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The map label for this gene is fliN [H]

Identifier: 183220986

GI number: 183220986

Start: 1676067

End: 1676585

Strand: Direct

Name: fliN [H]

Synonym: LEPBI_I1599

Alternate gene names: 183220986

Gene position: 1676067-1676585 (Clockwise)

Preceding gene: 183220981

Following gene: 183220987

Centisome position: 46.56

GC content: 48.94

Gene sequence:

>519_bases
ATGGGTGAAGGTTCACTATCACAAGAAGACATTGACGCACTACTCGGCGGATTTAGCGGCGGAAGCACACCTGCGGGTGG
TGGTTCTGGCGGAGGTGGTGGCGGTTTGGACGACCTCGATGCGCTCGTTGGCGGTGGTGGTGGGGACGATAATGGTCCAT
CCTTTGCCGACATAGCAGCAGCCCTTGGCCCAAGCGCGACACCTGCCCCTTCCAGATCCCAATCCAAATCCCAATCTAGC
TCTGGGAATAATACGGCAAATCTCAATCTTTTACTCGATGTTACCTTACAACTCACAATTGAACTTGGAAGGACTACGAT
GTTCATTAAAGACGTGTTACAACTCTCAGAAGGGACTGTTGTGGAACTCGATAAAAATATCGGAGAGGAATTAGACATTT
TAGCCAATGGCAAACTCGTTGGTCGTGGGAAACTGATCGTCCTCGATGATTATTACGGGGTACAAATCACACAAATTGTA
GATCCAATGGAACGATTGGGTGGGCCTGCGTTTTTATAA

Upstream 100 bases:

>100_bases
GGGGAATTGGACATAAGGAACAAAATAGGGAAGATTGTCTTTTTTTTCAAGGAAGGATTTTGGTTTCCTCCGACGAATAG
AATGTAGAGGTTGTAGGATT

Downstream 100 bases:

>100_bases
GGTGATCTCTTTTTTACCGGAAGAAGGATAGGAAACAATTGGAACCGATCGGACACGGATACACAATCGAGCGAATCACA
AATCCAACTGACTCGTTACA

Product: flagellar motor switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MGEGSLSQEDIDALLGGFSGGSTPAGGGSGGGGGGLDDLDALVGGGGGDDNGPSFADIAAALGPSATPAPSRSQSKSQSS
SGNNTANLNLLLDVTLQLTIELGRTTMFIKDVLQLSEGTVVELDKNIGEELDILANGKLVGRGKLIVLDDYYGVQITQIV
DPMERLGGPAFL

Sequences:

>Translated_172_residues
MGEGSLSQEDIDALLGGFSGGSTPAGGGSGGGGGGLDDLDALVGGGGGDDNGPSFADIAAALGPSATPAPSRSQSKSQSS
SGNNTANLNLLLDVTLQLTIELGRTTMFIKDVLQLSEGTVVELDKNIGEELDILANGKLVGRGKLIVLDDYYGVQITQIV
DPMERLGGPAFL
>Mature_171_residues
GEGSLSQEDIDALLGGFSGGSTPAGGGSGGGGGGLDDLDALVGGGGGDDNGPSFADIAAALGPSATPAPSRSQSKSQSSS
GNNTANLNLLLDVTLQLTIELGRTTMFIKDVLQLSEGTVVELDKNIGEELDILANGKLVGRGKLIVLDDYYGVQITQIVD
PMERLGGPAFL

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=125, Percent_Identity=40.8, Blast_Score=89, Evalue=2e-19,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 17248; Mature: 17117

Theoretical pI: Translated: 3.81; Mature: 3.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEGSLSQEDIDALLGGFSGGSTPAGGGSGGGGGGLDDLDALVGGGGGDDNGPSFADIAA
CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHH
ALGPSATPAPSRSQSKSQSSSGNNTANLNLLLDVTLQLTIELGRTTMFIKDVLQLSEGTV
HHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHCCCCE
VELDKNIGEELDILANGKLVGRGKLIVLDDYYGVQITQIVDPMERLGGPAFL
EEECCCCCCCEEEEECCEEECCCEEEEEECCCCEEHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GEGSLSQEDIDALLGGFSGGSTPAGGGSGGGGGGLDDLDALVGGGGGDDNGPSFADIAA
CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHH
ALGPSATPAPSRSQSKSQSSSGNNTANLNLLLDVTLQLTIELGRTTMFIKDVLQLSEGTV
HHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHCCCCE
VELDKNIGEELDILANGKLVGRGKLIVLDDYYGVQITQIVDPMERLGGPAFL
EEECCCCCCCEEEEECCEEECCCEEEEEECCCCEEHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]