| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is clpC [H]
Identifier: 183221935
GI number: 183221935
Start: 2660602
End: 2663151
Strand: Reverse
Name: clpC [H]
Synonym: LEPBI_I2574
Alternate gene names: 183221935
Gene position: 2663151-2660602 (Counterclockwise)
Preceding gene: 183221936
Following gene: 183221934
Centisome position: 73.98
GC content: 42.31
Gene sequence:
>2550_bases ATGTTGGAATTCACCAAAAGAGCAAAAAGAGTCATCAACGAAATCGCCCAAGATGAGGCTAAACGTTTAGGTTCCGATTT TATCGGTCCTGAACACATTCTACTTGGGCTTCTCCGGGAGGAGGACTCTGTCGCGATTAAGATTCTCACGAATCTAAACA TCAATTTAAACGAACTCCGTAAAGAAGTGGAGAAACGTACCCGCGAGGGTTCGGGTGCTTTGTTACTCGATGTCAGCCAA GGGCAAGACAAGTACCAAAAAATGATCGAAGTTTCCAAAGAAGAGGCAAAACGCCTCAAACATAACTATGTGGGAACCGA GCACATTCTCCTCGCATTACTTCGTGATAATAATAATATAGCGGGAGGATCTTTATCTTCCTTTAGCGTAAATTATAATG TCATCAAATCGGAAATTTTACGTCTGTTAGGCGCACCTCCTTCAGGAGCTGTGGGTGGTTCCACTGGGACCCAGTCCACA GGCCAAAGCCAATCACAAACGGCAGCACCAAGACAAGAAAAAAGTAAAACTCCGATCCTTGATGAATTTGCACGAGACCT CACACAATTGGCACGTGAGAAAAAATTGGACCCAGTCATTGGGCGCTCAAAAGAAATCGAACGTGTGATCCAAATTTTAT CGAGAAAAACCAAAAACAACCCGGTTCTCGTCGGAGAATCAGGTGTTGGGAAAACGGCGATCGTGGAAGGCCTTGCGCAA GCTGTGATCGAAAAATTGGTCCCAGATTTACTTTTCGATAAACGAGTGTTATCTTTAGATTTGGCAAGCCTCATTGCAGG TACCAAATACCGTGGTGAGTTTGAAGAACGATTGAAAAAAATCATGAAAGAAATCGTCACTTCCCAAAACATCATCATCT TCATTGATGAGTTGCACACTCTGATTGGGGCTGGGGCCGCAGAAGGGGCAGTGGATGCCGCAAACATTTTAAAACCGGCA CTCGCACGTGGCGAACTCCAATGCATTGGAGCAACAACGAATAACGAATATCGTAAATACATCGAAAAAGATTCTGCATT GGAACGAAGGTTCCAAATGGTGAAGGTACTCGAACCTTCCGTTGACGATGCGGTTCTTATTTTGGATGGATTGAAAAAAG CATACGAATCCCACCATAAGGTGCGTTATTCGGAAAAAGCCATCGAACAGGCAGTCAAACTTTCACACCGTTATATCAAC GACAGGTTTTTACCAGACAAAGCAATTGATATCATCGATGAAGCAGGAGCCAAAGCAAGACTTGCCAATTGCCAACGACC AAATGAAATCAAAGAGATCGAAGAAGAGATCAAATCGTTATCTCTGAAAAAAGAAGATTTGGTTCGTAGCCAAGAGTATG AAAAAGCGGCCGCTGTTCGCGATGAAGTGAATCGTAAAAAAGGTGAATTGGAAGAAAAAACCAAACAATGGCAAGAGAGA ATGGAAGGGTATGCCGTTTCCATCGAGGAAGAAGACATCCTTTCTGTTGTCAGTCTTTGGACGGGAATTCCATTGAAAAA AATGGAACAATCCGAAAACACAAAACTTCTTAATTTGGAAGAAGACATCAAATCTCGAATTGTTGGGCAAACCGAAGCGA TTGAAAAAGTGGCACGTGCCGTCAGACGCTCTCGCACTGGTCTCAAAAGTGAAAAACGACCTACTGGATCGTTTATTTTC CTTGGACCAACTGGTGTGGGAAAAACGGAACTTGCAAAAGCCCTCGCGGAACAATTGTTCGGTTCGGAAGACAATATGCT TCGTATCGATATGTCGGAATACATGGAGCCACATGCGGTATCAAGACTGATTGGAGCTCCTCCTGGTTATGTAGGGTATG ATGATGGTGGCCAACTCACAGAATTTGTGAGAAGAAAACCATACAGTTTGGTTTTACTTGATGAGATCGAAAAAGCCCAC CATGATTTGTTTAATATCCTTTTGCAAATTATGGAAGAGGGGAATTTAACCGATACGAAAGGTCGTAAGGTCAACTTCCG AGATACCATCATCATCATGACATCCAATATTGCCGCGAAGGAAATATCCAAAGGTGGAAGATTGGGTTTTGAAGATTTTG CAGACGAAAGGGAAGCTTATAAGGCTGAACAGGCAAGAGAACAACTTAAAAAACATTTTAATCCTGAGTTTTTAAACCGT GTGGATGAAGTGGTTTACTTTGCTCCTCTCAAAAAAGAAGAAATCGTTAGCATTGTGGATATCATGTTAAAAGATTTTAA CAAACGTTTGACGGAGAAAAAAGTATTCGTGGAACTCACATTCGCTGCAAAAGAACATTTTGCTACGATTGGATACGACC AAAACTACGGAGCCCGACCACTCCGACGTGTGTTCCAAAGAGAATTGGAAGATTATATGGCGGTTCAGTCTCTCAAAGGT GTTTATGAAAACCCTACTAAAATTTTGGTAGATATGGCAGAAGGAAAACTTGTGTATTCCGAATCAGCTTGGGAAGATTA CAAAGAAGTTCCTAAAAAAGACGATGGATCTTCGCCAAACACTGAGGAAAAAGACTTAGCCCTCGTATAA
Upstream 100 bases:
>100_bases TCAGTTTTACAAAATTCTTGGTTTACGAGGCTCCCTTTGACCCAGTACGGTCAAGATGGGAACAAGGACGTTCGTCTAAT TACTAAAGGCAGGGTGCGGC
Downstream 100 bases:
>100_bases GGGTTTTTAGGAAGGCGAAAGGAAATGGCAATTCTCATTCCCCTCGTCTTCCTATTTTCTTATTTTTTCATCCGTAAAAT ATGGTTCCAACTTCGTAAAA
Product: ATPase ClpC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 849; Mature: 849
Protein sequence:
>849_residues MLEFTKRAKRVINEIAQDEAKRLGSDFIGPEHILLGLLREEDSVAIKILTNLNINLNELRKEVEKRTREGSGALLLDVSQ GQDKYQKMIEVSKEEAKRLKHNYVGTEHILLALLRDNNNIAGGSLSSFSVNYNVIKSEILRLLGAPPSGAVGGSTGTQST GQSQSQTAAPRQEKSKTPILDEFARDLTQLAREKKLDPVIGRSKEIERVIQILSRKTKNNPVLVGESGVGKTAIVEGLAQ AVIEKLVPDLLFDKRVLSLDLASLIAGTKYRGEFEERLKKIMKEIVTSQNIIIFIDELHTLIGAGAAEGAVDAANILKPA LARGELQCIGATTNNEYRKYIEKDSALERRFQMVKVLEPSVDDAVLILDGLKKAYESHHKVRYSEKAIEQAVKLSHRYIN DRFLPDKAIDIIDEAGAKARLANCQRPNEIKEIEEEIKSLSLKKEDLVRSQEYEKAAAVRDEVNRKKGELEEKTKQWQER MEGYAVSIEEEDILSVVSLWTGIPLKKMEQSENTKLLNLEEDIKSRIVGQTEAIEKVARAVRRSRTGLKSEKRPTGSFIF LGPTGVGKTELAKALAEQLFGSEDNMLRIDMSEYMEPHAVSRLIGAPPGYVGYDDGGQLTEFVRRKPYSLVLLDEIEKAH HDLFNILLQIMEEGNLTDTKGRKVNFRDTIIIMTSNIAAKEISKGGRLGFEDFADEREAYKAEQAREQLKKHFNPEFLNR VDEVVYFAPLKKEEIVSIVDIMLKDFNKRLTEKKVFVELTFAAKEHFATIGYDQNYGARPLRRVFQRELEDYMAVQSLKG VYENPTKILVDMAEGKLVYSESAWEDYKEVPKKDDGSSPNTEEKDLALV
Sequences:
>Translated_849_residues MLEFTKRAKRVINEIAQDEAKRLGSDFIGPEHILLGLLREEDSVAIKILTNLNINLNELRKEVEKRTREGSGALLLDVSQ GQDKYQKMIEVSKEEAKRLKHNYVGTEHILLALLRDNNNIAGGSLSSFSVNYNVIKSEILRLLGAPPSGAVGGSTGTQST GQSQSQTAAPRQEKSKTPILDEFARDLTQLAREKKLDPVIGRSKEIERVIQILSRKTKNNPVLVGESGVGKTAIVEGLAQ AVIEKLVPDLLFDKRVLSLDLASLIAGTKYRGEFEERLKKIMKEIVTSQNIIIFIDELHTLIGAGAAEGAVDAANILKPA LARGELQCIGATTNNEYRKYIEKDSALERRFQMVKVLEPSVDDAVLILDGLKKAYESHHKVRYSEKAIEQAVKLSHRYIN DRFLPDKAIDIIDEAGAKARLANCQRPNEIKEIEEEIKSLSLKKEDLVRSQEYEKAAAVRDEVNRKKGELEEKTKQWQER MEGYAVSIEEEDILSVVSLWTGIPLKKMEQSENTKLLNLEEDIKSRIVGQTEAIEKVARAVRRSRTGLKSEKRPTGSFIF LGPTGVGKTELAKALAEQLFGSEDNMLRIDMSEYMEPHAVSRLIGAPPGYVGYDDGGQLTEFVRRKPYSLVLLDEIEKAH HDLFNILLQIMEEGNLTDTKGRKVNFRDTIIIMTSNIAAKEISKGGRLGFEDFADEREAYKAEQAREQLKKHFNPEFLNR VDEVVYFAPLKKEEIVSIVDIMLKDFNKRLTEKKVFVELTFAAKEHFATIGYDQNYGARPLRRVFQRELEDYMAVQSLKG VYENPTKILVDMAEGKLVYSESAWEDYKEVPKKDDGSSPNTEEKDLALV >Mature_849_residues MLEFTKRAKRVINEIAQDEAKRLGSDFIGPEHILLGLLREEDSVAIKILTNLNINLNELRKEVEKRTREGSGALLLDVSQ GQDKYQKMIEVSKEEAKRLKHNYVGTEHILLALLRDNNNIAGGSLSSFSVNYNVIKSEILRLLGAPPSGAVGGSTGTQST GQSQSQTAAPRQEKSKTPILDEFARDLTQLAREKKLDPVIGRSKEIERVIQILSRKTKNNPVLVGESGVGKTAIVEGLAQ AVIEKLVPDLLFDKRVLSLDLASLIAGTKYRGEFEERLKKIMKEIVTSQNIIIFIDELHTLIGAGAAEGAVDAANILKPA LARGELQCIGATTNNEYRKYIEKDSALERRFQMVKVLEPSVDDAVLILDGLKKAYESHHKVRYSEKAIEQAVKLSHRYIN DRFLPDKAIDIIDEAGAKARLANCQRPNEIKEIEEEIKSLSLKKEDLVRSQEYEKAAAVRDEVNRKKGELEEKTKQWQER MEGYAVSIEEEDILSVVSLWTGIPLKKMEQSENTKLLNLEEDIKSRIVGQTEAIEKVARAVRRSRTGLKSEKRPTGSFIF LGPTGVGKTELAKALAEQLFGSEDNMLRIDMSEYMEPHAVSRLIGAPPGYVGYDDGGQLTEFVRRKPYSLVLLDEIEKAH HDLFNILLQIMEEGNLTDTKGRKVNFRDTIIIMTSNIAAKEISKGGRLGFEDFADEREAYKAEQAREQLKKHFNPEFLNR VDEVVYFAPLKKEEIVSIVDIMLKDFNKRLTEKKVFVELTFAAKEHFATIGYDQNYGARPLRRVFQRELEDYMAVQSLKG VYENPTKILVDMAEGKLVYSESAWEDYKEVPKKDDGSSPNTEEKDLALV
Specific function: Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase
COG id: COG0542
COG function: function code O; ATPases with chaperone activity, ATP-binding subunit
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 UVR domain [H]
Homologues:
Organism=Homo sapiens, GI13540606, Length=348, Percent_Identity=34.4827586206897, Blast_Score=199, Evalue=1e-50, Organism=Escherichia coli, GI1788943, Length=857, Percent_Identity=43.4072345390898, Blast_Score=657, Evalue=0.0, Organism=Escherichia coli, GI1787109, Length=814, Percent_Identity=38.8206388206388, Blast_Score=504, Evalue=1e-144, Organism=Saccharomyces cerevisiae, GI6320464, Length=738, Percent_Identity=45.7994579945799, Blast_Score=595, Evalue=1e-171, Organism=Saccharomyces cerevisiae, GI6323002, Length=908, Percent_Identity=35.7929515418502, Blast_Score=504, Evalue=1e-143,
Paralogues:
None
Copy number: 560 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR013093 - InterPro: IPR003959 - InterPro: IPR018368 - InterPro: IPR001270 - InterPro: IPR019489 - InterPro: IPR004176 - InterPro: IPR023150 - InterPro: IPR001943 [H]
Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF02861 Clp_N; PF10431 ClpB_D2-small; PF02151 UVR [H]
EC number: NA
Molecular weight: Translated: 95648; Mature: 95648
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: PS50151 UVR ; PS00870 CLPAB_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEFTKRAKRVINEIAQDEAKRLGSDFIGPEHILLGLLREEDSVAIKILTNLNINLNELR CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHH KEVEKRTREGSGALLLDVSQGQDKYQKMIEVSKEEAKRLKHNYVGTEHILLALLRDNNNI HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC AGGSLSSFSVNYNVIKSEILRLLGAPPSGAVGGSTGTQSTGQSQSQTAAPRQEKSKTPIL CCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHCCCCCHH DEFARDLTQLAREKKLDPVIGRSKEIERVIQILSRKTKNNPVLVGESGVGKTAIVEGLAQ HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH AVIEKLVPDLLFDKRVLSLDLASLIAGTKYRGEFEERLKKIMKEIVTSQNIIIFIDELHT HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHH LIGAGAAEGAVDAANILKPALARGELQCIGATTNNEYRKYIEKDSALERRFQMVKVLEPS HHCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC VDDAVLILDGLKKAYESHHKVRYSEKAIEQAVKLSHRYINDRFLPDKAIDIIDEAGAKAR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHH LANCQRPNEIKEIEEEIKSLSLKKEDLVRSQEYEKAAAVRDEVNRKKGELEEKTKQWQER HHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH MEGYAVSIEEEDILSVVSLWTGIPLKKMEQSENTKLLNLEEDIKSRIVGQTEAIEKVARA HCCEEEEECHHHHHHHHHHHHCCCHHHHHCCCCCEEECHHHHHHHHHCCCHHHHHHHHHH VRRSRTGLKSEKRPTGSFIFLGPTGVGKTELAKALAEQLFGSEDNMLRIDMSEYMEPHAV HHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHHCCHHHH SRLIGAPPGYVGYDDGGQLTEFVRRKPYSLVLLDEIEKAHHDLFNILLQIMEEGNLTDTK HHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCC GRKVNFRDTIIIMTSNIAAKEISKGGRLGFEDFADEREAYKAEQAREQLKKHFNPEFLNR CCEEECCCEEEEEECCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH VDEVVYFAPLKKEEIVSIVDIMLKDFNKRLTEKKVFVELTFAAKEHFATIGYDQNYGARP HHHHHEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHEECCCCCCCCCHH LRRVFQRELEDYMAVQSLKGVYENPTKILVDMAEGKLVYSESAWEDYKEVPKKDDGSSPN HHHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCCEEECCHHHHHHHHCCCCCCCCCCC TEEKDLALV CCCCCCCCC >Mature Secondary Structure MLEFTKRAKRVINEIAQDEAKRLGSDFIGPEHILLGLLREEDSVAIKILTNLNINLNELR CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHH KEVEKRTREGSGALLLDVSQGQDKYQKMIEVSKEEAKRLKHNYVGTEHILLALLRDNNNI HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC AGGSLSSFSVNYNVIKSEILRLLGAPPSGAVGGSTGTQSTGQSQSQTAAPRQEKSKTPIL CCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHCCCCCHH DEFARDLTQLAREKKLDPVIGRSKEIERVIQILSRKTKNNPVLVGESGVGKTAIVEGLAQ HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH AVIEKLVPDLLFDKRVLSLDLASLIAGTKYRGEFEERLKKIMKEIVTSQNIIIFIDELHT HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHH LIGAGAAEGAVDAANILKPALARGELQCIGATTNNEYRKYIEKDSALERRFQMVKVLEPS HHCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC VDDAVLILDGLKKAYESHHKVRYSEKAIEQAVKLSHRYINDRFLPDKAIDIIDEAGAKAR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHH LANCQRPNEIKEIEEEIKSLSLKKEDLVRSQEYEKAAAVRDEVNRKKGELEEKTKQWQER HHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH MEGYAVSIEEEDILSVVSLWTGIPLKKMEQSENTKLLNLEEDIKSRIVGQTEAIEKVARA HCCEEEEECHHHHHHHHHHHHCCCHHHHHCCCCCEEECHHHHHHHHHCCCHHHHHHHHHH VRRSRTGLKSEKRPTGSFIFLGPTGVGKTELAKALAEQLFGSEDNMLRIDMSEYMEPHAV HHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHHCCHHHH SRLIGAPPGYVGYDDGGQLTEFVRRKPYSLVLLDEIEKAHHDLFNILLQIMEEGNLTDTK HHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCC GRKVNFRDTIIIMTSNIAAKEISKGGRLGFEDFADEREAYKAEQAREQLKKHFNPEFLNR CCEEECCCEEEEEECCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH VDEVVYFAPLKKEEIVSIVDIMLKDFNKRLTEKKVFVELTFAAKEHFATIGYDQNYGARP HHHHHEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHEECCCCCCCCCHH LRRVFQRELEDYMAVQSLKGVYENPTKILVDMAEGKLVYSESAWEDYKEVPKKDDGSSPN HHHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCCEEECCHHHHHHHHCCCCCCCCCCC TEEKDLALV CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12235376 [H]