Click here to switch to the map view.

The map label for this gene is clpS

Identifier: 183221238

GI number: 183221238

Start: 1943670

End: 1944011

Strand: Reverse

Name: clpS

Synonym: LEPBI_I1853

Alternate gene names: 183221238

Gene position: 1944011-1943670 (Counterclockwise)

Preceding gene: 183221239

Following gene: 183221237

Centisome position: 54.01

GC content: 35.96

Gene sequence:

>342_bases
ATGTCTGAATCCAATCGAAAATCATATACAGATTTTAATGTTGAGCTTTTAGAAAAAGAAAAACAAAAGAAAAAATTAAA
AAAACCAGATCGTTATAAGGTGATTTTAATTAACGATGACTATACACCACAAGAATTTGTTGTCTATGTTTTAGCAGTTG
TATTTCGGAAATCAATGGATGAGTCTCGTCAAATCATGTGGAGAGCACATACGGAAGGATCTGCTGTATGTGGAGTGTAT
TCACTCGATATTGCACGCACAAAAGTAGCTGAAGTGCATAAATTAGCAGATGATGCGGGACACCCTTTACAATGCCAGTT
GGCAAAGGAGGAAGAGGAATGA

Upstream 100 bases:

>100_bases
GTGCCATAGAAGCCTATTTGGAAAAAGAGATTCAAATGGAGAGAGAAAACATTGCTTCTTACAACGCACATTCGCCCATT
AAATCACTGAGGGAAACGTG

Downstream 100 bases:

>100_bases
ACTTTTCGACCGATTTAGAAAAAACATTGGAATTGGCACATATTGAGGCCAGCAAATACCATCATGAGTTTATCACATTA
GAACATTTGTTATATGGGTT

Product: ATP-dependent Clp protease adaptor protein Clp

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MSESNRKSYTDFNVELLEKEKQKKKLKKPDRYKVILINDDYTPQEFVVYVLAVVFRKSMDESRQIMWRAHTEGSAVCGVY
SLDIARTKVAEVHKLADDAGHPLQCQLAKEEEE

Sequences:

>Translated_113_residues
MSESNRKSYTDFNVELLEKEKQKKKLKKPDRYKVILINDDYTPQEFVVYVLAVVFRKSMDESRQIMWRAHTEGSAVCGVY
SLDIARTKVAEVHKLADDAGHPLQCQLAKEEEE
>Mature_112_residues
SESNRKSYTDFNVELLEKEKQKKKLKKPDRYKVILINDDYTPQEFVVYVLAVVFRKSMDESRQIMWRAHTEGSAVCGVYS
LDIARTKVAEVHKLADDAGHPLQCQLAKEEEE

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=109, Percent_Identity=44.954128440367, Blast_Score=95, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS_LEPBA (B0S9H9)

Other databases:

- EMBL:   CP000777
- RefSeq:   YP_001962884.1
- ProteinModelPortal:   B0S9H9
- SMR:   B0S9H9
- GeneID:   6389031
- GenomeReviews:   CP000777_GR
- KEGG:   lbf:LBF_1799
- HOGENOM:   HBG644923
- OMA:   FVIHILE
- ProtClustDB:   CLSK574210
- BioCyc:   LBIF355278:LBF_1799-MONOMER
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 13136; Mature: 13005

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESNRKSYTDFNVELLEKEKQKKKLKKPDRYKVILINDDYTPQEFVVYVLAVVFRKSMD
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC
ESRQIMWRAHTEGSAVCGVYSLDIARTKVAEVHKLADDAGHPLQCQLAKEEEE
HHHHEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
>Mature Secondary Structure 
SESNRKSYTDFNVELLEKEKQKKKLKKPDRYKVILINDDYTPQEFVVYVLAVVFRKSMD
CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC
ESRQIMWRAHTEGSAVCGVYSLDIARTKVAEVHKLADDAGHPLQCQLAKEEEE
HHHHEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA