Click here to switch to the map view.

The map label for this gene is yfmR [H]

Identifier: 183220126

GI number: 183220126

Start: 723898

End: 725775

Strand: Reverse

Name: yfmR [H]

Synonym: LEPBI_I0714

Alternate gene names: 183220126

Gene position: 725775-723898 (Counterclockwise)

Preceding gene: 183220127

Following gene: 183220125

Centisome position: 20.16

GC content: 38.39

Gene sequence:

>1878_bases
ATGGACATTGTGCTAGTCTCTGTATCCAAACTTTCCAAAACCATCGGCGAAAAAAAACTTTTTTCTAACTTAGATTTCTC
CATCAGTGAAGGAGAAAAACTTGCCATCGTTGGGATCAACGGATCAGGTAAGTCCACACTGCTACGTGCCATCTTAGGGA
ATGAAGAAACAGATTCTGGCCAAATCATCAAAAACAACCAACTTAAAATTTCCCTCCTGGATCAAAATCCTATCTTTGAT
CCAAAAGAAACCATCCTCGATCATATTTACAAAGGGGATAACAAACTCGTAAAAACCATCCGTAAGTATGAAGATATTTG
CGAACGTATGAGCGAAGGAGAAGAAGGTCTCGATGATGAATTCACAAATGCTTCCCAAGAAATGGACAGACTCTCTGCAT
GGGATTATGAACAACAAATTAAGTCCATTTTACGCGAATTAGGCGTCGAAAAATTAGAACGAAAGATGTCTGAATTATCA
GGTGGAATGTTAAAAAAGGTAGAACTTGCCAAATCCCTCATTGATGAAAGTAATTTACTCATCCTCGATGAACCAACCAA
CCATTTGGATGTAAAATCCATTTTATGGTTAGAAGATTATTTGGCTGGTCTTGACAAAGCCATTTTACTCATCACACACG
ACCGTTATTTTTTAGATCGCATCGTAACAAAAATTTTGGAACTTGATCGTGGTAATTATTTTTTATACGAAGGCAACTAT
TCCATTTATTTAGAACGAAAGGTAGAACGAGAAGAAACCCTTCAAAAACAAGAAGATAAAATCAAACAATTCTTGAAACA
AGAAGTGAAGTGGCTGAAAAGACAACCCAAAGCTCGGACAACGAAACAAAAAGCAAGGATTGACCGCGCAAACGAACTAC
AAACGAGAGAAAAACGAGAAATCCAAAAAGATTTAGAACTCAGTGTCGCCGCAAAACGCCAAGGGAAAACCATATTAGAG
ATTCATAATCTTAAAAAATCCATTGGTGACAGAGTTCTCATCAATGAATTTACCTATACCTTCAAAGCCAAAGAAAGACT
CGGGATCATTGGCCCCAATGGGATAGGGAAATCCACTCTTCTCAATTTGATGGCAGGTCGACTAACACCCGATAGCGGTT
ATTTGAAACCAGGGCTCAATACCAAAGTTGGGTACTTTGACCAAACGAGTGCTGAACTTCCATTAGATCGAAATGTACTC
GAATACATCAAAGATGTGGCAGGTGAGATGATTGAAACCGAATCAGGTGAAAAAATTTCAGCAGCAAAAATGTTGGAACG
GTTTTTATTTGATGGGAAATTACAATACACACCGATCGCCAAACTATCGGGTGGTGAAAGGCGCAGGCTTTATCTTGTTC
AAATTTTAATGACAGGGCCAAACTTTCTCATCTTGGATGAACCAACCAATGATCTCGACATCCAAACCCTTTCCGTTTTG
GAATCTTTTTTAGATGAGTTTCCTGGAACGGTAGTGATTGTTTCGCATGATCGTTATTTTCTCGACCGAACGGCAGAAAG
CCTCCTCATCTTTCGCAAAGAAGGCAAACTCGACCATTTCATTGGAACCTTTTCTTCCTTTTTGGAAACTGATTCACTCG
AAACCGAAAACGAACTAAGTTCTATGAAACCGAATTCCCCCCAAGAAATGGTAAAAACGATTGAAAAACCCAAACATTCG
AAACAAGACCAAAAGAAAATCCAAACACTCGAAAAAGAAATCGCTTCTCTTGAAGGGAAAAAGGCAATTTTAGAATCAAA
ATTGAGTACATTCGCAAATGATCATATGGAACTGAACAAAATATCCGAAGAAATCCAAACGATTGAGACGGAAATTCTTT
ACAAAATGGAGGAATGGGAAATGTTTCAAACCGAATGA

Upstream 100 bases:

>100_bases
AAAACCTGTTGTCCTAAATACGATTGCGGAGAAACTGAAACACTGGCTTTTGAAACATTAATGCTGATAACGATTGTCCG
AAAGAGGCCATTTCTTTCTC

Downstream 100 bases:

>100_bases
AAACGGTCCAGTATACAAGAATTCTCCTTTGGACCCCCATCATCCTCATTGGGTATTTCATCTCAGCACAAATTGGTTCA
ATATTGCATTTCTCAATAGC

Product: ABC transporter ATP binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 625; Mature: 625

Protein sequence:

>625_residues
MDIVLVSVSKLSKTIGEKKLFSNLDFSISEGEKLAIVGINGSGKSTLLRAILGNEETDSGQIIKNNQLKISLLDQNPIFD
PKETILDHIYKGDNKLVKTIRKYEDICERMSEGEEGLDDEFTNASQEMDRLSAWDYEQQIKSILRELGVEKLERKMSELS
GGMLKKVELAKSLIDESNLLILDEPTNHLDVKSILWLEDYLAGLDKAILLITHDRYFLDRIVTKILELDRGNYFLYEGNY
SIYLERKVEREETLQKQEDKIKQFLKQEVKWLKRQPKARTTKQKARIDRANELQTREKREIQKDLELSVAAKRQGKTILE
IHNLKKSIGDRVLINEFTYTFKAKERLGIIGPNGIGKSTLLNLMAGRLTPDSGYLKPGLNTKVGYFDQTSAELPLDRNVL
EYIKDVAGEMIETESGEKISAAKMLERFLFDGKLQYTPIAKLSGGERRRLYLVQILMTGPNFLILDEPTNDLDIQTLSVL
ESFLDEFPGTVVIVSHDRYFLDRTAESLLIFRKEGKLDHFIGTFSSFLETDSLETENELSSMKPNSPQEMVKTIEKPKHS
KQDQKKIQTLEKEIASLEGKKAILESKLSTFANDHMELNKISEEIQTIETEILYKMEEWEMFQTE

Sequences:

>Translated_625_residues
MDIVLVSVSKLSKTIGEKKLFSNLDFSISEGEKLAIVGINGSGKSTLLRAILGNEETDSGQIIKNNQLKISLLDQNPIFD
PKETILDHIYKGDNKLVKTIRKYEDICERMSEGEEGLDDEFTNASQEMDRLSAWDYEQQIKSILRELGVEKLERKMSELS
GGMLKKVELAKSLIDESNLLILDEPTNHLDVKSILWLEDYLAGLDKAILLITHDRYFLDRIVTKILELDRGNYFLYEGNY
SIYLERKVEREETLQKQEDKIKQFLKQEVKWLKRQPKARTTKQKARIDRANELQTREKREIQKDLELSVAAKRQGKTILE
IHNLKKSIGDRVLINEFTYTFKAKERLGIIGPNGIGKSTLLNLMAGRLTPDSGYLKPGLNTKVGYFDQTSAELPLDRNVL
EYIKDVAGEMIETESGEKISAAKMLERFLFDGKLQYTPIAKLSGGERRRLYLVQILMTGPNFLILDEPTNDLDIQTLSVL
ESFLDEFPGTVVIVSHDRYFLDRTAESLLIFRKEGKLDHFIGTFSSFLETDSLETENELSSMKPNSPQEMVKTIEKPKHS
KQDQKKIQTLEKEIASLEGKKAILESKLSTFANDHMELNKISEEIQTIETEILYKMEEWEMFQTE
>Mature_625_residues
MDIVLVSVSKLSKTIGEKKLFSNLDFSISEGEKLAIVGINGSGKSTLLRAILGNEETDSGQIIKNNQLKISLLDQNPIFD
PKETILDHIYKGDNKLVKTIRKYEDICERMSEGEEGLDDEFTNASQEMDRLSAWDYEQQIKSILRELGVEKLERKMSELS
GGMLKKVELAKSLIDESNLLILDEPTNHLDVKSILWLEDYLAGLDKAILLITHDRYFLDRIVTKILELDRGNYFLYEGNY
SIYLERKVEREETLQKQEDKIKQFLKQEVKWLKRQPKARTTKQKARIDRANELQTREKREIQKDLELSVAAKRQGKTILE
IHNLKKSIGDRVLINEFTYTFKAKERLGIIGPNGIGKSTLLNLMAGRLTPDSGYLKPGLNTKVGYFDQTSAELPLDRNVL
EYIKDVAGEMIETESGEKISAAKMLERFLFDGKLQYTPIAKLSGGERRRLYLVQILMTGPNFLILDEPTNDLDIQTLSVL
ESFLDEFPGTVVIVSHDRYFLDRTAESLLIFRKEGKLDHFIGTFSSFLETDSLETENELSSMKPNSPQEMVKTIEKPKHS
KQDQKKIQTLEKEIASLEGKKAILESKLSTFANDHMELNKISEEIQTIETEILYKMEEWEMFQTE

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI10947135, Length=564, Percent_Identity=29.4326241134752, Blast_Score=204, Evalue=2e-52,
Organism=Homo sapiens, GI69354671, Length=564, Percent_Identity=29.4326241134752, Blast_Score=204, Evalue=2e-52,
Organism=Homo sapiens, GI148612853, Length=540, Percent_Identity=28.3333333333333, Blast_Score=201, Evalue=2e-51,
Organism=Homo sapiens, GI10947137, Length=585, Percent_Identity=28.5470085470085, Blast_Score=189, Evalue=7e-48,
Organism=Homo sapiens, GI27881506, Length=540, Percent_Identity=29.6296296296296, Blast_Score=189, Evalue=7e-48,
Organism=Escherichia coli, GI2367384, Length=538, Percent_Identity=35.5018587360595, Blast_Score=342, Evalue=4e-95,
Organism=Escherichia coli, GI1787182, Length=639, Percent_Identity=32.0813771517997, Blast_Score=328, Evalue=6e-91,
Organism=Escherichia coli, GI1789751, Length=599, Percent_Identity=30.7178631051753, Blast_Score=256, Evalue=3e-69,
Organism=Escherichia coli, GI1787041, Length=548, Percent_Identity=31.021897810219, Blast_Score=232, Evalue=6e-62,
Organism=Escherichia coli, GI87081782, Length=506, Percent_Identity=25.6916996047431, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1788506, Length=551, Percent_Identity=24.6823956442831, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI1788165, Length=227, Percent_Identity=30.3964757709251, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI87081834, Length=239, Percent_Identity=28.4518828451883, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI145693107, Length=554, Percent_Identity=22.9241877256318, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787370, Length=230, Percent_Identity=26.9565217391304, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1786703, Length=216, Percent_Identity=30.0925925925926, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1788761, Length=200, Percent_Identity=30, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1786698, Length=201, Percent_Identity=28.8557213930348, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1786563, Length=194, Percent_Identity=29.3814432989691, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1790467, Length=231, Percent_Identity=25.974025974026, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI48994883, Length=268, Percent_Identity=28.3582089552239, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1786253, Length=181, Percent_Identity=29.2817679558011, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1789891, Length=202, Percent_Identity=23.7623762376238, Blast_Score=64, Evalue=4e-11,
Organism=Escherichia coli, GI1788897, Length=208, Percent_Identity=27.4038461538462, Blast_Score=63, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=530, Percent_Identity=28.1132075471698, Blast_Score=216, Evalue=4e-56,
Organism=Caenorhabditis elegans, GI17555318, Length=540, Percent_Identity=27.037037037037, Blast_Score=201, Evalue=1e-51,
Organism=Caenorhabditis elegans, GI17553372, Length=537, Percent_Identity=29.0502793296089, Blast_Score=180, Evalue=2e-45,
Organism=Saccharomyces cerevisiae, GI6320874, Length=527, Percent_Identity=30.3605313092979, Blast_Score=201, Evalue=3e-52,
Organism=Saccharomyces cerevisiae, GI6321121, Length=540, Percent_Identity=27.037037037037, Blast_Score=171, Evalue=5e-43,
Organism=Saccharomyces cerevisiae, GI6325030, Length=390, Percent_Identity=26.6666666666667, Blast_Score=124, Evalue=7e-29,
Organism=Saccharomyces cerevisiae, GI6324314, Length=404, Percent_Identity=24.5049504950495, Blast_Score=115, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6323278, Length=402, Percent_Identity=25.8706467661692, Blast_Score=112, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24641342, Length=528, Percent_Identity=30.6818181818182, Blast_Score=237, Evalue=1e-62,
Organism=Drosophila melanogaster, GI24642252, Length=532, Percent_Identity=28.7593984962406, Blast_Score=201, Evalue=1e-51,
Organism=Drosophila melanogaster, GI18859989, Length=532, Percent_Identity=28.7593984962406, Blast_Score=201, Evalue=1e-51,
Organism=Drosophila melanogaster, GI24666836, Length=543, Percent_Identity=28.1767955801105, Blast_Score=195, Evalue=6e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 71744; Mature: 71744

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIVLVSVSKLSKTIGEKKLFSNLDFSISEGEKLAIVGINGSGKSTLLRAILGNEETDSG
CCEEEEEHHHHHHHHHHHHHHHCCCCEECCCCEEEEEEECCCCHHHHHHHHHCCCCCCCC
QIIKNNQLKISLLDQNPIFDPKETILDHIYKGDNKLVKTIRKYEDICERMSEGEEGLDDE
CEEECCCEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
FTNASQEMDRLSAWDYEQQIKSILRELGVEKLERKMSELSGGMLKKVELAKSLIDESNLL
HCCHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEE
ILDEPTNHLDVKSILWLEDYLAGLDKAILLITHDRYFLDRIVTKILELDRGNYFLYEGNY
EEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCE
SIYLERKVEREETLQKQEDKIKQFLKQEVKWLKRQPKARTTKQKARIDRANELQTREKRE
EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHH
IQKDLELSVAAKRQGKTILEIHNLKKSIGDRVLINEFTYTFKAKERLGIIGPNGIGKSTL
HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEEHHEEEEEHHCCCCEECCCCCCHHHH
LNLMAGRLTPDSGYLKPGLNTKVGYFDQTSAELPLDRNVLEYIKDVAGEMIETESGEKIS
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHH
AAKMLERFLFDGKLQYTPIAKLSGGERRRLYLVQILMTGPNFLILDEPTNDLDIQTLSVL
HHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCHHHHHHH
ESFLDEFPGTVVIVSHDRYFLDRTAESLLIFRKEGKLDHFIGTFSSFLETDSLETENELS
HHHHHHCCCEEEEEECCHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHH
SMKPNSPQEMVKTIEKPKHSKQDQKKIQTLEKEIASLEGKKAILESKLSTFANDHMELNK
HCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHH
ISEEIQTIETEILYKMEEWEMFQTE
HHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDIVLVSVSKLSKTIGEKKLFSNLDFSISEGEKLAIVGINGSGKSTLLRAILGNEETDSG
CCEEEEEHHHHHHHHHHHHHHHCCCCEECCCCEEEEEEECCCCHHHHHHHHHCCCCCCCC
QIIKNNQLKISLLDQNPIFDPKETILDHIYKGDNKLVKTIRKYEDICERMSEGEEGLDDE
CEEECCCEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
FTNASQEMDRLSAWDYEQQIKSILRELGVEKLERKMSELSGGMLKKVELAKSLIDESNLL
HCCHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEE
ILDEPTNHLDVKSILWLEDYLAGLDKAILLITHDRYFLDRIVTKILELDRGNYFLYEGNY
EEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCE
SIYLERKVEREETLQKQEDKIKQFLKQEVKWLKRQPKARTTKQKARIDRANELQTREKRE
EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHH
IQKDLELSVAAKRQGKTILEIHNLKKSIGDRVLINEFTYTFKAKERLGIIGPNGIGKSTL
HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEEHHEEEEEHHCCCCEECCCCCCHHHH
LNLMAGRLTPDSGYLKPGLNTKVGYFDQTSAELPLDRNVLEYIKDVAGEMIETESGEKIS
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHH
AAKMLERFLFDGKLQYTPIAKLSGGERRRLYLVQILMTGPNFLILDEPTNDLDIQTLSVL
HHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCHHHHHHH
ESFLDEFPGTVVIVSHDRYFLDRTAESLLIFRKEGKLDHFIGTFSSFLETDSLETENELS
HHHHHHCCCEEEEEECCHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHH
SMKPNSPQEMVKTIEKPKHSKQDQKKIQTLEKEIASLEGKKAILESKLSTFANDHMELNK
HCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHH
ISEEIQTIETEILYKMEEWEMFQTE
HHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]