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The map label for this gene is yqhC [H]

Identifier: 183219554

GI number: 183219554

Start: 127573

End: 128460

Strand: Direct

Name: yqhC [H]

Synonym: LEPBI_I0127

Alternate gene names: 183219554

Gene position: 127573-128460 (Clockwise)

Preceding gene: 183219552

Following gene: 183219555

Centisome position: 3.54

GC content: 41.33

Gene sequence:

>888_bases
ATGCAAAAGTTGGTGAATGAGATCGCTGAATTATGTTGTAGTGCGACCACCAAACCTACATTAACGGGAATCCCACGTGT
GTTAATGATCCAAGGTGAAGTTCCGGAACACCAACTTGCTGCTGTTTATGAACCTTTAGTTGGTCTTGTTGTCCAAGGTG
GCAAAACGATTTCAATTGGCAGACAAATGGTTCCTATGGAAGGTCCATCTTATTTTGTGATCCCAACAGAAATGCCAGCC
ACTGGTTCTGTAAGACAGGCAAAGAATGGTCGTCCCTATTTATCTGTAGCACTCCAATTGGATCAAAAAGTGTTACTCGA
TTTGTTAAAAGATACACCAAACACAGTTGCTTTTAAAAATGATACGGATGAGTTTTCTGCCTGTCCGGCTACTCCAGAAT
TTTTGGAGGTTTGGTTACGAATGTTACGGTTGATGAAAACGCCAGAACACATTGCCGCATTAGCACCAGCTTATGAAAGG
GAAATTTTATACCATGTATTGATTGGCCCAGAAGGATGGCGTCTTCGGCAATTGTTTCAATCCCACCAAAAAGGTTCGAG
CATTCACCAATCGATCCAGTGGGTGAGACAACACTTTACTCATTCTTTTGAAATAGAGGATCTTGCAAACAAAGCTTGTA
TGGGAATCACTACGTTTCATCGACAATTCAAATCCATTACCGGACTTAGTCCCATCCAATTCCAAAAACAGCTAAGACTT
CTCGAAGCACGCAAACTTCTAACTTATAGTGGTTATTCCGTCACCGATGCAGCGTTAGATGTTGGTTATGAAAGTACCTC
ACAATTCAACCGCGAATACACTCGGTTTTTTGGTGCCTCTCCTGCACGTGACACAAAAAGATTAAAAAATGATTCTAATT
TCCATTGA

Upstream 100 bases:

>100_bases
ACTACCACATTGTATTTTTTTGATAATAAAATCGTTATAAAAAATGCATTTATTCTTTTTTTAAAGTGCTTAAAAGTATT
ATTTATGTTATCCTGGGAAT

Downstream 100 bases:

>100_bases
AAATGGAAAAAATAAGTACAAATTCGCATCAAAAAGATTGAAGAAAAGTTATCGTTTCGTATGGTTCGCATTAGGTGTTT
ATAAGCATGCAAAATTTTGC

Product: putative HTH-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MQKLVNEIAELCCSATTKPTLTGIPRVLMIQGEVPEHQLAAVYEPLVGLVVQGGKTISIGRQMVPMEGPSYFVIPTEMPA
TGSVRQAKNGRPYLSVALQLDQKVLLDLLKDTPNTVAFKNDTDEFSACPATPEFLEVWLRMLRLMKTPEHIAALAPAYER
EILYHVLIGPEGWRLRQLFQSHQKGSSIHQSIQWVRQHFTHSFEIEDLANKACMGITTFHRQFKSITGLSPIQFQKQLRL
LEARKLLTYSGYSVTDAALDVGYESTSQFNREYTRFFGASPARDTKRLKNDSNFH

Sequences:

>Translated_295_residues
MQKLVNEIAELCCSATTKPTLTGIPRVLMIQGEVPEHQLAAVYEPLVGLVVQGGKTISIGRQMVPMEGPSYFVIPTEMPA
TGSVRQAKNGRPYLSVALQLDQKVLLDLLKDTPNTVAFKNDTDEFSACPATPEFLEVWLRMLRLMKTPEHIAALAPAYER
EILYHVLIGPEGWRLRQLFQSHQKGSSIHQSIQWVRQHFTHSFEIEDLANKACMGITTFHRQFKSITGLSPIQFQKQLRL
LEARKLLTYSGYSVTDAALDVGYESTSQFNREYTRFFGASPARDTKRLKNDSNFH
>Mature_295_residues
MQKLVNEIAELCCSATTKPTLTGIPRVLMIQGEVPEHQLAAVYEPLVGLVVQGGKTISIGRQMVPMEGPSYFVIPTEMPA
TGSVRQAKNGRPYLSVALQLDQKVLLDLLKDTPNTVAFKNDTDEFSACPATPEFLEVWLRMLRLMKTPEHIAALAPAYER
EILYHVLIGPEGWRLRQLFQSHQKGSSIHQSIQWVRQHFTHSFEIEDLANKACMGITTFHRQFKSITGLSPIQFQKQLRL
LEARKLLTYSGYSVTDAALDVGYESTSQFNREYTRFFGASPARDTKRLKNDSNFH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=273, Percent_Identity=31.5018315018315, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1790339, Length=99, Percent_Identity=34.3434343434343, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33326; Mature: 33326

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKLVNEIAELCCSATTKPTLTGIPRVLMIQGEVPEHQLAAVYEPLVGLVVQGGKTISIG
CHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEECC
RQMVPMEGPSYFVIPTEMPATGSVRQAKNGRPYLSVALQLDQKVLLDLLKDTPNTVAFKN
CEECCCCCCCEEEEECCCCCCCCHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCEEEECC
DTDEFSACPATPEFLEVWLRMLRLMKTPEHIAALAPAYEREILYHVLIGPEGWRLRQLFQ
CCCHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHEEEEEECCCCHHHHHHHH
SHQKGSSIHQSIQWVRQHFTHSFEIEDLANKACMGITTFHRQFKSITGLSPIQFQKQLRL
HHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LEARKLLTYSGYSVTDAALDVGYESTSQFNREYTRFFGASPARDTKRLKNDSNFH
HHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCC
>Mature Secondary Structure
MQKLVNEIAELCCSATTKPTLTGIPRVLMIQGEVPEHQLAAVYEPLVGLVVQGGKTISIG
CHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEECC
RQMVPMEGPSYFVIPTEMPATGSVRQAKNGRPYLSVALQLDQKVLLDLLKDTPNTVAFKN
CEECCCCCCCEEEEECCCCCCCCHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCEEEECC
DTDEFSACPATPEFLEVWLRMLRLMKTPEHIAALAPAYEREILYHVLIGPEGWRLRQLFQ
CCCHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHEEEEEECCCCHHHHHHHH
SHQKGSSIHQSIQWVRQHFTHSFEIEDLANKACMGITTFHRQFKSITGLSPIQFQKQLRL
HHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LEARKLLTYSGYSVTDAALDVGYESTSQFNREYTRFFGASPARDTKRLKNDSNFH
HHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]