| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is clpA [H]
Identifier: 183221237
GI number: 183221237
Start: 1941403
End: 1943673
Strand: Reverse
Name: clpA [H]
Synonym: LEPBI_I1852
Alternate gene names: 183221237
Gene position: 1943673-1941403 (Counterclockwise)
Preceding gene: 183221238
Following gene: 183221234
Centisome position: 54.0
GC content: 40.51
Gene sequence:
>2271_bases ATGAACTTTTCGACCGATTTAGAAAAAACATTGGAATTGGCACATATTGAGGCCAGCAAATACCATCATGAGTTTATCAC ATTAGAACATTTGTTATATGGGTTAACGTTTAACGAAAAAACAAAGGAAGTGCTGGTTAACGTTGGATGTGATTTGGATT TACTTCGCAAAGAATTATTAGAATACTTTGAAGATGACTTATCCTCCATCGCGGTTCCCAATTTAAAAATCCAACCGAAG TACACTGTAGGTGTACAATTTGTAATTCAGTTTGCAGCCTTTCATGTTCAAAACTCAGGCAAAGAAGAGGTGGATGGAAA TAATGTACTTGTCGCATTATTTCGAGAAGAGGATAGCCAGGCCTGTTATTTACTCGCCAAACAAGATATCAAACGGCTTG ATGTGATCAAATTTATTTCACATGGAGTGAAAAAAGAATCGAGCCCGATAGACCCTAATTTTTCTCCATCGGAAGAAGAG TTAGAGGAAGAAGCGGAAGGGAAATCAAAACAATCTGCATTGGAAAAGTTTTGTGTGAATCTTACCGAAAGGGCAAAACT TGGGAAACTAGATCCATGTATCGGAAGGGATACGGAAATCCAAAGGACAATTCACATCCTTTCCAGGCGTAGAAAAAACA ATCCAATATTTGTAGGAGAAGCTGGTGTTGGCAAAACCTCTATTGTAGAGGGGATCGCCTTGCGGGTAGTCAATGGAAAA GTTCCCAAAAGTTTACTTGGACTAGAAATTTACTCACTCGATATGGGACTAGTGATGGCAGGAACCAAATTTAGAGGAGA ATTTGAGGAAAGACTCAAGGCCATCTTGCAAGAATTAGTTGGCAAACCCGAAAAAGTGATTTTTATTGATGAAATTCATA CCATCGTAGGTGCAGGTGCCGTTTCTGGAGGGAGTTTAGACGCCTCTAACCTAATGAAACCAGCACTTGCCAATGGAGAA CTCAAATGCATTGGAACCACAACTTACAAAGAATACAAATCAATCTTTGAAAAAGACCATGCACTTTCCAGAAGGTTTCA AAAAATTGAAGTTTCGGAACCATCCAGGGAAGACGCCATACAGATATTAAATGGATTAAAGCCCAAATACGAATCATTTC ATGGTGTCCATTATAGCATTAAAGCAATCGAAGCATGCGTTGATTTATCCACTTTGCATCTAAGGGATCGTTTTTTACCA GACAAAGCCATCGACTTACTAGATGAAGCGGGTGCCTTTGTCAAACTCCGGGATGAAAACAAAGAAAAAGCCAAAAAGAC GGTGGGGATTTTTGAAATCGAAAGTCTAGTGGCAAAGATTGCGAAGATTCCAGAGAAAACAGTTAAGGCAGATGATAAAA AGAAATTAGAATCTCTTGATTTAGAAATCAAAACCGTTGTCTTCGGCCAGGACCATGCCATCGAACAAATCGTCGATGCC ATCCATTACTCTCGGTCGGGCCTTGGGGACGAAGGGAAACCGATTGGTAGTTTTTTATTTGTAGGACCTACTGGAGTTGG GAAAACGGAAGTGGCCAAAACGTTAGCCGAGAAAATGGGAGTTGAGTTCCTACGATTTGACATGAGTGAGTATATGGAAA AACATTCTGTATCCCGGCTCATTGGTAGCCCTCCAGGTTATGTGGGGTATGACCAAGGTGGCCAACTCACAGATGCGATT GCCAAAACCCCTCACTGTGTATTACTTTTTGACGAAATTGAAAAGGCCCATGAGGATATTTATAACATCCTTTTACAAGT GATGGATCATGCCACTCTGACCGATAGCACTGGAAAAAAAGCGGATTTTCGAAATGTCATTCTAATTCTCACCACAAACA CAGGTGCCCAGGAAAGTGCAAAACCAATGCTTGGTTTTGATACGGATCGATATGATGACAGATCAATGAAAGCGATTGAA CGAACTTTCACACCTGAATTTCGTAACCGTCTAACGGCTGTCATTGAATTTAATCCACTTTCGATTCCCATTGTAGAACT AGTCGTAAAACGAATGTTTAAAACATTACAGTCCAAGGCCAAAGACAAAGGAATTCAGTTGGAGATTTCCGAAAGGTGCG TCCGTTACCTCGCAGAAAATGGCTATGATAAAGCGATGGGGGCAAGGCCCATCCAAAGGATCTTAAATACCGAAATAGGA AAACCTTTGTCCAAAAAGATATTATTCCATAAGGACAAAGTGACCTCATACTTAGTGGACGTAGTGGTAGAGCAGGGCAA ATCCAAATTAGACATCATTCCGGTGATGTAA
Upstream 100 bases:
>100_bases ATTCACTCGATATTGCACGCACAAAAGTAGCTGAAGTGCATAAATTAGCAGATGATGCGGGACACCCTTTACAATGCCAG TTGGCAAAGGAGGAAGAGGA
Downstream 100 bases:
>100_bases AAATAAGAAAGTGTTTTGGAAATTTTGGAACAATCCACAAGTTAGTGGCGGAATTCAAAAGGATTTTGAAAACACTTCGT CTTCTTTTTTAAAGCTCAAG
Product: ATP-dependent Clp protease ATP-binding subunit ClpA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 756; Mature: 756
Protein sequence:
>756_residues MNFSTDLEKTLELAHIEASKYHHEFITLEHLLYGLTFNEKTKEVLVNVGCDLDLLRKELLEYFEDDLSSIAVPNLKIQPK YTVGVQFVIQFAAFHVQNSGKEEVDGNNVLVALFREEDSQACYLLAKQDIKRLDVIKFISHGVKKESSPIDPNFSPSEEE LEEEAEGKSKQSALEKFCVNLTERAKLGKLDPCIGRDTEIQRTIHILSRRRKNNPIFVGEAGVGKTSIVEGIALRVVNGK VPKSLLGLEIYSLDMGLVMAGTKFRGEFEERLKAILQELVGKPEKVIFIDEIHTIVGAGAVSGGSLDASNLMKPALANGE LKCIGTTTYKEYKSIFEKDHALSRRFQKIEVSEPSREDAIQILNGLKPKYESFHGVHYSIKAIEACVDLSTLHLRDRFLP DKAIDLLDEAGAFVKLRDENKEKAKKTVGIFEIESLVAKIAKIPEKTVKADDKKKLESLDLEIKTVVFGQDHAIEQIVDA IHYSRSGLGDEGKPIGSFLFVGPTGVGKTEVAKTLAEKMGVEFLRFDMSEYMEKHSVSRLIGSPPGYVGYDQGGQLTDAI AKTPHCVLLFDEIEKAHEDIYNILLQVMDHATLTDSTGKKADFRNVILILTTNTGAQESAKPMLGFDTDRYDDRSMKAIE RTFTPEFRNRLTAVIEFNPLSIPIVELVVKRMFKTLQSKAKDKGIQLEISERCVRYLAENGYDKAMGARPIQRILNTEIG KPLSKKILFHKDKVTSYLVDVVVEQGKSKLDIIPVM
Sequences:
>Translated_756_residues MNFSTDLEKTLELAHIEASKYHHEFITLEHLLYGLTFNEKTKEVLVNVGCDLDLLRKELLEYFEDDLSSIAVPNLKIQPK YTVGVQFVIQFAAFHVQNSGKEEVDGNNVLVALFREEDSQACYLLAKQDIKRLDVIKFISHGVKKESSPIDPNFSPSEEE LEEEAEGKSKQSALEKFCVNLTERAKLGKLDPCIGRDTEIQRTIHILSRRRKNNPIFVGEAGVGKTSIVEGIALRVVNGK VPKSLLGLEIYSLDMGLVMAGTKFRGEFEERLKAILQELVGKPEKVIFIDEIHTIVGAGAVSGGSLDASNLMKPALANGE LKCIGTTTYKEYKSIFEKDHALSRRFQKIEVSEPSREDAIQILNGLKPKYESFHGVHYSIKAIEACVDLSTLHLRDRFLP DKAIDLLDEAGAFVKLRDENKEKAKKTVGIFEIESLVAKIAKIPEKTVKADDKKKLESLDLEIKTVVFGQDHAIEQIVDA IHYSRSGLGDEGKPIGSFLFVGPTGVGKTEVAKTLAEKMGVEFLRFDMSEYMEKHSVSRLIGSPPGYVGYDQGGQLTDAI AKTPHCVLLFDEIEKAHEDIYNILLQVMDHATLTDSTGKKADFRNVILILTTNTGAQESAKPMLGFDTDRYDDRSMKAIE RTFTPEFRNRLTAVIEFNPLSIPIVELVVKRMFKTLQSKAKDKGIQLEISERCVRYLAENGYDKAMGARPIQRILNTEIG KPLSKKILFHKDKVTSYLVDVVVEQGKSKLDIIPVM >Mature_756_residues MNFSTDLEKTLELAHIEASKYHHEFITLEHLLYGLTFNEKTKEVLVNVGCDLDLLRKELLEYFEDDLSSIAVPNLKIQPK YTVGVQFVIQFAAFHVQNSGKEEVDGNNVLVALFREEDSQACYLLAKQDIKRLDVIKFISHGVKKESSPIDPNFSPSEEE LEEEAEGKSKQSALEKFCVNLTERAKLGKLDPCIGRDTEIQRTIHILSRRRKNNPIFVGEAGVGKTSIVEGIALRVVNGK VPKSLLGLEIYSLDMGLVMAGTKFRGEFEERLKAILQELVGKPEKVIFIDEIHTIVGAGAVSGGSLDASNLMKPALANGE LKCIGTTTYKEYKSIFEKDHALSRRFQKIEVSEPSREDAIQILNGLKPKYESFHGVHYSIKAIEACVDLSTLHLRDRFLP