| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is btuB [H]
Identifier: 183219918
GI number: 183219918
Start: 496739
End: 498817
Strand: Reverse
Name: btuB [H]
Synonym: LEPBI_I0500
Alternate gene names: 183219918
Gene position: 498817-496739 (Counterclockwise)
Preceding gene: 183219920
Following gene: 183219917
Centisome position: 13.86
GC content: 37.23
Gene sequence:
>2079_bases ATGGTTTCCAAATTCAATTTATTTTTATGCATGGGATTCTTACTCGGACCAATTCTTCTATATGGGCAAGAGACTCCAAA AAAAGAACCAGAAACCATCGAAATCAAAGCCAATGTGCAATCCTCTTCTCAAAATAGTAACTTTAGCAAAAACCCAACTG GTTTTCAAAAGGAAATTCATTTAGATTCAGCTAACACGAGATATACGAGTCTTCCCGATATCCTCAACCGAGAAGCGGGA GTCAGGATTCGCCAATATGGAGGTCTTGGATCCTATTCCACACTTTCCCTTCGAGGAACCAATCCCAACCAATCCAAAAT TTATTGGAATGGAGTTCCCATCAATAATTCGTTTGGTGGTGAAATTAACTTAGCAGATTTACCGTTTGATAATTTAGAAA AGATTGAAATTTACAAATCTGGGACTCCTGCTGGTTTTTCTGGATCGGCCATTGGAGGTTCGATCAACTTGGTTTCCAAA ACAAAATTTGAAAAACCAATCACACGAGTCAATTTGATGGGTGGAAGTTTCAAAACAGCAAAAACAACGGTAACTCATAT GGACCAATTCACCAATGGTTCTTATTTTGTGCAGGCTCTCCACGAAACTTCCGACCAAAATTTTACCTATCTCAATAATA AAGGGACAGTATTATTCAATACATATGATGATACGATTGATGAAAGAAAGAATGCACAGTTTCGTAAAACTGGGTTTACT GGGAATCTATCCTTTGACATAGGCAAAACCAAAATCAATTTATTAAATGATTATATACATAGAAAACAAGGTCTACCAGG TCCAGGGAATCGGCAAACCACTTCGGTGGGGCGAGTGTTTAGTAAACTTTCATCGGCGATCACAACAGAAACCAATGAGT TTATATTCACCAATTTGACATTGGAAACAAAAACCTATGGGAACTTTTCAAAAGATGATTTGTTTGATCCAAAATCAGAA TTTAGTTTTGGAACACCCAATGCGTATACCAAAACAAACCAATACGGGTTTCAATTATCTCCCACTTTGTACTTGTTAGA CTATTATCAGGTTTTACGTGCCTCCGTCTTAACGGAACAAGAATTTTTCACACGGTATGAAAAACGTGCCAATCATGAAA CGGAAAGAAAAGAACCAAAAAAAAGAAGGGATACTCAGAGTTTTACCTTCCAAGATGAAATACGATTATTTTCCAATCGT CTCTTTCTTGTCCCACAAGTACGTTTTGAACGGTATACGGATCGATTCGGGAAAGATGAAACAAGCATTCGTAACCAACT CTTAGATCCACTCACCGATGTTTTTACTGTAAGGCAAAATTTCACCAATCCTAGTTTTGGCTTAAAAATCATCTGGATCA AAAAAGAAAATTGGGAATGGGGAACATTAGCCAACATCAGTAAAGATTTTCGAATTCCCAGCTTTATTGAATTATTCGGT GAAAGAGGAAGTATCGTCGGGAATACAAAATTAAGGCCAGAACAAAGTAGAAACGGGGATTTTGGTTTTTATCTCCATAC CAAAATTGGATCGGGATGGAAAATCCAATCGGATGTTTCCTACTTTCAAAAACGAATATATGATATGATTTTGTTTTTGC CAAATTCTCAGTTTACTCTGAGGCCAGAAAACGTAGACCAAGCATTCATCCGGGGTGCCGAAACTAGTCACAATATCATT TGGAACAAAGGACTTAAGTTTAACTTCAATTATACCTACCAAGATGCCAGAAATTACTCCGACTCACCTGCGTTAAATGG AAAATACTTACCACTTCGTTCCAAAAGCCAAGGAAGCGCCTTACTTGCCTTTTTTAATGAAACATCCGAAATTGGAATTG AATACCAATACATTGGAGCCAATTTTAGAGATCGAACCAATGAGTATTTGGGATTTTTACCAGCCAGACAATTTTGGAAT TTGTACATCCAATATTCTGCATATAAAAACAAAGAAACAGGAAATGAATTGATTTTTGGATTTGAAGTGCGAAACGTAAC AGACAAACGTGTAGAAGATTTGGTGGGTTACCCGTTACCGGGCCGTAGTTATTATCTGACTGGGAGTTATCGATTCTAA
Upstream 100 bases:
>100_bases ACGTCGTAATGTCTCATGGGACAATGCTTTTTTCCTTTAGGGAATTGACACTCAATTTTCCTATTCCAGTTTGGCAAGGT ACCGAGAAAAAAAGGACTTC
Downstream 100 bases:
>100_bases TGGATACAATTCCTACAAACAAAGGCCCCCATTGGATACTCCTTCTTTCTATGTTTCTTGTTTTCCAATGTAGCCAATTG GAAATAAAAAAACCAAGTTT
Product: putative TonB-dependent outer membrane receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 692; Mature: 692
Protein sequence:
>692_residues MVSKFNLFLCMGFLLGPILLYGQETPKKEPETIEIKANVQSSSQNSNFSKNPTGFQKEIHLDSANTRYTSLPDILNREAG VRIRQYGGLGSYSTLSLRGTNPNQSKIYWNGVPINNSFGGEINLADLPFDNLEKIEIYKSGTPAGFSGSAIGGSINLVSK TKFEKPITRVNLMGGSFKTAKTTVTHMDQFTNGSYFVQALHETSDQNFTYLNNKGTVLFNTYDDTIDERKNAQFRKTGFT GNLSFDIGKTKINLLNDYIHRKQGLPGPGNRQTTSVGRVFSKLSSAITTETNEFIFTNLTLETKTYGNFSKDDLFDPKSE FSFGTPNAYTKTNQYGFQLSPTLYLLDYYQVLRASVLTEQEFFTRYEKRANHETERKEPKKRRDTQSFTFQDEIRLFSNR LFLVPQVRFERYTDRFGKDETSIRNQLLDPLTDVFTVRQNFTNPSFGLKIIWIKKENWEWGTLANISKDFRIPSFIELFG ERGSIVGNTKLRPEQSRNGDFGFYLHTKIGSGWKIQSDVSYFQKRIYDMILFLPNSQFTLRPENVDQAFIRGAETSHNII WNKGLKFNFNYTYQDARNYSDSPALNGKYLPLRSKSQGSALLAFFNETSEIGIEYQYIGANFRDRTNEYLGFLPARQFWN LYIQYSAYKNKETGNELIFGFEVRNVTDKRVEDLVGYPLPGRSYYLTGSYRF
Sequences:
>Translated_692_residues MVSKFNLFLCMGFLLGPILLYGQETPKKEPETIEIKANVQSSSQNSNFSKNPTGFQKEIHLDSANTRYTSLPDILNREAG VRIRQYGGLGSYSTLSLRGTNPNQSKIYWNGVPINNSFGGEINLADLPFDNLEKIEIYKSGTPAGFSGSAIGGSINLVSK TKFEKPITRVNLMGGSFKTAKTTVTHMDQFTNGSYFVQALHETSDQNFTYLNNKGTVLFNTYDDTIDERKNAQFRKTGFT GNLSFDIGKTKINLLNDYIHRKQGLPGPGNRQTTSVGRVFSKLSSAITTETNEFIFTNLTLETKTYGNFSKDDLFDPKSE FSFGTPNAYTKTNQYGFQLSPTLYLLDYYQVLRASVLTEQEFFTRYEKRANHETERKEPKKRRDTQSFTFQDEIRLFSNR LFLVPQVRFERYTDRFGKDETSIRNQLLDPLTDVFTVRQNFTNPSFGLKIIWIKKENWEWGTLANISKDFRIPSFIELFG ERGSIVGNTKLRPEQSRNGDFGFYLHTKIGSGWKIQSDVSYFQKRIYDMILFLPNSQFTLRPENVDQAFIRGAETSHNII