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The map label for this gene is yocS [H]

Identifier: 183219541

GI number: 183219541

Start: 117653

End: 118546

Strand: Reverse

Name: yocS [H]

Synonym: LEPBI_I0114

Alternate gene names: 183219541

Gene position: 118546-117653 (Counterclockwise)

Preceding gene: 183219542

Following gene: 183219540

Centisome position: 3.29

GC content: 38.26

Gene sequence:

>894_bases
ATGAATTATAACAATGATTATCAGATCGTATTAGGTTTGGTGTTGGCACTGATGATTTTTGGTGTGGCATTGGAACTTCG
TTTCATTGCGTTTAAGGCCGTCTTACAAAGACCTGTTGCTGCAATGTCTGGGCTCATTGGGCAAGTGATTATTTTACCTT
GGATGACTTTACTCATCACACTCATGTTAGACCTTCCTGCAGGGATCGAACTAGGGATGTTATTAGTTGCGGCAAGCCCT
GGTGGAAACTTATCCAATATCATCACACATTTAGGTAAAGGGAATACTGCCCTCTCCGTCAGTATGACAGCCGTATCTAG
TTTATTTGCGATCATTACGTTACCGCTTAACTTTACATTAACGGCAAATTTAAACCCAGTCACTCATGCGATGATCTCTG
GATCAGGAGAATTACGAATTGATAGTTTGATGATCATCAAAAGTATGATCGTTTTACTTCTCGTTCCCCTTCTCCTCGGA
ATGATTCTTGGAAATTTTTTCACCAAATTTGCTCATAAAATCACTCCATTTTTTAAAAGAATTTCTTCATTTGCTTTTTT
GGTTTTTCTCATTGTGGCCGTTGGTGGCAATTGGAAAATCTTTTTGGAGAATCTTGGATTTGTTTTTATCATTGTTGTTT
TTCATAATTTAATTGCTTTAATCATCGGAAATTTAATCGCCCGATTGTTTCGACAAAATGAATCAAACAAACGTGCCATC
ACAATTGAAGTTGGAATGCAGAACTCAGGACTTGCTTTAGGACTCATACTCACTCAGTTTCAAGCGGAACCAAACATGGC
TTTGGTGGCTGCTTTTTGGGGGATTTGGCATATCATTTCTGGATTGATCTTGGTGATGTATTGGAAAAATCACCCACCAG
TAGAAGGAAATTAA

Upstream 100 bases:

>100_bases
AATCTCTTCTTTCCTTCATAGAATATAACTCCGATGAACAATCATTCACGAGACAACTGGTTTATGTTTGGTTATCATGA
TACTGTAGGAAGAATTAATA

Downstream 100 bases:

>100_bases
TTTGAAAGTTTTAGTCACTGGTGGTGCAGGTTACATTGGATCCACACTCATCCAATCTTTATTAGAAATCCATCCCGATT
GGTCCATCTTGGCAACGGAC

Product: sodium/bile acid cotransporter family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MNYNNDYQIVLGLVLALMIFGVALELRFIAFKAVLQRPVAAMSGLIGQVIILPWMTLLITLMLDLPAGIELGMLLVAASP
GGNLSNIITHLGKGNTALSVSMTAVSSLFAIITLPLNFTLTANLNPVTHAMISGSGELRIDSLMIIKSMIVLLLVPLLLG
MILGNFFTKFAHKITPFFKRISSFAFLVFLIVAVGGNWKIFLENLGFVFIIVVFHNLIALIIGNLIARLFRQNESNKRAI
TIEVGMQNSGLALGLILTQFQAEPNMALVAAFWGIWHIISGLILVMYWKNHPPVEGN

Sequences:

>Translated_297_residues
MNYNNDYQIVLGLVLALMIFGVALELRFIAFKAVLQRPVAAMSGLIGQVIILPWMTLLITLMLDLPAGIELGMLLVAASP
GGNLSNIITHLGKGNTALSVSMTAVSSLFAIITLPLNFTLTANLNPVTHAMISGSGELRIDSLMIIKSMIVLLLVPLLLG
MILGNFFTKFAHKITPFFKRISSFAFLVFLIVAVGGNWKIFLENLGFVFIIVVFHNLIALIIGNLIARLFRQNESNKRAI
TIEVGMQNSGLALGLILTQFQAEPNMALVAAFWGIWHIISGLILVMYWKNHPPVEGN
>Mature_297_residues
MNYNNDYQIVLGLVLALMIFGVALELRFIAFKAVLQRPVAAMSGLIGQVIILPWMTLLITLMLDLPAGIELGMLLVAASP
GGNLSNIITHLGKGNTALSVSMTAVSSLFAIITLPLNFTLTANLNPVTHAMISGSGELRIDSLMIIKSMIVLLLVPLLLG
MILGNFFTKFAHKITPFFKRISSFAFLVFLIVAVGGNWKIFLENLGFVFIIVVFHNLIALIIGNLIARLFRQNESNKRAI
TIEVGMQNSGLALGLILTQFQAEPNMALVAAFWGIWHIISGLILVMYWKNHPPVEGN

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI215422370, Length=252, Percent_Identity=26.984126984127, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI9790143, Length=252, Percent_Identity=26.984126984127, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI4506973, Length=273, Percent_Identity=27.8388278388278, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI215422368, Length=252, Percent_Identity=26.984126984127, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI37537552, Length=301, Percent_Identity=22.9235880398671, Blast_Score=66, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 32455; Mature: 32455

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYNNDYQIVLGLVLALMIFGVALELRFIAFKAVLQRPVAAMSGLIGQVIILPWMTLLIT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMLDLPAGIELGMLLVAASPGGNLSNIITHLGKGNTALSVSMTAVSSLFAIITLPLNFTL
HHHHCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCEEE
TANLNPVTHAMISGSGELRIDSLMIIKSMIVLLLVPLLLGMILGNFFTKFAHKITPFFKR
EECCCHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISSFAFLVFLIVAVGGNWKIFLENLGFVFIIVVFHNLIALIIGNLIARLFRQNESNKRAI
HHHHHHHHHHHHHHCCCCEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
TIEVGMQNSGLALGLILTQFQAEPNMALVAAFWGIWHIISGLILVMYWKNHPPVEGN
EEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNYNNDYQIVLGLVLALMIFGVALELRFIAFKAVLQRPVAAMSGLIGQVIILPWMTLLIT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMLDLPAGIELGMLLVAASPGGNLSNIITHLGKGNTALSVSMTAVSSLFAIITLPLNFTL
HHHHCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCEEE
TANLNPVTHAMISGSGELRIDSLMIIKSMIVLLLVPLLLGMILGNFFTKFAHKITPFFKR
EECCCHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISSFAFLVFLIVAVGGNWKIFLENLGFVFIIVVFHNLIALIIGNLIARLFRQNESNKRAI
HHHHHHHHHHHHHHCCCCEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
TIEVGMQNSGLALGLILTQFQAEPNMALVAAFWGIWHIISGLILVMYWKNHPPVEGN
EEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]