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The map label for this gene is degT [H]

Identifier: 183220453

GI number: 183220453

Start: 1091655

End: 1092776

Strand: Direct

Name: degT [H]

Synonym: LEPBI_I1050

Alternate gene names: 183220453

Gene position: 1091655-1092776 (Clockwise)

Preceding gene: 183220452

Following gene: 183220454

Centisome position: 30.33

GC content: 43.49

Gene sequence:

>1122_bases
ATGGCAGTTCCATTTATAGATATCAAACGTTTTGAACCAGGATTTTTGGACACCTGGAATGAAAAAGTAAAGTCCATGTC
GGAAAACGCGCAGTTCATTGGCGGAAACGAAGTCACTGACTTAGAAACAAACCTTGCCACTTGGGCCGAAACCAAGTATG
CCATTGGTTGTGCCAATGGAACCGATGCCTTACAACTGGCGTTACGTGCAGTGGGTGTGGGTCGTGGCGACAAAGTATTG
TTACCCGATTCAACCTTTTGGGCCACTTTTGAAGCGGTCGTGAATGTGGGTGGGGATCCTTATACTGTGGATACCAATCC
TGTGGATTTACAAATGGATTTCCAAGTCTTCCAAGAAGCAGTGGAAAAAGTAAAACCAAAAGCGGCTCTTGTTGTGCATC
TTTATGGATGGGGGACAGCTAAGATTCAAGAACTTCGAAAGTTTTGCAAAGAAAAAAATGTTGCCCTTATCGAAGACGGG
GCACAATGTTTTGGTGTCAAACACAACGGAAACTCCCTCTACAAAGAAGCACTCATCTCAACCACATCCTTTTATCCGGC
GAAGGTGTTAGGTGCTGCAGGTGACGGTGGAGCTGTATTCACAAACGATGAAGAGTTATCGGTTGTGACAAGACGACTTG
TGAACCACGGAAGGACATCTCATTACGAACATGGACTTGTGGGTTGGAACTCAAGACTTGATTCTTTACAAGCTGCTTTT
CTCAATCTTTCCCTAAAACACTTAGGGAAACGTATCGAATCTCGCAAAACCTCGCAAAACATCTATTATAAGGAATTACC
AGGTCTTGGGATTGGAGTGATCCAACCACCAAAAGGGTATGACGAAAATGGATATTGTAACGTGACTTTGGTGGATCCTG
AAGTTCGACCTAAAATCGAAGCTGTCTTAAAAGAAAAAGGAATTGGTTTTGGGAATATTTATCCTGGAGCAATGTCAGAC
CAACCAGGTGCGAAACCTTATCTTGTCGAACGATTTGGAAAAGACAGCCATGCTCGTCGCATTTCCAAGTCAGTTCTCAA
CTTCCCACTCTTTGCTTATATGACAAACTCCGAAATGGACGAAGTGTTGAGTGCGATAAAAGCGTATAACGCTAGTAAAT
GA

Upstream 100 bases:

>100_bases
TCTGTATTGGGCTTTATTTTTCCTTTGGACTTTGTATTCGAAAGAGTTCAATGAATGGCTTCATCAAGTATTTGCAAATA
AGTAAAAGAAAGGGCGAACA

Downstream 100 bases:

>100_bases
TGGAAAAACTTCGGGTAGGAGTCTTTTTATTCTTTTTACTCATCCTTGCGGTGTTAACGTTTAGTTTGTCTAAAAGTTGG
CGCCTATACGATGGAGGGTA

Product: putative pyridoxal-phosphate-dependent aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MAVPFIDIKRFEPGFLDTWNEKVKSMSENAQFIGGNEVTDLETNLATWAETKYAIGCANGTDALQLALRAVGVGRGDKVL
LPDSTFWATFEAVVNVGGDPYTVDTNPVDLQMDFQVFQEAVEKVKPKAALVVHLYGWGTAKIQELRKFCKEKNVALIEDG
AQCFGVKHNGNSLYKEALISTTSFYPAKVLGAAGDGGAVFTNDEELSVVTRRLVNHGRTSHYEHGLVGWNSRLDSLQAAF
LNLSLKHLGKRIESRKTSQNIYYKELPGLGIGVIQPPKGYDENGYCNVTLVDPEVRPKIEAVLKEKGIGFGNIYPGAMSD
QPGAKPYLVERFGKDSHARRISKSVLNFPLFAYMTNSEMDEVLSAIKAYNASK

Sequences:

>Translated_373_residues
MAVPFIDIKRFEPGFLDTWNEKVKSMSENAQFIGGNEVTDLETNLATWAETKYAIGCANGTDALQLALRAVGVGRGDKVL
LPDSTFWATFEAVVNVGGDPYTVDTNPVDLQMDFQVFQEAVEKVKPKAALVVHLYGWGTAKIQELRKFCKEKNVALIEDG
AQCFGVKHNGNSLYKEALISTTSFYPAKVLGAAGDGGAVFTNDEELSVVTRRLVNHGRTSHYEHGLVGWNSRLDSLQAAF
LNLSLKHLGKRIESRKTSQNIYYKELPGLGIGVIQPPKGYDENGYCNVTLVDPEVRPKIEAVLKEKGIGFGNIYPGAMSD
QPGAKPYLVERFGKDSHARRISKSVLNFPLFAYMTNSEMDEVLSAIKAYNASK
>Mature_372_residues
AVPFIDIKRFEPGFLDTWNEKVKSMSENAQFIGGNEVTDLETNLATWAETKYAIGCANGTDALQLALRAVGVGRGDKVLL
PDSTFWATFEAVVNVGGDPYTVDTNPVDLQMDFQVFQEAVEKVKPKAALVVHLYGWGTAKIQELRKFCKEKNVALIEDGA
QCFGVKHNGNSLYKEALISTTSFYPAKVLGAAGDGGAVFTNDEELSVVTRRLVNHGRTSHYEHGLVGWNSRLDSLQAAFL
NLSLKHLGKRIESRKTSQNIYYKELPGLGIGVIQPPKGYDENGYCNVTLVDPEVRPKIEAVLKEKGIGFGNIYPGAMSDQ
PGAKPYLVERFGKDSHARRISKSVLNFPLFAYMTNSEMDEVLSAIKAYNASK

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=366, Percent_Identity=24.5901639344262, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI2367285, Length=340, Percent_Identity=24.1176470588235, Blast_Score=78, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 41039; Mature: 40908

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVPFIDIKRFEPGFLDTWNEKVKSMSENAQFIGGNEVTDLETNLATWAETKYAIGCANG
CCCCCEEHCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHCCEEEEEECCC
TDALQLALRAVGVGRGDKVLLPDSTFWATFEAVVNVGGDPYTVDTNPVDLQMDFQVFQEA
HHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCCEEECCCCEEEEECHHHHHHH
VEKVKPKAALVVHLYGWGTAKIQELRKFCKEKNVALIEDGAQCFGVKHNGNSLYKEALIS
HHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCEEEEEEECCCHHHHHHHHH
TTSFYPAKVLGAAGDGGAVFTNDEELSVVTRRLVNHGRTSHYEHGLVGWNSRLDSLQAAF
HCCCCCHHHEECCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
LNLSLKHLGKRIESRKTSQNIYYKELPGLGIGVIQPPKGYDENGYCNVTLVDPEVRPKIE
HHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEEECCCCCCCCCCEEEEEEECCCCCHHHH
AVLKEKGIGFGNIYPGAMSDQPGAKPYLVERFGKDSHARRISKSVLNFPLFAYMTNSEMD
HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCHHH
EVLSAIKAYNASK
HHHHHHHHHCCCC
>Mature Secondary Structure 
AVPFIDIKRFEPGFLDTWNEKVKSMSENAQFIGGNEVTDLETNLATWAETKYAIGCANG
CCCCEEHCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHCCEEEEEECCC
TDALQLALRAVGVGRGDKVLLPDSTFWATFEAVVNVGGDPYTVDTNPVDLQMDFQVFQEA
HHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCCEEECCCCEEEEECHHHHHHH
VEKVKPKAALVVHLYGWGTAKIQELRKFCKEKNVALIEDGAQCFGVKHNGNSLYKEALIS
HHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCEEEEEEECCCHHHHHHHHH
TTSFYPAKVLGAAGDGGAVFTNDEELSVVTRRLVNHGRTSHYEHGLVGWNSRLDSLQAAF
HCCCCCHHHEECCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
LNLSLKHLGKRIESRKTSQNIYYKELPGLGIGVIQPPKGYDENGYCNVTLVDPEVRPKIE
HHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEEECCCCCCCCCCEEEEEEECCCCCHHHH
AVLKEKGIGFGNIYPGAMSDQPGAKPYLVERFGKDSHARRISKSVLNFPLFAYMTNSEMD
HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCHHH
EVLSAIKAYNASK
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]