WNKGLKFNFNYTYQDARNYSDSPALNGKYLPLRSKSQGSALLAFFNETSEIGIEYQYIGANFRDRTNEYLGFLPARQFWN LYIQYSAYKNKETGNELIFGFEVRNVTDKRVEDLVGYPLPGRSYYLTGSYRF >Mature_692_residues MVSKFNLFLCMGFLLGPILLYGQETPKKEPETIEIKANVQSSSQNSNFSKNPTGFQKEIHLDSANTRYTSLPDILNREAG VRIRQYGGLGSYSTLSLRGTNPNQSKIYWNGVPINNSFGGEINLADLPFDNLEKIEIYKSGTPAGFSGSAIGGSINLVSK TKFEKPITRVNLMGGSFKTAKTTVTHMDQFTNGSYFVQALHETSDQNFTYLNNKGTVLFNTYDDTIDERKNAQFRKTGFT GNLSFDIGKTKINLLNDYIHRKQGLPGPGNRQTTSVGRVFSKLSSAITTETNEFIFTNLTLETKTYGNFSKDDLFDPKSE FSFGTPNAYTKTNQYGFQLSPTLYLLDYYQVLRASVLTEQEFFTRYEKRANHETERKEPKKRRDTQSFTFQDEIRLFSNR LFLVPQVRFERYTDRFGKDETSIRNQLLDPLTDVFTVRQNFTNPSFGLKIIWIKKENWEWGTLANISKDFRIPSFIELFG ERGSIVGNTKLRPEQSRNGDFGFYLHTKIGSGWKIQSDVSYFQKRIYDMILFLPNSQFTLRPENVDQAFIRGAETSHNII WNKGLKFNFNYTYQDARNYSDSPALNGKYLPLRSKSQGSALLAFFNETSEIGIEYQYIGANFRDRTNEYLGFLPARQFWN LYIQYSAYKNKETGNELIFGFEVRNVTDKRVEDLVGYPLPGRSYYLTGSYRF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: COG4771
COG function: function code P; Outer membrane receptor for ferrienterochelin and colicins
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=259, Percent_Identity=27.7992277992278, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 79520; Mature: 79520
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSKFNLFLCMGFLLGPILLYGQETPKKEPETIEIKANVQSSSQNSNFSKNPTGFQKEIH CCCCHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEE LDSANTRYTSLPDILNREAGVRIRQYGGLGSYSTLSLRGTNPNQSKIYWNGVPINNSFGG ECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEEEEEECCCCCCCEEEECCEECCCCCCC EINLADLPFDNLEKIEIYKSGTPAGFSGSAIGGSINLVSKTKFEKPITRVNLMGGSFKTA EEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCH KTTVTHMDQFTNGSYFVQALHETSDQNFTYLNNKGTVLFNTYDDTIDERKNAQFRKTGFT HHHHHHHHHCCCCHHEEHHHHHCCCCCEEEECCCCEEEEECCCCHHHHHCCCCEEECCCC GNLSFDIGKTKINLLNDYIHRKQGLPGPGNRQTTSVGRVFSKLSSAITTETNEFIFTNLT CEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEE LETKTYGNFSKDDLFDPKSEFSFGTPNAYTKTNQYGFQLSPTLYLLDYYQVLRASVLTEQ EEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHH EFFTRYEKRANHETERKEPKKRRDTQSFTFQDEIRLFSNRLFLVPQVRFERYTDRFGKDE HHHHHHHHHCCCCHHHHCHHHHCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCCH TSIRNQLLDPLTDVFTVRQNFTNPSFGLKIIWIKKENWEWGTLANISKDFRIPSFIELFG HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHC ERGSIVGNTKLRPEQSRNGDFGFYLHTKIGSGWKIQSDVSYFQKRIYDMILFLPNSQFTL CCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCEEHHHHHHHHHHHHHEEEECCCCCEEE RPENVDQAFIRGAETSHNIIWNKGLKFNFNYTYQDARNYSDSPALNGKYLPLRSKSQGSA CCCCCCHHHHCCCCCCCCEEEECCEEEEEEEEEHHHCCCCCCCCCCCEEEECCCCCCCCE LLAFFNETSEIGIEYQYIGANFRDRTNEYLGFLPARQFWNLYIQYSAYKNKETGNELIFG EEEEECCCCCCCEEEEEECCCCHHCCHHHHHCCCCCCEEEEEEEEEECCCCCCCCEEEEE FEVRNVTDKRVEDLVGYPLPGRSYYLTGSYRF EEECCCCHHHHHHHHCCCCCCCEEEEEEEECC >Mature Secondary Structure MVSKFNLFLCMGFLLGPILLYGQETPKKEPETIEIKANVQSSSQNSNFSKNPTGFQKEIH CCCCHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEE LDSANTRYTSLPDILNREAGVRIRQYGGLGSYSTLSLRGTNPNQSKIYWNGVPINNSFGG ECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEEEEEECCCCCCCEEEECCEECCCCCCC EINLADLPFDNLEKIEIYKSGTPAGFSGSAIGGSINLVSKTKFEKPITRVNLMGGSFKTA EEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCH KTTVTHMDQFTNGSYFVQALHETSDQNFTYLNNKGTVLFNTYDDTIDERKNAQFRKTGFT HHHHHHHHHCCCCHHEEHHHHHCCCCCEEEECCCCEEEEECCCCHHHHHCCCCEEECCCC GNLSFDIGKTKINLLNDYIHRKQGLPGPGNRQTTSVGRVFSKLSSAITTETNEFIFTNLT CEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEE LETKTYGNFSKDDLFDPKSEFSFGTPNAYTKTNQYGFQLSPTLYLLDYYQVLRASVLTEQ EEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHH EFFTRYEKRANHETERKEPKKRRDTQSFTFQDEIRLFSNRLFLVPQVRFERYTDRFGKDE HHHHHHHHHCCCCHHHHCHHHHCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCCH TSIRNQLLDPLTDVFTVRQNFTNPSFGLKIIWIKKENWEWGTLANISKDFRIPSFIELFG HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHC ERGSIVGNTKLRPEQSRNGDFGFYLHTKIGSGWKIQSDVSYFQKRIYDMILFLPNSQFTL CCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCEEHHHHHHHHHHHHHEEEECCCCCEEE RPENVDQAFIRGAETSHNIIWNKGLKFNFNYTYQDARNYSDSPALNGKYLPLRSKSQGSA CCCCCCHHHHCCCCCCCCEEEECCEEEEEEEEEHHHCCCCCCCCCCCEEEECCCCCCCCE LLAFFNETSEIGIEYQYIGANFRDRTNEYLGFLPARQFWNLYIQYSAYKNKETGNELIFG EEEEECCCCCCCEEEEEECCCCHHCCHHHHHCCCCCCEEEEEEEEEECCCCCCCCEEEEE FEVRNVTDKRVEDLVGYPLPGRSYYLTGSYRF EEECCCCHHHHHHHHCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA