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The map label for this gene is 183219496

Identifier: 183219496

GI number: 183219496

Start: 68630

End: 70216

Strand: Reverse

Name: 183219496

Synonym: LEPBI_I0069

Alternate gene names: NA

Gene position: 70216-68630 (Counterclockwise)

Preceding gene: 183219497

Following gene: 183219495

Centisome position: 1.95

GC content: 42.53

Gene sequence:

>1587_bases
ATGGAAACAAAGTACGATGCCATCATCATTGGATCGGGAATCGGCGGGCTCACTGCCGCTTCCATTTTGTCACAAGTCGC
TAACAAAAAAGTTTTAGTATTAGAACGTCATTTTAAGTTAGGTGGCTTTACGCACACATTCAAACGATTGGGAAAATTTG
AATGGGATGTGGGTATCCATTACATTGGAGATTTGGCAGAAGGTTCGATGTTACGAACCTTATTTGATTCGATTACGAAA
CGTGGTGTCCAATGGCAAAAAATGGAAGAACCATTTGAAGTCTTTGATTATCCAGAGTTTAGTTTTCCCGTTTATGGGGA
AAAAGAACGATTCCGTAACGATTTAAAATCCAAATTCCCAAATGAATCCGTCGCCATCGACCAATACTTCAAAGATGTAG
AAACTTTCACTCAGTGGTTTGGTAGGCATTTCACACTGAAAGCTCTTCCAGCTTTTTTCGAAAAAGCAGCCAAACTACTT
GGGCTTGGGCATATCCCTACTCCTTACATCACCACAAAAGAATACATGGACACACATTTCCAAGATGAGAGTCTCAAGGC
ACTACTTTGTTCTCAATGGGGGGATTATGGACTGCCTCCCAAAGATTCATCGTTTGCCATCCATTCGATGATTGTCGCAC
ATTACTTTAACGGAGGTTACTTTCCGATCGGTGGATCTTCTAAAATTGTGGATTCGATTGAACCCATCGTCGAAAAAAAT
GGTGGGGCAATGAAGATCCTCCATACAGTCAAAGAAATCATTCTGGAAGGAGACAAGGCCATTGGTGTGAAAGTAGATGT
CCAAAAAGGAAAAACCATTTCAGAACAAAGTTTTTTTGCGGATGTGATCATCTCGGATGCCGGTGCCTACACCACATACA
ACAAACTATTGCCAAAGGAATTTTCAAAAGATTTCCAAACACCATTGGAATCACTTAGCACCCAAGGAACAACTTCCATC
ACACTTTATATAGGATTCAAAGAGTCTCCTACTAAACTTGGATTTCATGGTGAAAACCATTGGATTTTCCCTAGAGGCAA
CCATGACGACAGTTATGCGAAACGAAATGACTTAATCCATGGAAAACCACCCATGATGTATTTGTCCTTTCCCTCTTTAA
AAAACCCAGAAGCCGAGGGCCACACAGCCGAAGCCATTAGTTTTGCCGATTATGCAAATTTTGCGAAATGGAAAGACGAA
CCCTGGAAAAAAAGGGGAGAGGATTACAACCAATTGAAGGCAACGATCACAGAAGGAATGTTACAATTTTTGGAAACACG
ATTCCCCGGATTCCGAGATCTCATCGAGTTTACCGAACTTTCCACACCGATCACAACCGAAACCTTTACGGGCCACAAAG
AAGGTTCCATTTACGGACTTTCCTGTACACCAGAACGCTTCCGTCAAGAATGGTTAGGAGTAAGGACGACTGTCAAAAAC
CTTTATCTCACGGGTGCAGATGCCTGTTCTCCAGGCGTGGCTGGGGCTCTCATGGGTGGTGTAGCAACATCATCTGTTGT
ATTAGGTCTCACAGGGACTCTACGTCTCATGAAGGAACTTTTCCAAAAGAGCCAAGAAACCGTTTGA

Upstream 100 bases:

>100_bases
AATTCACAAAAGAATCCTCAACCAAAACATATGCTGATGTTCCACTGAAAGCAAATGAAGTGGTCACTTTAGAATACACG
GTTGAAACCAAGTACTAAAC

Downstream 100 bases:

>100_bases
CAAATGGTTTAAAGTTTGATAGTTTGATATTAAACCAATGGGAACTAAATTCAAAGGATCTAAAAAAGAAGTACAAGCTC
TAGACTCGTTTATCAAACTC

Product: putative dehydrogenase-related protein

Products: NA

Alternate protein names: All-Trans-Retinol; Carotenoid Isomerase; Phytoene Dehydrogenase; Carotene Isomerase; Amine Oxidase; Phytoene Dehydrogenase-Related Protein; Phytoene Dehydrogenase-Like Protein; Phytoene Dehydrogenase And Related Proteins; Phytoene Dehydrogenase And Related Protein; Phytoene Dehydrogenase Domain Protein; Carotenoid Cis-Trans Isomerase; Dehydrogenase-Related Protein; Phytoene Dehydrogenase And Related Proteins-Like; Phytoene Desaturase; Amine Oxidase Flavin-Containing; Zeta-Phytoene Desaturase; Bacterial-Type Phytoene Dehydrogenase; Phytoene Dehydrogenase Or

Number of amino acids: Translated: 528; Mature: 528

Protein sequence:

>528_residues
METKYDAIIIGSGIGGLTAASILSQVANKKVLVLERHFKLGGFTHTFKRLGKFEWDVGIHYIGDLAEGSMLRTLFDSITK
RGVQWQKMEEPFEVFDYPEFSFPVYGEKERFRNDLKSKFPNESVAIDQYFKDVETFTQWFGRHFTLKALPAFFEKAAKLL
GLGHIPTPYITTKEYMDTHFQDESLKALLCSQWGDYGLPPKDSSFAIHSMIVAHYFNGGYFPIGGSSKIVDSIEPIVEKN
GGAMKILHTVKEIILEGDKAIGVKVDVQKGKTISEQSFFADVIISDAGAYTTYNKLLPKEFSKDFQTPLESLSTQGTTSI
TLYIGFKESPTKLGFHGENHWIFPRGNHDDSYAKRNDLIHGKPPMMYLSFPSLKNPEAEGHTAEAISFADYANFAKWKDE
PWKKRGEDYNQLKATITEGMLQFLETRFPGFRDLIEFTELSTPITTETFTGHKEGSIYGLSCTPERFRQEWLGVRTTVKN
LYLTGADACSPGVAGALMGGVATSSVVLGLTGTLRLMKELFQKSQETV

Sequences:

>Translated_528_residues
METKYDAIIIGSGIGGLTAASILSQVANKKVLVLERHFKLGGFTHTFKRLGKFEWDVGIHYIGDLAEGSMLRTLFDSITK
RGVQWQKMEEPFEVFDYPEFSFPVYGEKERFRNDLKSKFPNESVAIDQYFKDVETFTQWFGRHFTLKALPAFFEKAAKLL
GLGHIPTPYITTKEYMDTHFQDESLKALLCSQWGDYGLPPKDSSFAIHSMIVAHYFNGGYFPIGGSSKIVDSIEPIVEKN
GGAMKILHTVKEIILEGDKAIGVKVDVQKGKTISEQSFFADVIISDAGAYTTYNKLLPKEFSKDFQTPLESLSTQGTTSI
TLYIGFKESPTKLGFHGENHWIFPRGNHDDSYAKRNDLIHGKPPMMYLSFPSLKNPEAEGHTAEAISFADYANFAKWKDE
PWKKRGEDYNQLKATITEGMLQFLETRFPGFRDLIEFTELSTPITTETFTGHKEGSIYGLSCTPERFRQEWLGVRTTVKN
LYLTGADACSPGVAGALMGGVATSSVVLGLTGTLRLMKELFQKSQETV
>Mature_528_residues
METKYDAIIIGSGIGGLTAASILSQVANKKVLVLERHFKLGGFTHTFKRLGKFEWDVGIHYIGDLAEGSMLRTLFDSITK
RGVQWQKMEEPFEVFDYPEFSFPVYGEKERFRNDLKSKFPNESVAIDQYFKDVETFTQWFGRHFTLKALPAFFEKAAKLL
GLGHIPTPYITTKEYMDTHFQDESLKALLCSQWGDYGLPPKDSSFAIHSMIVAHYFNGGYFPIGGSSKIVDSIEPIVEKN
GGAMKILHTVKEIILEGDKAIGVKVDVQKGKTISEQSFFADVIISDAGAYTTYNKLLPKEFSKDFQTPLESLSTQGTTSI
TLYIGFKESPTKLGFHGENHWIFPRGNHDDSYAKRNDLIHGKPPMMYLSFPSLKNPEAEGHTAEAISFADYANFAKWKDE
PWKKRGEDYNQLKATITEGMLQFLETRFPGFRDLIEFTELSTPITTETFTGHKEGSIYGLSCTPERFRQEWLGVRTTVKN
LYLTGADACSPGVAGALMGGVATSSVVLGLTGTLRLMKELFQKSQETV

Specific function: Unknown

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI203098013, Length=529, Percent_Identity=29.8676748582231, Blast_Score=221, Evalue=2e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59254; Mature: 59254

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METKYDAIIIGSGIGGLTAASILSQVANKKVLVLERHFKLGGFTHTFKRLGKFEWDVGIH
CCCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHCCCEECCCHH
YIGDLAEGSMLRTLFDSITKRGVQWQKMEEPFEVFDYPEFSFPVYGEKERFRNDLKSKFP
HHCCCCCCHHHHHHHHHHHHCCCCHHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHCC
NESVAIDQYFKDVETFTQWFGRHFTLKALPAFFEKAAKLLGLGHIPTPYITTKEYMDTHF
CCCCHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCC
QDESLKALLCSQWGDYGLPPKDSSFAIHSMIVAHYFNGGYFPIGGSSKIVDSIEPIVEKN
CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHCC
GGAMKILHTVKEIILEGDKAIGVKVDVQKGKTISEQSFFADVIISDAGAYTTYNKLLPKE
CCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHEECCCCHHHHHHHHHHH
FSKDFQTPLESLSTQGTTSITLYIGFKESPTKLGFHGENHWIFPRGNHDDSYAKRNDLIH
HHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHCCCCC
GKPPMMYLSFPSLKNPEAEGHTAEAISFADYANFAKWKDEPWKKRGEDYNQLKATITEGM
CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHH
LQFLETRFPGFRDLIEFTELSTPITTETFTGHKEGSIYGLSCTPERFRQEWLGVRTTVKN
HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHH
LYLTGADACSPGVAGALMGGVATSSVVLGLTGTLRLMKELFQKSQETV
HEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
METKYDAIIIGSGIGGLTAASILSQVANKKVLVLERHFKLGGFTHTFKRLGKFEWDVGIH
CCCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHCCCEECCCHH
YIGDLAEGSMLRTLFDSITKRGVQWQKMEEPFEVFDYPEFSFPVYGEKERFRNDLKSKFP
HHCCCCCCHHHHHHHHHHHHCCCCHHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHCC
NESVAIDQYFKDVETFTQWFGRHFTLKALPAFFEKAAKLLGLGHIPTPYITTKEYMDTHF
CCCCHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCC
QDESLKALLCSQWGDYGLPPKDSSFAIHSMIVAHYFNGGYFPIGGSSKIVDSIEPIVEKN
CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHCC
GGAMKILHTVKEIILEGDKAIGVKVDVQKGKTISEQSFFADVIISDAGAYTTYNKLLPKE
CCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHEECCCCHHHHHHHHHHH
FSKDFQTPLESLSTQGTTSITLYIGFKESPTKLGFHGENHWIFPRGNHDDSYAKRNDLIH
HHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHCCCCC
GKPPMMYLSFPSLKNPEAEGHTAEAISFADYANFAKWKDEPWKKRGEDYNQLKATITEGM
CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHH
LQFLETRFPGFRDLIEFTELSTPITTETFTGHKEGSIYGLSCTPERFRQEWLGVRTTVKN
HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHH
LYLTGADACSPGVAGALMGGVATSSVVLGLTGTLRLMKELFQKSQETV
HEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA