYGYAID CCCEEEEEECCCCCCCCEEEEEEECCCCHHHCCCCEEECEEEEECCCCHHHHHHHHEECC KKIYTVNSILSDEKFSYPIGFVGNYLPRNADLRYWGDITLAEALGNSRNIPAVTTIQRIG CEEEEHHHHHCCCCCCCCHHHHHCCCCCCCCEEEECCEEHHHHCCCCCCCCHHHHHHHHC VPVFYQFLIGAGFLHLKESPSFYGPGLALGTGGASLLQLSRSYGTFMLGGILPKIRLGYL HHHHHHHHHCCCEEEEECCCCCCCCCEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH KEVPFYYGESKRLLSEETAEEIKFILSDAKLRQRAFGRRSYLNFPFPVSIKTGTSKDYRN HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCC SWTVAFNDRYVVAAWVGNFSGEKTMDVSGSFGAGRMVQNIFRILMDDKPKSVYTPKFTEV CEEEEECCCEEEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHH RNFCKLTGKSATIQCPSISLRVRKEMIQSEICDQHSIGGESSVIGARFVYPSNGQVYLYH HHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCHHCCCCCCCEEEEEEEECCCCEEEEEC PSHEKEKQKIPIRIREIKTLKNPKLIWNQTKEIQLSIHGEGSLSIERGKQNLELFDGVIK CCCCCCCCCCCEEEEEHHHCCCCCEEECCCEEEEEEEECCCCEEEECCCCHHHHHHHHHH KASVQFEVK HCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7961491; 9274030; 9384377 [H]