| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is ntrY [H]
Identifier: 183221040
GI number: 183221040
Start: 1727727
End: 1729550
Strand: Direct
Name: ntrY [H]
Synonym: LEPBI_I1653
Alternate gene names: 183221040
Gene position: 1727727-1729550 (Clockwise)
Preceding gene: 183221039
Following gene: 183221041
Centisome position: 48.0
GC content: 35.09
Gene sequence:
>1824_bases ATGCCAAATAAATTCCTTCGATTTTTCCCAAACATCTCTGATGAAAATCGTTATTATTTAAGAGATATCTTTATCTTTTT TTTGACTCTTGCTATCTCCATTGGGTTTTCAGAACTAGTATTCTTTCGGGAAGAAGAAGACATTTCGTTATATTCAAAAT TAGATACTTATGTTTTTATTCTCATTCCATTTTTTATCTTATCCTTAATTCTAAGTTATGTTTATCGAAACCGTAGAAAT CGAGAAACTGGGAAAATTAGAAGTTCTATTCGATACCGACTAACGCTTGCATTTTTATTCGTGGCACTTGTACCTTCCTT ACCAATTTTCATTTTGTCCTCTAACTTGACAGGAAGGCTCATTGAAGGATTCTATCAAGTTGACATTTCGAATGCATTAC GTTCTGCCAATTTTTTTGTGAATCAAATTGAAAAAGAAAAGGAAGTTTCCTTTTTGGAAATGATCTCGCGTTTTCGTTCT ATTTTGCTTCGCGAAAAACCTGATAGTTTTTCCATTTTTCAAAAGGGTATTAAAAACGGATTTTTTGAAAAAAATGAATT TTATTTAGGATATATTGAAAAAGAAAAAGTTCAATTTGAATCAAAGGGTTTGTACCGGCATTTTCATTCCTTGGAATTTG ACGAATCCAAAGAAAAAGGTATTTATCTAAGTCGATACTATGATGCCGATAAGGCATATTTAGTTGCTAAGTTTAGTTTG GATGGTAATGCAAAAGTTTTGATTGCCCAAAGGATCCATAGGGGAATGGAATCCGATGTATTGAATATCGTCAATGCAAC ATCCACTTATGAGAAAGTGAGTTTATGGAAGGAAAAAATTCCCTTTAGTGTTCGTATCACTATTGCTAGTTTTTCGTTTA GTATGTTTCTCATTGCCATTCTGTTCTCATTCCTATTTGCCAGGCGAATTTCTAAACCTATCATCAATTTGGCGAACGCA ACCAAAAAGGTATCTCTTGGAGAATCTGATATCCGTTTGGAAAAAACGGAAGAAGGAGAAATGGGAATTTTGATTGATAG TTTCAATCAAATGGTGAGTGACTTAAAAGCAAAATCTGATGAACTGATGCACACGCAAAGAATTGCTGCTTGGAAAGAAG TGGCACAACGAATGGCACATGAAATCAAAAATCCACTGACTCCCATTCAATTATCTGCTCAAAGGATACAAAGGAAATTT CAGAATCCAAAAAAAGAAAATTTGGAATCTGTGATTTTTGACGCAACGGAAACGATCATTGGGCAAGTGCGTGTTCTGGA ACATTTGGTAAAGGAATTTAGTGAATTTGCTCGAATGCCGGTACCTGTTCTCATCAACCAACATATCAATCCCATTCTAG AAGAAGCGGTTGCACTCTTTCGAGATACATCTGACATAGAATTTGAATTGAAACTTGCCGAAGATCTTCCTGAAGTATTT CTCGATAAACGATTGTTCCTTGGTGTTGTGAATAATCTCATTAAAAATGCGGTAGAAGCCATTTTATCGCAGGAAAATTC GAAAGAAGAAATGGATTTTCTTGGTTCGAGAAGAAAAAAAATCCGAGTGATGTCGAAATTACAAAAAAAAGCCCTACGTA GGAGTATTGTTCTTGAGATCGACGATTCAGGCCCTGGTTTAAAAGAGGAATGGCGGGAAAAAATTTTTGAACCCTATTTT TCAACAAAAGAGAAACATGGATCAGGGATTGGGCTTGCAATTGTCCAAAAAACGATCATTGACCATCATGGGCATATTTC CGTTGAGAACTCAAAGTTAGGTGGCTGTAAGTTTCGTATTGAACTTCCTTTGGATCTTTCATAA
Upstream 100 bases:
>100_bases CTCGGTCCGGGTACAGTGTTTTCCGTGAAAGCAGAGGGAAAAATGGAAGAGGAGGCACTACAAGCGTTAGAAACTCTCGT GGTTCAGAATTTTGAAACCA
Downstream 100 bases:
>100_bases TGCAAAAATTAATCTATATTTTAGACGATGAAAAAGAAATCCGAAAAACGTTACGAGTGATTTTGGAAGATGAGGAATAT TCTGTCGAAGATTTTTCGAG
Product: histidine kinase sensor protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 607; Mature: 606
Protein sequence:
>607_residues MPNKFLRFFPNISDENRYYLRDIFIFFLTLAISIGFSELVFFREEEDISLYSKLDTYVFILIPFFILSLILSYVYRNRRN RETGKIRSSIRYRLTLAFLFVALVPSLPIFILSSNLTGRLIEGFYQVDISNALRSANFFVNQIEKEKEVSFLEMISRFRS ILLREKPDSFSIFQKGIKNGFFEKNEFYLGYIEKEKVQFESKGLYRHFHSLEFDESKEKGIYLSRYYDADKAYLVAKFSL DGNAKVLIAQRIHRGMESDVLNIVNATSTYEKVSLWKEKIPFSVRITIASFSFSMFLIAILFSFLFARRISKPIINLANA TKKVSLGESDIRLEKTEEGEMGILIDSFNQMVSDLKAKSDELMHTQRIAAWKEVAQRMAHEIKNPLTPIQLSAQRIQRKF QNPKKENLESVIFDATETIIGQVRVLEHLVKEFSEFARMPVPVLINQHINPILEEAVALFRDTSDIEFELKLAEDLPEVF LDKRLFLGVVNNLIKNAVEAILSQENSKEEMDFLGSRRKKIRVMSKLQKKALRRSIVLEIDDSGPGLKEEWREKIFEPYF STKEKHGSGIGLAIVQKTIIDHHGHISVENSKLGGCKFRIELPLDLS
Sequences:
>Translated_607_residues MPNKFLRFFPNISDENRYYLRDIFIFFLTLAISIGFSELVFFREEEDISLYSKLDTYVFILIPFFILSLILSYVYRNRRN RETGKIRSSIRYRLTLAFLFVALVPSLPIFILSSNLTGRLIEGFYQVDISNALRSANFFVNQIEKEKEVSFLEMISRFRS ILLREKPDSFSIFQKGIKNGFFEKNEFYLGYIEKEKVQFESKGLYRHFHSLEFDESKEKGIYLSRYYDADKAYLVAKFSL DGNAKVLIAQRIHRGMESDVLNIVNATSTYEKVSLWKEKIPFSVRITIASFSFSMFLIAILFSFLFARRISKPIINLANA TKKVSLGESDIRLEKTEEGEMGILIDSFNQMVSDLKAKSDELMHTQRIAAWKEVAQRMAHEIKNPLTPIQLSAQRIQRKF QNPKKENLESVIFDATETIIGQVRVLEHLVKEFSEFARMPVPVLINQHINPILEEAVALFRDTSDIEFELKLAEDLPEVF LDKRLFLGVVNNLIKNAVEAILSQENSKEEMDFLGSRRKKIRVMSKLQKKALRRSIVLEIDDSGPGLKEEWREKIFEPYF STKEKHGSGIGLAIVQKTIIDHHGHISVENSKLGGCKFRIELPLDLS >Mature_606_residues PNKFLRFFPNISDENRYYLRDIFIFFLTLAISIGFSELVFFREEEDISLYSKLDTYVFILIPFFILSLILSYVYRNRRNR ETGKIRSSIRYRLTLAFLFVALVPSLPIFILSSNLTGRLIEGFYQVDISNALRSANFFVNQIEKEKEVSFLEMISRFRSI LLREKPDSFSIFQKGIKNGFFEKNEFYLGYIEKEKVQFESKGLYRHFHSLEFDESKEKGIYLSRYYDADKAYLVAKFSLD GNAKVLIAQRIHRGMESDVLNIVNATSTYEKVSLWKEKIPFSVRITIASFSFSMFLIAILFSFLFARRISKPIINLANAT KKVSLGESDIRLEKTEEGEMGILIDSFNQMVSDLKAKSDELMHTQRIAAWKEVAQRMAHEIKNPLTPIQLSAQRIQRKFQ NPKKENLESVIFDATETIIGQVRVLEHLVKEFSEFARMPVPVLINQHINPILEEAVALFRDTSDIEFELKLAEDLPEVFL DKRLFLGVVNNLIKNAVEAILSQENSKEEMDFLGSRRKKIRVMSKLQKKALRRSIVLEIDDSGPGLKEEWREKIFEPYFS TKEKHGSGIGLAIVQKTIIDHHGHISVENSKLGGCKFRIELPLDLS
Specific function: Member of the two-component regulatory system ntrY/ntrX involved in nitrogen level control. Probably activates ntrX by phosphorylation [H]
COG id: COG5000
COG function: function code T; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=290, Percent_Identity=26.551724137931, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1788393, Length=309, Percent_Identity=26.8608414239482, Blast_Score=88, Evalue=2e-18, Organism=Escherichia coli, GI1790346, Length=309, Percent_Identity=27.5080906148867, Blast_Score=84, Evalue=4e-17, Organism=Escherichia coli, GI1787894, Length=318, Percent_Identity=25.1572327044025, Blast_Score=79, Evalue=9e-16, Organism=Escherichia coli, GI1790300, Length=267, Percent_Identity=25.0936329588015, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1790436, Length=251, Percent_Identity=26.6932270916335, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1789149, Length=356, Percent_Identity=24.1573033707865, Blast_Score=73, Evalue=6e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR017232 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 70454; Mature: 70322
Theoretical pI: Translated: 9.45; Mature: 9.45
Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNKFLRFFPNISDENRYYLRDIFIFFLTLAISIGFSELVFFREEEDISLYSKLDTYVFI CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHEEECCCCHHHHHHHHHHHHH LIPFFILSLILSYVYRNRRNRETGKIRSSIRYRLTLAFLFVALVPSLPIFILSSNLTGRL HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH IEGFYQVDISNALRSANFFVNQIEKEKEVSFLEMISRFRSILLREKPDSFSIFQKGIKNG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC FFEKNEFYLGYIEKEKVQFESKGLYRHFHSLEFDESKEKGIYLSRYYDADKAYLVAKFSL CCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCEEEEEEEEC DGNAKVLIAQRIHRGMESDVLNIVNATSTYEKVSLWKEKIPFSVRITIASFSFSMFLIAI CCCCEEEEHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEEEEEHHHHHHHHHHH LFSFLFARRISKPIINLANATKKVSLGESDIRLEKTEEGEMGILIDSFNQMVSDLKAKSD HHHHHHHHHHHHHHHHHHCCHHEEECCCCCCEEEECCCCCEEEEHHHHHHHHHHHHHHHH ELMHTQRIAAWKEVAQRMAHEIKNPLTPIQLSAQRIQRKFQNPKKENLESVIFDATETII HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH GQVRVLEHLVKEFSEFARMPVPVLINQHINPILEEAVALFRDTSDIEFELKLAEDLPEVF HHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHH LDKRLFLGVVNNLIKNAVEAILSQENSKEEMDFLGSRRKKIRVMSKLQKKALRRSIVLEI HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE DDSGPGLKEEWREKIFEPYFSTKEKHGSGIGLAIVQKTIIDHHGHISVENSKLGGCKFRI CCCCCCHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCEEEEE ELPLDLS ECCCCCC >Mature Secondary Structure PNKFLRFFPNISDENRYYLRDIFIFFLTLAISIGFSELVFFREEEDISLYSKLDTYVFI CCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHEEECCCCHHHHHHHHHHHHH LIPFFILSLILSYVYRNRRNRETGKIRSSIRYRLTLAFLFVALVPSLPIFILSSNLTGRL HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH IEGFYQVDISNALRSANFFVNQIEKEKEVSFLEMISRFRSILLREKPDSFSIFQKGIKNG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC FFEKNEFYLGYIEKEKVQFESKGLYRHFHSLEFDESKEKGIYLSRYYDADKAYLVAKFSL CCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCEEEEEEEEC DGNAKVLIAQRIHRGMESDVLNIVNATSTYEKVSLWKEKIPFSVRITIASFSFSMFLIAI CCCCEEEEHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEEEEEHHHHHHHHHHH LFSFLFARRISKPIINLANATKKVSLGESDIRLEKTEEGEMGILIDSFNQMVSDLKAKSD HHHHHHHHHHHHHHHHHHCCHHEEECCCCCCEEEECCCCCEEEEHHHHHHHHHHHHHHHH ELMHTQRIAAWKEVAQRMAHEIKNPLTPIQLSAQRIQRKFQNPKKENLESVIFDATETII HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH GQVRVLEHLVKEFSEFARMPVPVLINQHINPILEEAVALFRDTSDIEFELKLAEDLPEVF HHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHH LDKRLFLGVVNNLIKNAVEAILSQENSKEEMDFLGSRRKKIRVMSKLQKKALRRSIVLEI HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE DDSGPGLKEEWREKIFEPYFSTKEKHGSGIGLAIVQKTIIDHHGHISVENSKLGGCKFRI CCCCCCHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCEEEEE ELPLDLS ECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1661370 [H]