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The map label for this gene is yciO [H]

Identifier: 183219444

GI number: 183219444

Start: 16452

End: 17084

Strand: Direct

Name: yciO [H]

Synonym: LEPBI_I0017

Alternate gene names: 183219444

Gene position: 16452-17084 (Clockwise)

Preceding gene: 183219443

Following gene: 183219446

Centisome position: 0.46

GC content: 34.76

Gene sequence:

>633_bases
ATGATCCTTTACCTCCATCCAGATAATCCAGAAGTTCGAAAACTAAAACAGATTTCCGATAGATTGAAGGATGGAGCCAT
CTATATTTTTCCTACTGACACTGTTTATGCGATAATTGCCGATGCAAATTCGAAAACTGCGGTAGAAAAAATCTATTCCA
TTAAAAAATTACCAAAAGATAAGCCACTATCTCTTTTGTGTAGGGACATTTCAATGGCCTCTCATTTTATCGAATACCTT
CCCAATTCAGCGTATCGATTCATGAAGCGCATGACTCCTGGACCATTTACATTTGTTCTCAAAGCAAATAAAAATTTACC
AAAACCATCCATTGCTCATCATAAAGACAAACAAATTGGAATCCGTATTCCCGATCATATTTATTTACAAGAATTACTCA
AAATTCATGATTCTCCACTTACATCTACTTCAGCGTTTAGTGATGATGAATTCATAATTGATATTGATGATTTAGAATCA
ATTTACGGTAATTTAGTCGATGGGATCATTGATGGAGGTATCGTAAAAATTGAATTATCAACTATGATTCAAATTCATGA
TGATTCCCTCGAACTCATCCGTGCGGGAAAAGGATATGAACTGATCCAAAATGATATCCAACACCTAGAGTGA

Upstream 100 bases:

>100_bases
TGGGTGCGGCGATTTATCTAGCATCTGATTCATCAGCGTACATGACAGGCCAATGCATTGTACTAGATGGTGGATTGACA
GCGCAGTAGAAGTCAAATTT

Downstream 100 bases:

>100_bases
ACGAATTCCCAAACCAGGAATCTTCTTTAAATGGGATTCAAATTCAAACATCCGTTTTTCTAAATGTTTTGGAAGTTTGA
TCGGCAATTCTGAATTCGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MILYLHPDNPEVRKLKQISDRLKDGAIYIFPTDTVYAIIADANSKTAVEKIYSIKKLPKDKPLSLLCRDISMASHFIEYL
PNSAYRFMKRMTPGPFTFVLKANKNLPKPSIAHHKDKQIGIRIPDHIYLQELLKIHDSPLTSTSAFSDDEFIIDIDDLES
IYGNLVDGIIDGGIVKIELSTMIQIHDDSLELIRAGKGYELIQNDIQHLE

Sequences:

>Translated_210_residues
MILYLHPDNPEVRKLKQISDRLKDGAIYIFPTDTVYAIIADANSKTAVEKIYSIKKLPKDKPLSLLCRDISMASHFIEYL
PNSAYRFMKRMTPGPFTFVLKANKNLPKPSIAHHKDKQIGIRIPDHIYLQELLKIHDSPLTSTSAFSDDEFIIDIDDLES
IYGNLVDGIIDGGIVKIELSTMIQIHDDSLELIRAGKGYELIQNDIQHLE
>Mature_210_residues
MILYLHPDNPEVRKLKQISDRLKDGAIYIFPTDTVYAIIADANSKTAVEKIYSIKKLPKDKPLSLLCRDISMASHFIEYL
PNSAYRFMKRMTPGPFTFVLKANKNLPKPSIAHHKDKQIGIRIPDHIYLQELLKIHDSPLTSTSAFSDDEFIIDIDDLES
IYGNLVDGIIDGGIVKIELSTMIQIHDDSLELIRAGKGYELIQNDIQHLE

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=190, Percent_Identity=26.3157894736842, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI87081864, Length=199, Percent_Identity=35.1758793969849, Blast_Score=126, Evalue=8e-31,
Organism=Drosophila melanogaster, GI78707274, Length=183, Percent_Identity=28.9617486338798, Blast_Score=76, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23876; Mature: 23876

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILYLHPDNPEVRKLKQISDRLKDGAIYIFPTDTVYAIIADANSKTAVEKIYSIKKLPKD
CEEEEECCCHHHHHHHHHHHHHHCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHCCCC
KPLSLLCRDISMASHFIEYLPNSAYRFMKRMTPGPFTFVLKANKNLPKPSIAHHKDKQIG
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEE
IRIPDHIYLQELLKIHDSPLTSTSAFSDDEFIIDIDDLESIYGNLVDGIIDGGIVKIELS
EECCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCEEEEEEE
TMIQIHDDSLELIRAGKGYELIQNDIQHLE
EEEEECCCCCHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MILYLHPDNPEVRKLKQISDRLKDGAIYIFPTDTVYAIIADANSKTAVEKIYSIKKLPKD
CEEEEECCCHHHHHHHHHHHHHHCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHCCCC
KPLSLLCRDISMASHFIEYLPNSAYRFMKRMTPGPFTFVLKANKNLPKPSIAHHKDKQIG
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEE
IRIPDHIYLQELLKIHDSPLTSTSAFSDDEFIIDIDDLESIYGNLVDGIIDGGIVKIELS
EECCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCEEEEEEE
TMIQIHDDSLELIRAGKGYELIQNDIQHLE
EEEEECCCCCHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]