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The map label for this gene is yocS [H]

Identifier: 183219530

GI number: 183219530

Start: 104337

End: 105215

Strand: Direct

Name: yocS [H]

Synonym: LEPBI_I0103

Alternate gene names: 183219530

Gene position: 104337-105215 (Clockwise)

Preceding gene: 183219529

Following gene: 183219531

Centisome position: 2.9

GC content: 34.58

Gene sequence:

>879_bases
ATGTTAACGCGTACAGAAGAGATCTTATTTGCTGCGATGGTATTTTTTTTAATGGTGGCGATGGGAAGTACACTTACCAT
TGAGAATTTTAAAAAGGCAGTGCATTCTAAAAAACCTCTGATTGTTGGAGTCATATCTCAATTTGGTTTTATGCCACTCA
TAGCTTTTGGATTAGCAAAAAGTTTAGATTTATCACCTTTGTTTTCTATTGGACTCATTTTAGTTGGTTGTACACCAGGT
GGGACAACTTCCAATTTGCTCACCTATTATGCGAAAGGTGATGTTGCTTTGAGTATCAGTATGACAATCACATCTACAAT
ACTTGCAACCGTGATGATGCCATTTTTGTTTTGGTTGTATTGCTCTGGTTTTGCAGAAAATGACATTCAAATTCCATATA
AAAGTATTGTCGGATCAATTTTCATATTAATCATTCCTGTTTTGATCGGGATTCAGATCAGATCGTATAATACAAGAATG
GCGCTAAAAATTGAAAAAATAGGCAGTTATCTAGGAATATTAATGATTCTCTTTTTGTTAGGTGTTATGGTTCCCAAGAA
CTTAGATATCCTACAAATCACAACTTGGCAAATGTATTTGGCTGCGATCCTCATAACGGTGCTCGGGTACAGTTTTGGAT
ATATTTTTAGCAGAATCTTAAATTTATCTGAAAAACAAGCACGTACTGTATCCTTAGAGACGGGGATTCAAAATGGACCA
TTGACGATAGCGGTCATTCTACTTAGTTTTTCCAATTCAATCAGTAATGAAATTCTTTGGATGCCACTTTTATATGCATT
GTTTGTGCCCATTACCTCTTCAATCGCTACTTACTATTTTTATTTAAAATCAAAACAAGAATCAAAAGGACAAGTTTGA

Upstream 100 bases:

>100_bases
GGTTCCATTTTTCCAACAAGTTTAGGTGTAAATCCAAGTTTTACAATCTATGCCATAGCATCAAAATTAGCCACAAAATT
GGCCAAGGAATTCAAATAAG

Downstream 100 bases:

>100_bases
ATGAATTTCTATTTTTCAGAAGAACAAAACAAATTAAGGGATGCCGTTGCTGCATATTCTAAAATCGCAGGAAGTGACCC
GCAAAGAGACATCGAAGAAA

Product: sodium/bile acid cotransporter family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MLTRTEEILFAAMVFFLMVAMGSTLTIENFKKAVHSKKPLIVGVISQFGFMPLIAFGLAKSLDLSPLFSIGLILVGCTPG
GTTSNLLTYYAKGDVALSISMTITSTILATVMMPFLFWLYCSGFAENDIQIPYKSIVGSIFILIIPVLIGIQIRSYNTRM
ALKIEKIGSYLGILMILFLLGVMVPKNLDILQITTWQMYLAAILITVLGYSFGYIFSRILNLSEKQARTVSLETGIQNGP
LTIAVILLSFSNSISNEILWMPLLYALFVPITSSIATYYFYLKSKQESKGQV

Sequences:

