| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is ypdA [H]
Identifier: 183221826
GI number: 183221826
Start: 2538911
End: 2541172
Strand: Reverse
Name: ypdA [H]
Synonym: LEPBI_I2457
Alternate gene names: 183221826
Gene position: 2541172-2538911 (Counterclockwise)
Preceding gene: 183221827
Following gene: 183221825
Centisome position: 70.59
GC content: 36.56
Gene sequence:
>2262_bases ATGTGGCCCCAAGTTTATTTTAATTGGTTACGAAACTTCTCTCCAACTGGATCCGTTGAAATTTATCCTGAAATTTCTGA TTCATTTGAAACAAATTTACCGAATGTCTTTGTGATTGGTGATTTAACTGGTGTTCCACTTTTAAAGATGGCCGCAGAAA GTGGAGTTCAAGTTTGGAAACACATTCCAGAAATTTCCAATAATCGATTGGATGCTGTGATCATCGGTTCTGGACCCGCC GGAGTTTCATGTGCGATGGAAGCCAAACGGTTGGGAAAAAAGTACTTAGTATTGGAATCGAATCTTCCCTTCCAAACCAT TCAAAGTTATCCTAAAAAAAAACCAATTTTTGCAGAACCTAAAGAATTCCAAAGTAATTCCTCAATCAAAATTCTTGATA CGGTCAAAGAAGACCTTTTAAAGGATTTGAATCAGATTCTAAAACAAAATCCAATCAATTTGGAAACAAACCAAAGAGTC ATCAGTATTAGAAAAGATCATGCCGGTTATGTTTTAGAGACTGAAACAGGTTCCACTTATCAAACAAATTCTGTTGTCAT TGCGATGGGGAAATCAGGAGATCCTAAAAAATTAGGAATCAAAGGAGAAAACGAATCAAATGTTTCCTACCGTCTCATCG ATCCAAAAGAAACATCTGGTTCATCTGTGATCATAGTCGGTGGAGGGGATACTGCTTTAGAATCTGCGATTCTTTGTTCT GAGTATGCAAAAGAAATTACAATCATTCATAGGGGAGGCGATTTTAGCAAAGCAAAGTCCGAAAACAAAAATCTTGTTTT GACTTTGGAATCAGAAGGGAAAGTAAAAATTATTTTTGAATCGGAATTGCAAGAGATTACACCTTCGTTTGTTTTTGTTA AAACCAAACAATCAGCAATCAAAATCAAAGCTGATTTGATCTATGTAATGATAGGAACCTTACCTCCCATTGGTTTTTTT GAACGTGTTGGCATCAAATTACAAAATCAAAAAAACATTATGGATTGGGTTGGGCTTACAGGGCTTGTTTCATTTGCAAT GACTGCCTATTTTGGGAAGGCATCTTTTTATGGGCCCATCTGGTTTTCGTTTCTTGCTTCCTTCTCTGCTTTTATTTCGG CAGTCAGCTTGATAACCTATGCCATTATTGTATGGAAAAAACGAGAGACTAAGTTTGATCATTGGAAAATTTTTAAGTTC AGTTATTTCCTATTTGTTTTTTTCTATTTTTTAACCGTTTATTTTTCGTCTTCGTACCAAGGGTATCATCTTTTAGGGAA GTATCCTTCGTTTCATTATACTTTTTTGTATTCGCTCACCATCCTCGTTTTTGGAATACGTAGGATGATTGTTCGTAAAA CAGATTATATTTTTTATCAAACGCTTTCTTTGATAGGAATCCAAGTTTTTTTCCTGTTTTTATTGCCGGAATTGATATTA CCGGCATTAGGTGAACTTGGATATCTTGGCAGTCAAGACGGATACATTAGAACAGAAATTTTCCCATCTGATGCTTATTG GAAAGCCTACGGATTTATATTAGCATGGCCATTGAGTATGGGAGTTTTATATGATGGTGGAATCACTAAGTTTTGGTTGG TTTACGGAATTTCGTTTAGTTTTGTTTTTATCCCTTTCCTTGTTTATCGTTATGGTAAGGGAGCCTATTGTGGTTGGATT TGTTCCTGCGGTGGACTTGCGGAGACATTAGGTGATGAATATAGACAAAAAATGCCCCATTCTAAAACTGCCTATCGATT TGAACATTCTGGACAATATATACTCTTTCTTGCTGCGATTCTCACGTTCTTAAAACTGGTTGGTGTTTTTGGGAAGTTTT ACTTCCCGAGTTTTATTTTAGGAGAGATGGTTGCTGATTCAGTCAAATGGATTTATGACATCGTCGTAGACATAGGTCTT GCCGGTGTCGTTGGTGTTGGATGTTATTTTTTTTACTCAGGGCGAGTCTGGTGCCGCATGTTTTGTCCTCTTGCATCACT CATGCATATTTATGCAAGATTCAGTCAATTTAGGATTTTTTCAGATAAAAAGAAATGTATTTCTTGTAATATCTGCACGA AGAACTGTCACCAAGGAATTGATGTAATGGGGTATGCGAGTAGAGGGATTCCTATGGATAGCGTTCAATGTGTACGGTGT TCGGCTTGTGTATCTCTTTGTCCTACTGATGTTCTACAATTTGGAAAATTGAATGGGAATCAGGTGACATTTGATTTGTT AGATGCCAAAATGCGGAAATAA
