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The map label for this gene is rhaS [C]

Identifier: 183221855

GI number: 183221855

Start: 2572045

End: 2572860

Strand: Reverse

Name: rhaS [C]

Synonym: LEPBI_I2488

Alternate gene names: 183221855

Gene position: 2572860-2572045 (Counterclockwise)

Preceding gene: 183221858

Following gene: 183221854

Centisome position: 71.47

GC content: 33.33

Gene sequence:

>816_bases
TTGACTACAATTCTTATGCACGTAACCAAAAGAAAAATTCCAATCGAACTTAAATATGTGGCAAAAGATTTATACATTTA
TGAATCAAAGAATAGTAAAAAAGAAATTTTGACTTTTTTTGCAGATGGATTCCCAGGGCTTGTATTCTTTCATTCCCATT
CGCAGGTGAAAGTAATCGTAGGCGAACTATCTAAAGTGATGGAACCAGTTTTTTTATATGGGCAAACTCTGGAACCAATT
CAAATTGAAATCGAAGGACCGTTTTTTTTTGTTATGGTTCAATTGTTCCCAAGTTTTGTTGAAGAGACCTTGGAAATTCC
GATTTCGGAGCTCACAAATTCTTGTTGGACCATAAAAAAGGAAGAATGGCAAAGTGAATCTGGATTTGAATCTTCCATTC
AAAAACATTCATCTGAGATGGCAGCAGATGCTATCTTACAATTTGTAAAATCGAAAGCTAAAAAATTTTCTCCTGATTTG
ACTCTGCACAACTGTATTGAAACCATTTTGGAATCAAATGGAAGTTGTGAAATTCAAAACATTGCAAATGAGTTGGGTAT
TTCCGAGAGGACATTACAACGAAAATTCCAAAAGTCTGTAGGATTGACTCCGAAACAATTTGCGACAATCATTCGTTTTC
ATACAAGCTTACATGGATTAAATGAAGATAAAAATATCAAATTGACTGATATAGCATATGAAAATGGTTATTCTGATCAA
TCCCATTTTATCCGACAATTTAAGTCGTTTACCAAAGAAAAACCTTTCCAATTCAGAGAAAAAAAAGGAAACATGTCGGG
TTCGTCCAATTTTTAA

Upstream 100 bases:

>100_bases
AGAATGGACTATTTCAATCATACGTTAAAAAAAAGAAATGAAATTGATCCTGCAATTCGTCTAAGGAAAACTAGTTTTTC
AAAGAAGTAAATTTGTAATT

Downstream 100 bases:

>100_bases
ATATTGATCTTTGTTATTCTTTGGGCATGAAACCATTAAATTTAATTTTAGGATCTAGCGGAAAAACGGGATCGAGAATT
GTAAACAAATTGAACCAACT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator Arac Family; AraC Family Regulatory Protein; Arac/Xyls Family Transcriptional Regulator; Regulatory Protein; Helix-TurN-Helix Arac Domain; Transcription Regulator

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MTTILMHVTKRKIPIELKYVAKDLYIYESKNSKKEILTFFADGFPGLVFFHSHSQVKVIVGELSKVMEPVFLYGQTLEPI
QIEIEGPFFFVMVQLFPSFVEETLEIPISELTNSCWTIKKEEWQSESGFESSIQKHSSEMAADAILQFVKSKAKKFSPDL
TLHNCIETILESNGSCEIQNIANELGISERTLQRKFQKSVGLTPKQFATIIRFHTSLHGLNEDKNIKLTDIAYENGYSDQ
SHFIRQFKSFTKEKPFQFREKKGNMSGSSNF

Sequences:

>Translated_271_residues
MTTILMHVTKRKIPIELKYVAKDLYIYESKNSKKEILTFFADGFPGLVFFHSHSQVKVIVGELSKVMEPVFLYGQTLEPI
QIEIEGPFFFVMVQLFPSFVEETLEIPISELTNSCWTIKKEEWQSESGFESSIQKHSSEMAADAILQFVKSKAKKFSPDL
TLHNCIETILESNGSCEIQNIANELGISERTLQRKFQKSVGLTPKQFATIIRFHTSLHGLNEDKNIKLTDIAYENGYSDQ
SHFIRQFKSFTKEKPFQFREKKGNMSGSSNF
>Mature_270_residues
TTILMHVTKRKIPIELKYVAKDLYIYESKNSKKEILTFFADGFPGLVFFHSHSQVKVIVGELSKVMEPVFLYGQTLEPIQ
IEIEGPFFFVMVQLFPSFVEETLEIPISELTNSCWTIKKEEWQSESGFESSIQKHSSEMAADAILQFVKSKAKKFSPDLT
LHNCIETILESNGSCEIQNIANELGISERTLQRKFQKSVGLTPKQFATIIRFHTSLHGLNEDKNIKLTDIAYENGYSDQS
HFIRQFKSFTKEKPFQFREKKGNMSGSSNF

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31132; Mature: 31001

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTILMHVTKRKIPIELKYVAKDLYIYESKNSKKEILTFFADGFPGLVFFHSHSQVKVIV
CCEEEEEECCCCCCEEEEEEHHEEEEEECCCCHHHHHHHHHCCCCCEEEEECCCCHHHHH
GELSKVMEPVFLYGQTLEPIQIEIEGPFFFVMVQLFPSFVEETLEIPISELTNSCWTIKK
HHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHEECCH
EEWQSESGFESSIQKHSSEMAADAILQFVKSKAKKFSPDLTLHNCIETILESNGSCEIQN
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEHHH
IANELGISERTLQRKFQKSVGLTPKQFATIIRFHTSLHGLNEDKNIKLTDIAYENGYSDQ
HHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHH
SHFIRQFKSFTKEKPFQFREKKGNMSGSSNF
HHHHHHHHHHHHCCCCHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TTILMHVTKRKIPIELKYVAKDLYIYESKNSKKEILTFFADGFPGLVFFHSHSQVKVIV
CEEEEEECCCCCCEEEEEEHHEEEEEECCCCHHHHHHHHHCCCCCEEEEECCCCHHHHH
GELSKVMEPVFLYGQTLEPIQIEIEGPFFFVMVQLFPSFVEETLEIPISELTNSCWTIKK
HHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHEECCH
EEWQSESGFESSIQKHSSEMAADAILQFVKSKAKKFSPDLTLHNCIETILESNGSCEIQN
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEHHH
IANELGISERTLQRKFQKSVGLTPKQFATIIRFHTSLHGLNEDKNIKLTDIAYENGYSDQ
HHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHH
SHFIRQFKSFTKEKPFQFREKKGNMSGSSNF
HHHHHHHHHHHHCCCCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA