| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is dpo2 [H]
Identifier: 183221542
GI number: 183221542
Start: 2249020
End: 2251683
Strand: Direct
Name: dpo2 [H]
Synonym: LEPBI_I2161
Alternate gene names: 183221542
Gene position: 2249020-2251683 (Clockwise)
Preceding gene: 183221541
Following gene: 183221543
Centisome position: 62.48
GC content: 35.4
Gene sequence:
>2664_bases ATGGAAACATACAAAGGTTATCTGTTTGATATCTACCATTCAGAACAAAAAATTTACCTTTGGATCAAATCAGACACTGG TGAATTAAAACTTTTTGTCGATGAATACTTTCCCATCATTTATGCGAATGCGTCACCCTCTATCTTAAAGAAGTTAGTTA AACGATTTTACGAATTAGATGCATTAGCCGAAATACCCAGTTTCACAGAAAAACGACTGTTCTACCAAAACAAAACCATA CCAGTTTTAAAACTTGTCATCTCAAAACCACAATTACTTCCAAGAATTACAAACAAACTTTTCAACTTATATGGCAAGTA TGACATATACCATTCGGATATCGAAATCACAACAGGATACATGGTTGAAAAAAATATCTACCCACTTGCTTATCTAACAA TTGAATATGAAATTCCCCCAAACAAAATAAATCGCATCAAATCCGTCACATCTTTAACCGACATAAACGAGTTAGACTAC AACATCCCTGAACTACGAGCCATTTCCCTCTACTTAGAAAAAAGCCACAGGCACCCCTTTCAAGAGAATACATTAATCGT CGAAACTCCCAAAGAAAAATATAATATACCCACAAAAAATGGAATCACACTCATCGAAAAACTAAACCTTATATTACAAA AACATAATCCTGATATCATTTTATCTTCATTTGGTGACCAAGTCATCTTTCCCTATCTCTTTAAAACAGCCCAAGAATGT CACCTAACAACCGAATTCGATAGAGACAAAACAAGTTTGATCCGACGTTCCATCCAAACCCAAGGCACCAGTTTTAACAC CTATGGTACCATCGTATTCCGAGCACCGTCCTATCCTTTATTTGGAAGATGGCATATCGATTCCCGGAATAGTTTTGTAT ACAAAGAAGCAGAACTCATCGGAATCATTGAACTCTCGCGTATCTCCAGATTACCAATCCAAAAAATGGCAAGGGCATCC ACAGGAAAAGCACTCACCTACATCGAAGTAGATGTAGCCCTTCGCATGAACTATCTTGTTCCTTGGCAAAAAAGCGCGCT CGAATCAGAAAAATCCGCCTTACAATTATTAAATGCAGATAAGGGCGGACTCGTTTTCCAAGCCGATATCCAAAATGGAT TTGTATTAGAAAACGTGGCACAGCTCGATTTCTCTCAAATGTATCCAAACATTATGGTCAAACACAACATCAGTCCAGAA ACGATCAATTGTCTATGTTGCGAAGATGACCCAAATGTAGAAAAAGTTCCCTCCCTAGGTTACCGAATTTGCGCAAAACG AAAAGGGATTGTCTCTGAAGCATTGGCACATATCGTCCAAAGAAGGAATCATTACAAAGAACAAAAAAGAAATAACCATC CAAATCTATTAAACATCCAATCAAAACAATCTAGCTTAAAATGGATGTTGGTTACGTCATTTGGTTATTTAGGTTATAGA AATGCAAAATTCGGAAAACTGGAAAGTCATGAAGCAGTTACAGCTTTTGGTAGAGAAAAACTTATCAATGCAAAAGAAGT ATCAGAAGAATTCCAATACAAAGTTGTACATGGAATTACCGATAGTATTTTTATCCAAAAAAAGGACACAACACCGATCA CCAACGAAGACCTAACATTCCTTTGTTTAGAAATTGAAAAACGCACCAAAATCAAAATGGAAATAGAAGGAATTTATTCT TGGTTATGTTTTCCACCTTCCACCCAAGATGAAAAACTCCCCGTTGCTAACCGATACATGGGACGTTTCATCGATGGGCA GTTCAAGGGTAGAGGGATCATCACAAGAAGAAAAGATTTTCCAAACTTTATAAAAGATGCGCAAAACAAAATGATCCAAT GGATGTGCCAATTTAAATCCATTTCGGAAATGCAAAAAAAAGAATCCGAAATTTTGAACCTATTCTTTTATTATGATCAA AAACTAACAACGGGGAATCTCAACTGGAAAGACCTTGTCATCCAAAAATCGACCTCAAAAGAACCAGAAGACTATACCGT AGATGCGCCAAGTACAATCGCTGTCAAAGACCTACTTGCGATGGGTGTCCATGTGCAAGCTGGTGAAAAAATAAAATACA TCGTCATCAATCAAAAATCCGATAAAAAAGGAGAAAGATACCTCACACTCGAACGAATGGAGCAAAAAGAAAATCCAAAG AAACAAATAGATGATAAAAACGTCCCATCAAATCCTTCCCTATACCAAAACAGTTCACCAAAATATAAGAAAATTGAAAA AAGAATTGAAACATTAGAACAAAATTCAATCCAAAATGTAACAGAAAACTCAAAAATCAATTCAAAAATCAACCAACGAA CAATTGCTAAATACCAAATCCACGAACCACCGAACCAATTCCATATCCAAGAAAATATAGAAAACGAAGCGCATAGTATC ACAAATAAAATAAACAAACCGAACGATTTTACATCAGAATGTAGCAATAGTCCGTTCAAATTTACCAACCAAACACCAAA ATACGATCAACACTACTATAGATCACTACTAGTAAAGTCTTTTAAAGAAATATGGGTCGGAATCTCTAGTTTCAAAAACT TTGAAATACTAATCAGCAATGAAACATTTTTACCCTTTGCTTTTGAAAAAAGCCAAAACTACTCAAAAAACATCAATAAA ACTAATTCCATTTTTATTGCATAA
Upstream 100 bases:
>100_bases AAAAGAATTGAACGAATTATCTGAATTAAAAAAGAAACTCTCCAAAGAATTAAATCTTTCGTGAAACAAAAATTTGGAAC CAATATAACATCAGATCAAA
Downstream 100 bases:
>100_bases GATGTAAAAAAAAACTAAAAAAATGAAATAACTAACCCCCTCTCCGTTACGAAAAAACACCACCAAACAAAAAAATATTT GAACTCAGGATCTTCGAATC
Product: putative DNA polymerase
Products: NA
Alternate protein names: DNA polymerase B2; DNA polymerase II [H]
Number of amino acids: Translated: 887; Mature: 887
Protein sequence:
>887_residues METYKGYLFDIYHSEQKIYLWIKSDTGELKLFVDEYFPIIYANASPSILKKLVKRFYELDALAEIPSFTEKRLFYQNKTI PVLKLVISKPQLLPRITNKLFNLYGKYDIYHSDIEITTGYMVEKNIYPLAYLTIEYEIPPNKINRIKSVTSLTDINELDY NIPELRAISLYLEKSHRHPFQENTLIVETPKEKYNIPTKNGITLIEKLNLILQKHNPDIILSSFGDQVIFPYLFKTAQEC HLTTEFDRDKTSLIRRSIQTQGTSFNTYGTIVFRAPSYPLFGRWHIDSRNSFVYKEAELIGIIELSRISRLPIQKMARAS TGKALTYIEVDVALRMNYLVPWQKSALESEKSALQLLNADKGGLVFQADIQNGFVLENVAQLDFSQMYPNIMVKHNISPE TINCLCCEDDPNVEKVPSLGYRICAKRKGIVSEALAHIVQRRNHYKEQKRNNHPNLLNIQSKQSSLKWMLVTSFGYLGYR NAKFGKLESHEAVTAFGREKLINAKEVSEEFQYKVVHGITDSIFIQKKDTTPITNEDLTFLCLEIEKRTKIKMEIEGIYS WLCFPPSTQDEKLPVANRYMGRFIDGQFKGRGIITRRKDFPNFIKDAQNKMIQWMCQFKSISEMQKKESEILNLFFYYDQ KLTTGNLNWKDLVIQKSTSKEPEDYTVDAPSTIAVKDLLAMGVHVQAGEKIKYIVINQKSDKKGERYLTLERMEQKENPK KQIDDKNVPSNPSLYQNSSPKYKKIEKRIETLEQNSIQNVTENSKINSKINQRTIAKYQIHEPPNQFHIQENIENEAHSI TNKINKPNDFTSECSNSPFKFTNQTPKYDQHYYRSLLVKSFKEIWVGISSFKNFEILISNETFLPFAFEKSQNYSKNINK TNSIFIA
Sequences:
>Translated_887_residues METYKGYLFDIYHSEQKIYLWIKSDTGELKLFVDEYFPIIYANASPSILKKLVKRFYELDALAEIPSFTEKRLFYQNKTI PVLKLVISKPQLLPRITNKLFNLYGKYDIYHSDIEITTGYMVEKNIYPLAYLTIEYEIPPNKINRIKSVTSLTDINELDY NIPELRAISLYLEKSHRHPFQENTLIVETPKEKYNIPTKNGITLIEKLNLILQKHNPDIILSSFGDQVIFPYLFKTAQEC HLTTEFDRDKTSLIRRSIQTQGTSFNTYGTIVFRAPSYPLFGRWHIDSRNSFVYKEAELIGIIELSRISRLPIQKMARAS TGKALTYIEVDVALRMNYLVPWQKSALESEKSALQLLNADKGGLVFQADIQNGFVLENVAQLDFSQMYPNIMVKHNISPE TINCLCCEDDPNVEKVPSLGYRICAKRKGIVSEALAHIVQRRNHYKEQKRNNHPNLLNIQSKQSSLKWMLVTSFGYLGYR NAKFGKLESHEAVTAFGREKLINAKEVSEEFQYKVVHGITDSIFIQKKDTTPITNEDLTFLCLEIEKRTKIKMEIEGIYS WLCFPPSTQDEKLPVANRYMGRFIDGQFKGRGIITRRKDFPNFIKDAQNKMIQWMCQFKSISEMQKKESEILNLFFYYDQ KLTTGNLNWKDLVIQKSTSKEPEDYTVDAPSTIAVKDLLAMGVHVQAGEKIKYIVINQKSDKKGERYLTLERMEQKENPK KQIDDKNVPSNPSLYQNSSPKYKKIEKRIETLEQNSIQNVTENSKINSKINQRTIAKYQIHEPPNQFHIQENIENEAHSI TNKINKPNDFTSECSNSPFKFTNQTPKYDQHYYRSLLVKSFKEIWVGISSFKNFEILISNETFLPFAFEKSQNYSKNINK TNSIFIA >Mature_887_residues METYKGYLFDIYHSEQKIYLWIKSDTGELKLFVDEYFPIIYANASPSILKKLVKRFYELDALAEIPSFTEKRLFYQNKTI PVLKLVISKPQLLPRITNKLFNLYGKYDIYHSDIEITTGYMVEKNIYPLAYLTIEYEIPPNKINRIKSVTSLTDINELDY NIPELRAISLYLEKSHRHPFQENTLIVETPKEKYNIPTKNGITLIEKLNLILQKHNPDIILSSFGDQVIFPYLFKTAQEC HLTTEFDRDKTSLIRRSIQTQGTSFNTYGTIVFRAPSYPLFGRWHIDSRNSFVYKEAELIGIIELSRISRLPIQKMARAS TGKALTYIEVDVALRMNYLVPWQKSALESEKSALQLLNADKGGLVFQADIQNGFVLENVAQLDFSQMYPNIMVKHNISPE TINCLCCEDDPNVEKVPSLGYRICAKRKGIVSEALAHIVQRRNHYKEQKRNNHPNLLNIQSKQSSLKWMLVTSFGYLGYR NAKFGKLESHEAVTAFGREKLINAKEVSEEFQYKVVHGITDSIFIQKKDTTPITNEDLTFLCLEIEKRTKIKMEIEGIYS WLCFPPSTQDEKLPVANRYMGRFIDGQFKGRGIITRRKDFPNFIKDAQNKMIQWMCQFKSISEMQKKESEILNLFFYYDQ KLTTGNLNWKDLVIQKSTSKEPEDYTVDAPSTIAVKDLLAMGVHVQAGEKIKYIVINQKSDKKGERYLTLERMEQKENPK KQIDDKNVPSNPSLYQNSSPKYKKIEKRIETLEQNSIQNVTENSKINSKINQRTIAKYQIHEPPNQFHIQENIENEAHSI TNKINKPNDFTSECSNSPFKFTNQTPKYDQHYYRSLLVKSFKEIWVGISSFKNFEILISNETFLPFAFEKSQNYSKNINK TNSIFIA
Specific function: This polymerase is devoid of exonuclease activity [H]
COG id: COG0417
COG function: function code L; DNA polymerase elongation subunit (family B)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA polymerase type-B family [H]
Homologues:
Organism=Homo sapiens, GI106507301, Length=381, Percent_Identity=26.246719160105, Blast_Score=86, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17559488, Length=214, Percent_Identity=28.5046728971963, Blast_Score=66, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6324227, Length=347, Percent_Identity=24.207492795389, Blast_Score=72, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006172 - InterPro: IPR006134 - InterPro: IPR023211 [H]
Pfam domain/function: PF00136 DNA_pol_B [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 103232; Mature: 103232
Theoretical pI: Translated: 9.33; Mature: 9.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METYKGYLFDIYHSEQKIYLWIKSDTGELKLFVDEYFPIIYANASPSILKKLVKRFYELD CCCCCCEEEEEEECCCEEEEEEECCCCCEEEEEECCCEEEECCCCHHHHHHHHHHHHHHH ALAEIPSFTEKRLFYQNKTIPVLKLVISKPQLLPRITNKLFNLYGKYDIYHSDIEITTGY HHHHCCCHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCEEEEECE MVEKNIYPLAYLTIEYEIPPNKINRIKSVTSLTDINELDYNIPELRAISLYLEKSHRHPF EEECCCCEEEEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCCCCEEEEEEEEHHCCCCC QENTLIVETPKEKYNIPTKNGITLIEKLNLILQKHNPDIILSSFGDQVIFPYLFKTAQEC CCCEEEEECCHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHC HLTTEFDRDKTSLIRRSIQTQGTSFNTYGTIVFRAPSYPLFGRWHIDSRNSFVYKEAELI EEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCEEEEEECCCCCEEEECCCEE GIIELSRISRLPIQKMARASTGKALTYIEVDVALRMNYLVPWQKSALESEKSALQLLNAD EEEEHHHHHCCCHHHHHHCCCCCEEEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHCCC KGGLVFQADIQNGFVLENVAQLDFSQMYPNIMVKHNISPETINCLCCEDDPNVEKVPSLG CCCEEEEEECCCCEEEHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCHHHHCCCH YRICAKRKGIVSEALAHIVQRRNHYKEQKRNNHPNLLNIQSKQSSLKWMLVTSFGYLGYR HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEECCCCCCC NAKFGKLESHEAVTAFGREKLINAKEVSEEFQYKVVHGITDSIFIQKKDTTPITNEDLTF CCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHEECCCCEEEEEECCCCCCCCCCCEE LCLEIEKRTKIKMEIEGIYSWLCFPPSTQDEKLPVANRYMGRFIDGQFKGRGIITRRKDF EEEEECCCCEEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCC PNFIKDAQNKMIQWMCQFKSISEMQKKESEILNLFFYYDQKLTTGNLNWKDLVIQKSTSK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCEEEECCCCHHEEEEECCCCC EPEDYTVDAPSTIAVKDLLAMGVHVQAGEKIKYIVINQKSDKKGERYLTLERMEQKENPK CCCCEECCCCCHHHHHHHHHHCCEEECCCEEEEEEEECCCCCCCCEEEEHHHHHHCCCCH KQIDDKNVPSNPSLYQNSSPKYKKIEKRIETLEQNSIQNVTENSKINSKINQRTIAKYQI HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEEEEEE HEPPNQFHIQENIENEAHSITNKINKPNDFTSECSNSPFKFTNQTPKYDQHYYRSLLVKS CCCCCCEEEHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCEECCCCCCHHHHHHHHHHHHH FKEIWVGISSFKNFEILISNETFLPFAFEKSQNYSKNINKTNSIFIA HHHHHHHHCCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCEEEC >Mature Secondary Structure METYKGYLFDIYHSEQKIYLWIKSDTGELKLFVDEYFPIIYANASPSILKKLVKRFYELD CCCCCCEEEEEEECCCEEEEEEECCCCCEEEEEECCCEEEECCCCHHHHHHHHHHHHHHH ALAEIPSFTEKRLFYQNKTIPVLKLVISKPQLLPRITNKLFNLYGKYDIYHSDIEITTGY HHHHCCCHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCEEEEECE MVEKNIYPLAYLTIEYEIPPNKINRIKSVTSLTDINELDYNIPELRAISLYLEKSHRHPF EEECCCCEEEEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCCCCEEEEEEEEHHCCCCC QENTLIVETPKEKYNIPTKNGITLIEKLNLILQKHNPDIILSSFGDQVIFPYLFKTAQEC CCCEEEEECCHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHC HLTTEFDRDKTSLIRRSIQTQGTSFNTYGTIVFRAPSYPLFGRWHIDSRNSFVYKEAELI EEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCEEEEEECCCCCEEEECCCEE GIIELSRISRLPIQKMARASTGKALTYIEVDVALRMNYLVPWQKSALESEKSALQLLNAD EEEEHHHHHCCCHHHHHHCCCCCEEEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHCCC KGGLVFQADIQNGFVLENVAQLDFSQMYPNIMVKHNISPETINCLCCEDDPNVEKVPSLG CCCEEEEEECCCCEEEHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCHHHHCCCH YRICAKRKGIVSEALAHIVQRRNHYKEQKRNNHPNLLNIQSKQSSLKWMLVTSFGYLGYR HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEECCCCCCC NAKFGKLESHEAVTAFGREKLINAKEVSEEFQYKVVHGITDSIFIQKKDTTPITNEDLTF CCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHEECCCCEEEEEECCCCCCCCCCCEE LCLEIEKRTKIKMEIEGIYSWLCFPPSTQDEKLPVANRYMGRFIDGQFKGRGIITRRKDF EEEEECCCCEEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCC PNFIKDAQNKMIQWMCQFKSISEMQKKESEILNLFFYYDQKLTTGNLNWKDLVIQKSTSK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCEEEECCCCHHEEEEECCCCC EPEDYTVDAPSTIAVKDLLAMGVHVQAGEKIKYIVINQKSDKKGERYLTLERMEQKENPK CCCCEECCCCCHHHHHHHHHHCCEEECCCEEEEEEEECCCCCCCCEEEEHHHHHHCCCCH KQIDDKNVPSNPSLYQNSSPKYKKIEKRIETLEQNSIQNVTENSKINSKINQRTIAKYQI HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEEEEEE HEPPNQFHIQENIENEAHSITNKINKPNDFTSECSNSPFKFTNQTPKYDQHYYRSLLVKS CCCCCCEEEHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCEECCCCCCHHHHHHHHHHHHH FKEIWVGISSFKNFEILISNETFLPFAFEKSQNYSKNINKTNSIFIA HHHHHHHHCCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8332474; 11427726 [H]