Upstream 100 bases:
>100_bases GACAAGTTCACCTAATCAAGGTACAAAAATCACAATTCAAATTCCGAACTCACTGTAATTTAGTTTCTTTTTTCCAGTCG ATTTAGTCCAATTGGAAGGT
Downstream 100 bases:
>100_bases TAGTTTGAATTCACTCAAAGAAGAAATTTTGTATTTTTTTAGACTAGGGGTACATGCGGCGGACCCCAATTCCTTGTTTG AAGATTTTTGGGAGGATCAT
Product: putative thioredoxin-disulfide reductase
Products: thioredoxin disulfide; NADPH; H+
Alternate protein names: NA
Number of amino acids: Translated: 753; Mature: 753
Protein sequence:
>753_residues MWPQVYFNWLRNFSPTGSVEIYPEISDSFETNLPNVFVIGDLTGVPLLKMAAESGVQVWKHIPEISNNRLDAVIIGSGPA GVSCAMEAKRLGKKYLVLESNLPFQTIQSYPKKKPIFAEPKEFQSNSSIKILDTVKEDLLKDLNQILKQNPINLETNQRV ISIRKDHAGYVLETETGSTYQTNSVVIAMGKSGDPKKLGIKGENESNVSYRLIDPKETSGSSVIIVGGGDTALESAILCS EYAKEITIIHRGGDFSKAKSENKNLVLTLESEGKVKIIFESELQEITPSFVFVKTKQSAIKIKADLIYVMIGTLPPIGFF ERVGIKLQNQKNIMDWVGLTGLVSFAMTAYFGKASFYGPIWFSFLASFSAFISAVSLITYAIIVWKKRETKFDHWKIFKF SYFLFVFFYFLTVYFSSSYQGYHLLGKYPSFHYTFLYSLTILVFGIRRMIVRKTDYIFYQTLSLIGIQVFFLFLLPELIL PALGELGYLGSQDGYIRTEIFPSDAYWKAYGFILAWPLSMGVLYDGGITKFWLVYGISFSFVFIPFLVYRYGKGAYCGWI CSCGGLAETLGDEYRQKMPHSKTAYRFEHSGQYILFLAAILTFLKLVGVFGKFYFPSFILGEMVADSVKWIYDIVVDIGL AGVVGVGCYFFYSGRVWCRMFCPLASLMHIYARFSQFRIFSDKKKCISCNICTKNCHQGIDVMGYASRGIPMDSVQCVRC SACVSLCPTDVLQFGKLNGNQVTFDLLDAKMRK
Sequences:
>Translated_753_residues MWPQVYFNWLRNFSPTGSVEIYPEISDSFETNLPNVFVIGDLTGVPLLKMAAESGVQVWKHIPEISNNRLDAVIIGSGPA GVSCAMEAKRLGKKYLVLESNLPFQTIQSYPKKKPIFAEPKEFQSNSSIKILDTVKEDLLKDLNQILKQNPINLETNQRV ISIRKDHAGYVLETETGSTYQTNSVVIAMGKSGDPKKLGIKGENESNVSYRLIDPKETSGSSVIIVGGGDTALESAILCS EYAKEITIIHRGGDFSKAKSENKNLVLTLESEGKVKIIFESELQEITPSFVFVKTKQSAIKIKADLIYVMIGTLPPIGFF ERVGIKLQNQKNIMDWVGLTGLVSFAMTAYFGKASFYGPIWFSFLASFSAFISAVSLITYAIIVWKKRETKFDHWKIFKF SYFLFVFFYFLTVYFSSSYQGYHLLGKYPSFHYTFLYSLTILVFGIRRMIVRKTDYIFYQTLSLIGIQVFFLFLLPELIL PALGELGYLGSQDGYIRTEIFPSDAYWKAYGFILAWPLSMGVLYDGGITKFWLVYGISFSFVFIPFLVYRYGKGAYCGWI CSCGGLAETLGDEYRQKMPHSKTAYRFEHSGQYILFLAAILTFLKLVGVFGKFYFPSFILGEMVADSVKWIYDIVVDIGL AGVVGVGCYFFYSGRVWCRMFCPLASLMHIYARFSQFRIFSDKKKCISCNICTKNCHQGIDVMGYASRGIPMDSVQCVRC SACVSLCPTDVLQFGKLNGNQVTFDLLDAKMRK >Mature_753_residues MWPQVYFNWLRNFSPTGSVEIYPEISDSFETNLPNVFVIGDLTGVPLLKMAAESGVQVWKHIPEISNNRLDAVIIGSGPA GVSCAMEAKRLGKKYLVLESNLPFQTIQSYPKKKPIFAEPKEFQSNSSIKILDTVKEDLLKDLNQILKQNPINLETNQRV ISIRKDHAGYVLETETGSTYQTNSVVIAMGKSGDPKKLGIKGENESNVSYRLIDPKETSGSSVIIVGGGDTALESAILCS EYAKEITIIHRGGDFSKAKSENKNLVLTLESEGKVKIIFESELQEITPSFVFVKTKQSAIKIKADLIYVMIGTLPPIGFF ERVGIKLQNQKNIMDWVGLTGLVSFAMTAYFGKASFYGPIWFSFLASFSAFISAVSLITYAIIVWKKRETKFDHWKIFKF SYFLFVFFYFLTVYFSSSYQGYHLLGKYPSFHYTFLYSLTILVFGIRRMIVRKTDYIFYQTLSLIGIQVFFLFLLPELIL PALGELGYLGSQDGYIRTEIFPSDAYWKAYGFILAWPLSMGVLYDGGITKFWLVYGISFSFVFIPFLVYRYGKGAYCGWI CSCGGLAETLGDEYRQKMPHSKTAYRFEHSGQYILFLAAILTFLKLVGVFGKFYFPSFILGEMVADSVKWIYDIVVDIGL AGVVGVGCYFFYSGRVWCRMFCPLASLMHIYARFSQFRIFSDKKKCISCNICTKNCHQGIDVMGYASRGIPMDSVQCVRC SACVSLCPTDVLQFGKLNGNQVTFDLLDAKMRK
Specific function: Unknown
COG id: COG0492
COG function: function code O; Thioredoxin reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787226, Length=216, Percent_Identity=27.7777777777778, Blast_Score=73, Evalue=7e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013027 - InterPro: IPR001327 - InterPro: IPR000103 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]
EC number: 1.8.1.9
Molecular weight: Translated: 85014; Mature: 85014
Theoretical pI: Translated: 8.89; Mature: 8.89
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWPQVYFNWLRNFSPTGSVEIYPEISDSFETNLPNVFVIGDLTGVPLLKMAAESGVQVWK CCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH HIPEISNNRLDAVIIGSGPAGVSCAMEAKRLGKKYLVLESNLPFQTIQSYPKKKPIFAEP HCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCCCCCCCC KEFQSNSSIKILDTVKEDLLKDLNQILKQNPINLETNQRVISIRKDHAGYVLETETGSTY HHHCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEECCCCCEE QTNSVVIAMGKSGDPKKLGIKGENESNVSYRLIDPKETSGSSVIIVGGGDTALESAILCS ECCEEEEEECCCCCCCEECCCCCCCCCCEEEEECCCCCCCCEEEEECCCHHHHHHHHHHH EYAKEITIIHRGGDFSKAKSENKNLVLTLESEGKVKIIFESELQEITPSFVFVKTKQSAI HHHCEEEEEECCCCCCHHCCCCCCEEEEEECCCCEEEEEECHHHHCCCCEEEEEECCCEE KIKADLIYVMIGTLPPIGFFERVGIKLQNQKNIMDWVGLTGLVSFAMTAYFGKASFYGPI EEEHHEEEEEECCCCCCCHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH WFSFLASFSAFISAVSLITYAIIVWKKRETKFDHWKIFKFSYFLFVFFYFLTVYFSSSYQ HHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCC GYHLLGKYPSFHYTFLYSLTILVFGIRRMIVRKTDYIFYQTLSLIGIQVFFLFLLPELIL CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PALGELGYLGSQDGYIRTEIFPSDAYWKAYGFILAWPLSMGVLYDGGITKFWLVYGISFS HHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHEEEHHHCCEEECCCCHHHHHHHHHHHH FVFIPFLVYRYGKGAYCGWICSCGGLAETLGDEYRQKMPHSKTAYRFEHSGQYILFLAAI HHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHH LTFLKLVGVFGKFYFPSFILGEMVADSVKWIYDIVVDIGLAGVVGVGCYFFYSGRVWCRM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH FCPLASLMHIYARFSQFRIFSDKKKCISCNICTKNCHQGIDVMGYASRGIPMDSVQCVRC HHHHHHHHHHHHHHHHHEEECCCCCEEEEEEEHHHHCCCCCEEEECCCCCCCCCHHHHHH SACVSLCPTDVLQFGKLNGNQVTFDLLDAKMRK HHHHHHCCHHHHHHCCCCCCEEEEEEHHHHHCC >Mature Secondary Structure MWPQVYFNWLRNFSPTGSVEIYPEISDSFETNLPNVFVIGDLTGVPLLKMAAESGVQVWK CCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH HIPEISNNRLDAVIIGSGPAGVSCAMEAKRLGKKYLVLESNLPFQTIQSYPKKKPIFAEP HCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCCCCCCCC KEFQSNSSIKILDTVKEDLLKDLNQILKQNPINLETNQRVISIRKDHAGYVLETETGSTY HHHCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEECCCCCEE QTNSVVIAMGKSGDPKKLGIKGENESNVSYRLIDPKETSGSSVIIVGGGDTALESAILCS ECCEEEEEECCCCCCCEECCCCCCCCCCEEEEECCCCCCCCEEEEECCCHHHHHHHHHHH EYAKEITIIHRGGDFSKAKSENKNLVLTLESEGKVKIIFESELQEITPSFVFVKTKQSAI HHHCEEEEEECCCCCCHHCCCCCCEEEEEECCCCEEEEEECHHHHCCCCEEEEEECCCEE KIKADLIYVMIGTLPPIGFFERVGIKLQNQKNIMDWVGLTGLVSFAMTAYFGKASFYGPI EEEHHEEEEEECCCCCCCHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH WFSFLASFSAFISAVSLITYAIIVWKKRETKFDHWKIFKFSYFLFVFFYFLTVYFSSSYQ HHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCC GYHLLGKYPSFHYTFLYSLTILVFGIRRMIVRKTDYIFYQTLSLIGIQVFFLFLLPELIL CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PALGELGYLGSQDGYIRTEIFPSDAYWKAYGFILAWPLSMGVLYDGGITKFWLVYGISFS HHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHEEEHHHCCEEECCCCHHHHHHHHHHHH FVFIPFLVYRYGKGAYCGWICSCGGLAETLGDEYRQKMPHSKTAYRFEHSGQYILFLAAI HHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHH LTFLKLVGVFGKFYFPSFILGEMVADSVKWIYDIVVDIGLAGVVGVGCYFFYSGRVWCRM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH FCPLASLMHIYARFSQFRIFSDKKKCISCNICTKNCHQGIDVMGYASRGIPMDSVQCVRC HHHHHHHHHHHHHHHHHEEECCCCCEEEEEEEHHHHCCCCCEEEECCCCCCCCCHHHHHH SACVSLCPTDVLQFGKLNGNQVTFDLLDAKMRK HHHHHHCCHHHHHHCCCCCCEEEEEEHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: thioredoxin; NADP+
Specific reaction: thioredoxin + NADP+ = thioredoxin disulfide + NADPH + H+
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377 [H]