>Translated_292_residues
MLTRTEEILFAAMVFFLMVAMGSTLTIENFKKAVHSKKPLIVGVISQFGFMPLIAFGLAKSLDLSPLFSIGLILVGCTPG
GTTSNLLTYYAKGDVALSISMTITSTILATVMMPFLFWLYCSGFAENDIQIPYKSIVGSIFILIIPVLIGIQIRSYNTRM
ALKIEKIGSYLGILMILFLLGVMVPKNLDILQITTWQMYLAAILITVLGYSFGYIFSRILNLSEKQARTVSLETGIQNGP
LTIAVILLSFSNSISNEILWMPLLYALFVPITSSIATYYFYLKSKQESKGQV
>Mature_292_residues
MLTRTEEILFAAMVFFLMVAMGSTLTIENFKKAVHSKKPLIVGVISQFGFMPLIAFGLAKSLDLSPLFSIGLILVGCTPG
GTTSNLLTYYAKGDVALSISMTITSTILATVMMPFLFWLYCSGFAENDIQIPYKSIVGSIFILIIPVLIGIQIRSYNTRM
ALKIEKIGSYLGILMILFLLGVMVPKNLDILQITTWQMYLAAILITVLGYSFGYIFSRILNLSEKQARTVSLETGIQNGP
LTIAVILLSFSNSISNEILWMPLLYALFVPITSSIATYYFYLKSKQESKGQV

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=285, Percent_Identity=34.7368421052632, Blast_Score=154, Evalue=8e-38,
Organism=Homo sapiens, GI4506971, Length=262, Percent_Identity=32.824427480916, Blast_Score=141, Evalue=9e-34,
Organism=Homo sapiens, GI37537552, Length=288, Percent_Identity=31.5972222222222, Blast_Score=128, Evalue=5e-30,
Organism=Homo sapiens, GI24308414, Length=274, Percent_Identity=33.2116788321168, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI58219066, Length=239, Percent_Identity=30.1255230125523, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI215422368, Length=254, Percent_Identity=29.1338582677165, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI215422370, Length=254, Percent_Identity=29.1338582677165, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI9790143, Length=254, Percent_Identity=29.1338582677165, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24642541, Length=233, Percent_Identity=26.6094420600858, Blast_Score=85, Evalue=7e-17,
Organism=Drosophila melanogaster, GI18859699, Length=276, Percent_Identity=23.1884057971014, Blast_Score=75, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 32291; Mature: 32291

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTRTEEILFAAMVFFLMVAMGSTLTIENFKKAVHSKKPLIVGVISQFGFMPLIAFGLAK
CCCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHH
SLDLSPLFSIGLILVGCTPGGTTSNLLTYYAKGDVALSISMTITSTILATVMMPFLFWLY
CCCCCHHHHHHEEEEECCCCCCCHHHEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHH
CSGFAENDIQIPYKSIVGSIFILIIPVLIGIQIRSYNTRMALKIEKIGSYLGILMILFLL
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCEEEEEHHHHHHHHHHHHHHHHH
GVMVPKNLDILQITTWQMYLAAILITVLGYSFGYIFSRILNLSEKQARTVSLETGIQNGP
HHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHEEEHHCCCCCCC
LTIAVILLSFSNSISNEILWMPLLYALFVPITSSIATYYFYLKSKQESKGQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCC
>Mature Secondary Structure
MLTRTEEILFAAMVFFLMVAMGSTLTIENFKKAVHSKKPLIVGVISQFGFMPLIAFGLAK
CCCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHH
SLDLSPLFSIGLILVGCTPGGTTSNLLTYYAKGDVALSISMTITSTILATVMMPFLFWLY
CCCCCHHHHHHEEEEECCCCCCCHHHEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHH
CSGFAENDIQIPYKSIVGSIFILIIPVLIGIQIRSYNTRMALKIEKIGSYLGILMILFLL
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCEEEEEHHHHHHHHHHHHHHHHH
GVMVPKNLDILQITTWQMYLAAILITVLGYSFGYIFSRILNLSEKQARTVSLETGIQNGP
HHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHEEEHHCCCCCCC
LTIAVILLSFSNSISNEILWMPLLYALFVPITSSIATYYFYLKSKQESKGQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]