Definition | Clostridium perfringens str. 13, complete genome. |
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Accession | NC_003366 |
Length | 3,031,430 |
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The map label for this gene is pldB [H]
Identifier: 18309926
GI number: 18309926
Start: 1141575
End: 1142564
Strand: Direct
Name: pldB [H]
Synonym: CPE0944
Alternate gene names: 18309926
Gene position: 1141575-1142564 (Clockwise)
Preceding gene: 18309921
Following gene: 18309929
Centisome position: 37.66
GC content: 27.78
Gene sequence:
>990_bases ATGTGTAAAACTTTAAATAGAAAATATATTTATAAATATGGGGAGAAAAAAGAGGATGTAGAAATAGTTGAAAATATGCT AAATAGGATGAGAAATAGTGGAACTTTTAAAGGAGAGAATTTTGCTAATATATATTATGAAAAATACATAGTGGAAGAAT CGGATAAAGCAATAGTTATATGTCATGGGTTTTCGGAATGTATAGAGAAGTATCATGAAATAATATACTATTTTCTAAAT GAAGGTTTTTCAGTTTATATAATGGAACATAGAGGTCATGGGAGATCAGGCTGTTTAAGTAAATCTTGTAATACACAGGT GGAAGTAGAATCCTTTGATTACTATGTTAAAGATCTAAAGACATTTTTAAATGAGGTTGTATTAAAAGATAAGAGGTTTA ATAATAATTTATATTTATTTGCACATTCTATGGGGGGAGCTATAGGTACTATATTTTTAGAAAATAATCATGGGTATTTT AAGAAGGTAATTTTAAATTCTCCAATGTTTAGAATAAATACAAGAGAATACTCTCATATAAAATGCAAATTAATAGCTAA ATTTTTAATTCTTATGGGAAAAGGAGAGAATTTTATTTTTGGACAAAAACCCTTTGAGGAAGAGGAGAATTTAGAGGCAT CAGGAACATCAGATAAACTTAGACATGGCTTATACCATAAATTTCTCCTAGAAAATCCTATTTTGAGAAGAGGTGGAGGC TCTATTCATTGGTATAAAGAAGCTGCAAGGGCAACTGATTGTTTAATGAAAAAGAGAAATATAGAGAGAATTGACACGCC TATTTTATTATTTAAAAGTGAGTTTGATTCCTATGTTGACACAAAATTTCATGATGAGTTTAAAAAGGTAGCTAAGTATT GTGAGCTTATTGAAGTTAAGGGAAGTAAACATGAGGGATTTTTTGAAAAAGATGAAATTCTTTATGATTATTTAGATAAG ATATTTAAATTTTTAGAGGAAAATAATTAG
Upstream 100 bases:
>100_bases AATTGATTTTAACCTTTTATAAATATTTGTTTTTAATAAGTAGTATAATTATCTTAGGAAAAATATATAATCTATGAACA TATAAAAAAGGGGGAACTTT
Downstream 100 bases:
>100_bases ATATTATAAGAGAGGTTGTGCCTCTCTTATAATATCTTTTATATTGATAATCTTTCTTATAATAAACCTTCATTTTTAAG TTTAGTAATAGATTTATCTA
Product: lysophospholipase
Products: NA
Alternate protein names: Lecithinase B [H]
Number of amino acids: Translated: 329; Mature: 329
Protein sequence:
>329_residues MCKTLNRKYIYKYGEKKEDVEIVENMLNRMRNSGTFKGENFANIYYEKYIVEESDKAIVICHGFSECIEKYHEIIYYFLN EGFSVYIMEHRGHGRSGCLSKSCNTQVEVESFDYYVKDLKTFLNEVVLKDKRFNNNLYLFAHSMGGAIGTIFLENNHGYF KKVILNSPMFRINTREYSHIKCKLIAKFLILMGKGENFIFGQKPFEEEENLEASGTSDKLRHGLYHKFLLENPILRRGGG SIHWYKEAARATDCLMKKRNIERIDTPILLFKSEFDSYVDTKFHDEFKKVAKYCELIEVKGSKHEGFFEKDEILYDYLDK IFKFLEENN
Sequences:
>Translated_329_residues MCKTLNRKYIYKYGEKKEDVEIVENMLNRMRNSGTFKGENFANIYYEKYIVEESDKAIVICHGFSECIEKYHEIIYYFLN EGFSVYIMEHRGHGRSGCLSKSCNTQVEVESFDYYVKDLKTFLNEVVLKDKRFNNNLYLFAHSMGGAIGTIFLENNHGYF KKVILNSPMFRINTREYSHIKCKLIAKFLILMGKGENFIFGQKPFEEEENLEASGTSDKLRHGLYHKFLLENPILRRGGG SIHWYKEAARATDCLMKKRNIERIDTPILLFKSEFDSYVDTKFHDEFKKVAKYCELIEVKGSKHEGFFEKDEILYDYLDK IFKFLEENN >Mature_329_residues MCKTLNRKYIYKYGEKKEDVEIVENMLNRMRNSGTFKGENFANIYYEKYIVEESDKAIVICHGFSECIEKYHEIIYYFLN EGFSVYIMEHRGHGRSGCLSKSCNTQVEVESFDYYVKDLKTFLNEVVLKDKRFNNNLYLFAHSMGGAIGTIFLENNHGYF KKVILNSPMFRINTREYSHIKCKLIAKFLILMGKGENFIFGQKPFEEEENLEASGTSDKLRHGLYHKFLLENPILRRGGG SIHWYKEAARATDCLMKKRNIERIDTPILLFKSEFDSYVDTKFHDEFKKVAKYCELIEVKGSKHEGFFEKDEILYDYLDK IFKFLEENN
Specific function: Unknown
COG id: COG2267
COG function: function code I; Lysophospholipase
Gene ontology:
Cell location: Cell inner membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI48994980, Length=314, Percent_Identity=28.9808917197452, Blast_Score=130, Evalue=1e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: =3.1.1.5 [H]
Molecular weight: Translated: 38889; Mature: 38889
Theoretical pI: Translated: 7.56; Mature: 7.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCKTLNRKYIYKYGEKKEDVEIVENMLNRMRNSGTFKGENFANIYYEKYIVEESDKAIVI CCCCCCCHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHEEEEEEEECCCCEEEE CHGFSECIEKYHEIIYYFLNEGFSVYIMEHRGHGRSGCLSKSCNTQVEVESFDYYVKDLK ECCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHH TFLNEVVLKDKRFNNNLYLFAHSMGGAIGTIFLENNHGYFKKVILNSPMFRINTREYSHI HHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEECCCCHHHHHHHCCCEEEEECCCCCHH KCKLIAKFLILMGKGENFIFGQKPFEEEENLEASGTSDKLRHGLYHKFLLENPILRRGGG HHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCC SIHWYKEAARATDCLMKKRNIERIDTPILLFKSEFDSYVDTKFHDEFKKVAKYCELIEVK CEEHHHHHHHHHHHHHHHCCHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC GSKHEGFFEKDEILYDYLDKIFKFLEENN CCCCCCCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MCKTLNRKYIYKYGEKKEDVEIVENMLNRMRNSGTFKGENFANIYYEKYIVEESDKAIVI CCCCCCCHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHEEEEEEEECCCCEEEE CHGFSECIEKYHEIIYYFLNEGFSVYIMEHRGHGRSGCLSKSCNTQVEVESFDYYVKDLK ECCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHH TFLNEVVLKDKRFNNNLYLFAHSMGGAIGTIFLENNHGYFKKVILNSPMFRINTREYSHI HHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEECCCCHHHHHHHCCCEEEEECCCCCHH KCKLIAKFLILMGKGENFIFGQKPFEEEENLEASGTSDKLRHGLYHKFLLENPILRRGGG HHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCC SIHWYKEAARATDCLMKKRNIERIDTPILLFKSEFDSYVDTKFHDEFKKVAKYCELIEVK CEEHHHHHHHHHHHHHHHCCHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC GSKHEGFFEKDEILYDYLDKIFKFLEENN CCCCCCCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]