Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is yabG [H]

Identifier: 18311199

GI number: 18311199

Start: 2538939

End: 2539826

Strand: Reverse

Name: yabG [H]

Synonym: CPE2217

Alternate gene names: 18311199

Gene position: 2539826-2538939 (Counterclockwise)

Preceding gene: 18311200

Following gene: 18311198

Centisome position: 83.78

GC content: 28.49

Gene sequence:

>888_bases
ATGAAAGTTGGAGATTTAGTAGTAAGAAAATCATATAGTAAGGATATAACTTTTAAAATTATAGATATTAAAGAAAATGA
GGAAGGAATAACTTATATTTTAAAGGGGCTTCATATAAGGATAATAGCTGACTCTAAGAGAGAGGATTTAGAAAAAGTTG
AGGATGACTTTGCTGGAGATAAAGATAAATCCTTTGATTCTAAAATGAATGATATCATTAAAAAAGTAATTTTGAGTAGA
GAACAGAAAAATAATCAATTAATGACAAGAGGAAGTGAAGAGGATAATTTAAAAAGGACAGAAAAAGAAAAAGGGTTAGT
ATTTGGAAGACCTGGACGAATACTTCATATAGATGGAGATCCATCATATATGGAAACCTGCTTAAAGGCGTACAAGCAAT
TAAACTTAAATGCTGTAGGAATAGCAGTATCCGAAAGAGAACAACCTTTAAAAATTTTATCTTTAGTTAAGGAATATAAT
CCAGATATAGTTGTATTAACTGGCCATGATGGGGTTCTTAAAGATTCTAAGGGAATGCTTGATTTAAATAATTATAGAAA
CTCAAAGTATTTTATTGAATCTGTAAAAATTTTAAGAAATTATAATTCAAGTTATGATGAGCTTGTTATTTTTGCTGGTG
CTTGTCAATCTTGTTATGAAAGTATTTTAGAAGCAGGTGCTAATTTTGCAAGTTCACCTAATAGGGTACTTATACATTGT
TTAGATCCAGTTTTAGTATGTGAAAGAGTTGCATATACAAGAATAGATGAAATTGTTTCAATAAAAGATGTTATAGAAAA
TACAATAACTGGAATAAAAGGAGTGGGTGGATTACAAACTAGAGGAAAATATAGAGAAGGTTATCCAAAATCCTTATATT
TAAATTAA

Upstream 100 bases:

>100_bases
AATAAAAAAACAATAAATTACATGAGTATATAGTATCAGCACACTTACAAATAAATCTTCATATTATGATAATAGGACTA
TATAAGTTAGGAGAAGGTAT

Downstream 100 bases:

>100_bases
TAGAATAAAATAAGACATTTAAGTTAATAATATAATTGGATGTTTTAGTTTAAATATAGTATATTTTTGTTGACAAGACA
TGGACTTATATAGTAAAATT

Product: peptidase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MKVGDLVVRKSYSKDITFKIIDIKENEEGITYILKGLHIRIIADSKREDLEKVEDDFAGDKDKSFDSKMNDIIKKVILSR
EQKNNQLMTRGSEEDNLKRTEKEKGLVFGRPGRILHIDGDPSYMETCLKAYKQLNLNAVGIAVSEREQPLKILSLVKEYN
PDIVVLTGHDGVLKDSKGMLDLNNYRNSKYFIESVKILRNYNSSYDELVIFAGACQSCYESILEAGANFASSPNRVLIHC
LDPVLVCERVAYTRIDEIVSIKDVIENTITGIKGVGGLQTRGKYREGYPKSLYLN

Sequences:

>Translated_295_residues
MKVGDLVVRKSYSKDITFKIIDIKENEEGITYILKGLHIRIIADSKREDLEKVEDDFAGDKDKSFDSKMNDIIKKVILSR
EQKNNQLMTRGSEEDNLKRTEKEKGLVFGRPGRILHIDGDPSYMETCLKAYKQLNLNAVGIAVSEREQPLKILSLVKEYN
PDIVVLTGHDGVLKDSKGMLDLNNYRNSKYFIESVKILRNYNSSYDELVIFAGACQSCYESILEAGANFASSPNRVLIHC
LDPVLVCERVAYTRIDEIVSIKDVIENTITGIKGVGGLQTRGKYREGYPKSLYLN
>Mature_295_residues
MKVGDLVVRKSYSKDITFKIIDIKENEEGITYILKGLHIRIIADSKREDLEKVEDDFAGDKDKSFDSKMNDIIKKVILSR
EQKNNQLMTRGSEEDNLKRTEKEKGLVFGRPGRILHIDGDPSYMETCLKAYKQLNLNAVGIAVSEREQPLKILSLVKEYN
PDIVVLTGHDGVLKDSKGMLDLNNYRNSKYFIESVKILRNYNSSYDELVIFAGACQSCYESILEAGANFASSPNRVLIHC
LDPVLVCERVAYTRIDEIVSIKDVIENTITGIKGVGGLQTRGKYREGYPKSLYLN

Specific function: Cleaves the spore coat proteins spoIVA and safA. May cooperate with tgl to mediate the temperature-dependent cross- linking of coat proteins like gerQ [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Forespore outer membrane. Note=Synthesized in the mother cell compartment and assembled on the surface of the forespore [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U57 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008764
- ProDom:   PD127708 [H]

Pfam domain/function: PF05582 Peptidase_U57 [H]

EC number: NA

Molecular weight: Translated: 33398; Mature: 33398

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVGDLVVRKSYSKDITFKIIDIKENEEGITYILKGLHIRIIADSKREDLEKVEDDFAGD
CCCCHHHHHHCCCCCEEEEEEEECCCCCCHHHEECCCEEEEEECCCHHHHHHHHHHHCCC
KDKSFDSKMNDIIKKVILSREQKNNQLMTRGSEEDNLKRTEKEKGLVFGRPGRILHIDGD
CCCCHHHHHHHHHHHHHHHHHHCCCHHEECCCCHHHHHHHHHHCCEEEECCCCEEEECCC
PSYMETCLKAYKQLNLNAVGIAVSEREQPLKILSLVKEYNPDIVVLTGHDGVLKDSKGML
HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCE
DLNNYRNSKYFIESVKILRNYNSSYDELVIFAGACQSCYESILEAGANFASSPNRVLIHC
ECCCCCCCHHHHHHHHHHHHCCCCHHHEEEEHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
LDPVLVCERVAYTRIDEIVSIKDVIENTITGIKGVGGLQTRGKYREGYPKSLYLN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCC
>Mature Secondary Structure
MKVGDLVVRKSYSKDITFKIIDIKENEEGITYILKGLHIRIIADSKREDLEKVEDDFAGD
CCCCHHHHHHCCCCCEEEEEEEECCCCCCHHHEECCCEEEEEECCCHHHHHHHHHHHCCC
KDKSFDSKMNDIIKKVILSREQKNNQLMTRGSEEDNLKRTEKEKGLVFGRPGRILHIDGD
CCCCHHHHHHHHHHHHHHHHHHCCCHHEECCCCHHHHHHHHHHCCEEEECCCCEEEECCC
PSYMETCLKAYKQLNLNAVGIAVSEREQPLKILSLVKEYNPDIVVLTGHDGVLKDSKGML
HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCE
DLNNYRNSKYFIESVKILRNYNSSYDELVIFAGACQSCYESILEAGANFASSPNRVLIHC
ECCCCCCCHHHHHHHHHHHHCCCCHHHEEEEHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
LDPVLVCERVAYTRIDEIVSIKDVIENTITGIKGVGGLQTRGKYREGYPKSLYLN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]