Click here to switch to the map view.

The map label for this gene is yibD [C]

Identifier: 183221006

GI number: 183221006

Start: 1693155

End: 1693976

Strand: Direct

Name: yibD [C]

Synonym: LEPBI_I1619

Alternate gene names: 183221006

Gene position: 1693155-1693976 (Clockwise)

Preceding gene: 183221002

Following gene: 183221007

Centisome position: 47.04

GC content: 39.17

Gene sequence:

>822_bases
ATGGAAGGCAAGAGAAAAAGAAAATTGTCGGTGGCCATCATTACCTTCAATGAAGAAAAAAATATTGGGGATTGTATCCG
ATCGGTTGTATCCTTCGCCGATGAAATCATTGTATTGGATTCGTTGAGTACGGACAAAACCAAGGAAATTGCCACTTCCT
TCCCCAAAGTCCGATTCTTGGAAGCACCCTTCCCGGGCCATGTCGAACAAAAAAACAAAGCCATTTCCTTTTGCCAAAAT
GAATGGATCTTTTCCCTTGATGCCGACGAAAGGGCCGACGAGGTATTACAAAATTCCATCCAAACATTTTTGGAAACCGA
TGAGGTCCATTGTGATGGATATAAAATCGCAAGGCTCACATTTCACTTAGGTCGGTGGATTCGTTATAGTGGATGGTACC
CACAGCGACGTTATCGATTGTTCAAAAAGGCGAATGCCAGTTGGATTGGAGAGAACCCACATGACTTCATTGAACTAAAA
CCAGGATCTTTTGGTAAAGTGATGAAGGGAAATATTTTACATTATAGTTTTACAGATTTCAGTCACCAAATCACGACGAT
CAATCAATTTTCAAGCATTGTCGCCTACACTCGTTATGCGAAGGGTGAAAGGTTTTCATTGATGAAAACCATCATAAAAC
CACTCGGAAAGTTTTTTGAAATTTATCTTTTTAAATTTGGGTTTTTAGATGGAATCCCTGGACTGTGGATTGCCCTTGCT
TCCTCTTTTTCGACTTATTTAAAATACGCGAAATTGTATGAATTGGACCAATTGAAAATTCAACGTCCTTCCAATATACG
AAAAGACTATGGCAAAAAATAA

Upstream 100 bases:

>100_bases
TAGGGGATAGGGCAAAAAAGAATGCCAGAAAAACAAAAGAAATCTTATGAAATGTTTCTTTCCCAATCATATTTGGTTCC
AAGAATAGGTTTTAACTCCT

Downstream 100 bases:

>100_bases
TCCCAAAACCAAACAAGGTTTTTGGAGGAAACTCCTTTCCTTCCTGTCCATTCGATCAAACCAAAAGGTATTGGATTCGG
AAAAAAAGAAAAAAGAACCA

Product: putative glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MEGKRKRKLSVAIITFNEEKNIGDCIRSVVSFADEIIVLDSLSTDKTKEIATSFPKVRFLEAPFPGHVEQKNKAISFCQN
EWIFSLDADERADEVLQNSIQTFLETDEVHCDGYKIARLTFHLGRWIRYSGWYPQRRYRLFKKANASWIGENPHDFIELK
PGSFGKVMKGNILHYSFTDFSHQITTINQFSSIVAYTRYAKGERFSLMKTIIKPLGKFFEIYLFKFGFLDGIPGLWIALA
SSFSTYLKYAKLYELDQLKIQRPSNIRKDYGKK

Sequences:

>Translated_273_residues
MEGKRKRKLSVAIITFNEEKNIGDCIRSVVSFADEIIVLDSLSTDKTKEIATSFPKVRFLEAPFPGHVEQKNKAISFCQN
EWIFSLDADERADEVLQNSIQTFLETDEVHCDGYKIARLTFHLGRWIRYSGWYPQRRYRLFKKANASWIGENPHDFIELK
PGSFGKVMKGNILHYSFTDFSHQITTINQFSSIVAYTRYAKGERFSLMKTIIKPLGKFFEIYLFKFGFLDGIPGLWIALA
SSFSTYLKYAKLYELDQLKIQRPSNIRKDYGKK
>Mature_273_residues
MEGKRKRKLSVAIITFNEEKNIGDCIRSVVSFADEIIVLDSLSTDKTKEIATSFPKVRFLEAPFPGHVEQKNKAISFCQN
EWIFSLDADERADEVLQNSIQTFLETDEVHCDGYKIARLTFHLGRWIRYSGWYPQRRYRLFKKANASWIGENPHDFIELK
PGSFGKVMKGNILHYSFTDFSHQITTINQFSSIVAYTRYAKGERFSLMKTIIKPLGKFFEIYLFKFGFLDGIPGLWIALA
SSFSTYLKYAKLYELDQLKIQRPSNIRKDYGKK

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family. WaaE/kdtX subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 31753; Mature: 31753

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGKRKRKLSVAIITFNEEKNIGDCIRSVVSFADEIIVLDSLSTDKTKEIATSFPKVRFL
CCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHCCCCEEEE
EAPFPGHVEQKNKAISFCQNEWIFSLDADERADEVLQNSIQTFLETDEVHCDGYKIARLT
ECCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCEECCCEEHHHHH
FHLGRWIRYSGWYPQRRYRLFKKANASWIGENPHDFIELKPGSFGKVMKGNILHYSFTDF
HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCC
SHQITTINQFSSIVAYTRYAKGERFSLMKTIIKPLGKFFEIYLFKFGFLDGIPGLWIALA
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
SSFSTYLKYAKLYELDQLKIQRPSNIRKDYGKK
HHHHHHHHHHHHHHHHHHEECCCCCHHHHCCCC
>Mature Secondary Structure
MEGKRKRKLSVAIITFNEEKNIGDCIRSVVSFADEIIVLDSLSTDKTKEIATSFPKVRFL
CCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHCCCCEEEE
EAPFPGHVEQKNKAISFCQNEWIFSLDADERADEVLQNSIQTFLETDEVHCDGYKIARLT
ECCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCEECCCEEHHHHH
FHLGRWIRYSGWYPQRRYRLFKKANASWIGENPHDFIELKPGSFGKVMKGNILHYSFTDF
HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCC
SHQITTINQFSSIVAYTRYAKGERFSLMKTIIKPLGKFFEIYLFKFGFLDGIPGLWIALA
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
SSFSTYLKYAKLYELDQLKIQRPSNIRKDYGKK
HHHHHHHHHHHHHHHHHHEECCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]