DKAIDLLDEAGAFVKLRDENKEKAKKTVGIFEIESLVAKIAKIPEKTVKADDKKKLESLDLEIKTVVFGQDHAIEQIVDA IHYSRSGLGDEGKPIGSFLFVGPTGVGKTEVAKTLAEKMGVEFLRFDMSEYMEKHSVSRLIGSPPGYVGYDQGGQLTDAI AKTPHCVLLFDEIEKAHEDIYNILLQVMDHATLTDSTGKKADFRNVILILTTNTGAQESAKPMLGFDTDRYDDRSMKAIE RTFTPEFRNRLTAVIEFNPLSIPIVELVVKRMFKTLQSKAKDKGIQLEISERCVRYLAENGYDKAMGARPIQRILNTEIG KPLSKKILFHKDKVTSYLVDVVVEQGKSKLDIIPVM
Specific function: ATP-dependent specificity component of the ClpP protease. It directs the protease to specific substrates. The primary function of the ClpA-ClpP complex appears to be the degradation of unfolded or abnormal proteins [H]
COG id: COG0542
COG function: function code O; ATPases with chaperone activity, ATP-binding subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the clpA/clpB family [H]
Homologues:
Organism=Homo sapiens, GI13540606, Length=170, Percent_Identity=44.1176470588235, Blast_Score=152, Evalue=1e-36, Organism=Escherichia coli, GI1787109, Length=729, Percent_Identity=51.5775034293553, Blast_Score=783, Evalue=0.0, Organism=Escherichia coli, GI1788943, Length=256, Percent_Identity=55.078125, Blast_Score=290, Evalue=2e-79, Organism=Saccharomyces cerevisiae, GI6320464, Length=326, Percent_Identity=47.8527607361963, Blast_Score=272, Evalue=1e-73, Organism=Saccharomyces cerevisiae, GI6323002, Length=348, Percent_Identity=41.0919540229885, Blast_Score=245, Evalue=2e-65,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR013093 - InterPro: IPR003959 - InterPro: IPR018368 - InterPro: IPR001270 - InterPro: IPR019489 - InterPro: IPR004176 - InterPro: IPR013461 - InterPro: IPR023150 [H]
Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF02861 Clp_N; PF10431 ClpB_D2-small [H]
EC number: NA
Molecular weight: Translated: 84610; Mature: 84610
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: PS00870 CLPAB_1 ; PS00871 CLPAB_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNFSTDLEKTLELAHIEASKYHHEFITLEHLLYGLTFNEKTKEVLVNVGCDLDLLRKELL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHH EYFEDDLSSIAVPNLKIQPKYTVGVQFVIQFAAFHVQNSGKEEVDGNNVLVALFREEDSQ HHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCC ACYLLAKQDIKRLDVIKFISHGVKKESSPIDPNFSPSEEELEEEAEGKSKQSALEKFCVN CEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH LTERAKLGKLDPCIGRDTEIQRTIHILSRRRKNNPIFVGEAGVGKTSIVEGIALRVVNGK HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHEEEECCC VPKSLLGLEIYSLDMGLVMAGTKFRGEFEERLKAILQELVGKPEKVIFIDEIHTIVGAGA CCHHHHCCEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCC VSGGSLDASNLMKPALANGELKCIGTTTYKEYKSIFEKDHALSRRFQKIEVSEPSREDAI CCCCCCCHHHHHCHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH QILNGLKPKYESFHGVHYSIKAIEACVDLSTLHLRDRFLPDKAIDLLDEAGAFVKLRDEN HHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCC KEKAKKTVGIFEIESLVAKIAKIPEKTVKADDKKKLESLDLEIKTVVFGQDHAIEQIVDA HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHCCCEEEEEEECCCHHHHHHHHH IHYSRSGLGDEGKPIGSFLFVGPTGVGKTEVAKTLAEKMGVEFLRFDMSEYMEKHSVSRL HHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH IGSPPGYVGYDQGGQLTDAIAKTPHCVLLFDEIEKAHEDIYNILLQVMDHATLTDSTGKK HCCCCCCCCCCCCCCHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC ADFRNVILILTTNTGAQESAKPMLGFDTDRYDDRSMKAIERTFTPEFRNRLTAVIEFNPL CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHCCEEEEEEECCC SIPIVELVVKRMFKTLQSKAKDKGIQLEISERCVRYLAENGYDKAMGARPIQRILNTEIG CCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHC KPLSKKILFHKDKVTSYLVDVVVEQGKSKLDIIPVM CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCC >Mature Secondary Structure MNFSTDLEKTLELAHIEASKYHHEFITLEHLLYGLTFNEKTKEVLVNVGCDLDLLRKELL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHH EYFEDDLSSIAVPNLKIQPKYTVGVQFVIQFAAFHVQNSGKEEVDGNNVLVALFREEDSQ HHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCC ACYLLAKQDIKRLDVIKFISHGVKKESSPIDPNFSPSEEELEEEAEGKSKQSALEKFCVN CEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH LTERAKLGKLDPCIGRDTEIQRTIHILSRRRKNNPIFVGEAGVGKTSIVEGIALRVVNGK HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHEEEECCC VPKSLLGLEIYSLDMGLVMAGTKFRGEFEERLKAILQELVGKPEKVIFIDEIHTIVGAGA CCHHHHCCEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCC VSGGSLDASNLMKPALANGELKCIGTTTYKEYKSIFEKDHALSRRFQKIEVSEPSREDAI CCCCCCCHHHHHCHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH QILNGLKPKYESFHGVHYSIKAIEACVDLSTLHLRDRFLPDKAIDLLDEAGAFVKLRDEN HHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCC KEKAKKTVGIFEIESLVAKIAKIPEKTVKADDKKKLESLDLEIKTVVFGQDHAIEQIVDA HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHCCCEEEEEEECCCHHHHHHHHH IHYSRSGLGDEGKPIGSFLFVGPTGVGKTEVAKTLAEKMGVEFLRFDMSEYMEKHSVSRL HHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH IGSPPGYVGYDQGGQLTDAIAKTPHCVLLFDEIEKAHEDIYNILLQVMDHATLTDSTGKK HCCCCCCCCCCCCCCHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC ADFRNVILILTTNTGAQESAKPMLGFDTDRYDDRSMKAIERTFTPEFRNRLTAVIEFNPL CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHCCEEEEEEECCC SIPIVELVVKRMFKTLQSKAKDKGIQLEISERCVRYLAENGYDKAMGARPIQRILNTEIG CCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHC KPLSKKILFHKDKVTSYLVDVVVEQGKSKLDIIPVM CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]