| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is rho [H]
Identifier: 182682668
GI number: 182682668
Start: 2437478
End: 2439172
Strand: Direct
Name: rho [H]
Synonym: XfasM23_2158
Alternate gene names: 182682668
Gene position: 2437478-2439172 (Clockwise)
Preceding gene: 182682667
Following gene: 182682672
Centisome position: 96.13
GC content: 50.32
Gene sequence:
>1695_bases TTGTCTGATATCACAAGTTCCGAAAGCGGGAGCGCTACCTCGCATGGCGAAAGCGAAAAAACCGTGCGTAAAATCCGCAC AAGCAAGTCCAGTGTGGAAAGTAGCCAACAATCCGTGACACACCAAACCGTACAGCCACAAACACCAGAGACCGAAGCTC AACGTGCTGCGCATTTGGAATCAGCCCCCCCTCCCTCGCAAGTCATGTCCCAAACGTCTGCAACCACTCCCTCCGTACAG GACAGCAGTGAATCAGCAGAAGGCTATGGGCAACAGAACCAGCGATTCAATAACAACAGACGGGATCGCTTCCGGAACCG ACGCGAGCGTAATCGTGATCGTTTCCGCGATGAAAACAATAGCAACGGTGAAGACGGCAACCACGAACCATACATGCCAC GTCCACACCCAAGTGTGCCAGAGGGATTCCCAATATATTCGCTGAGCGATCTGAAAAAGATGCCAGCACACAAACTGCTA GAAATCGCTGAGCAACTCAACATCCACGAAGGTGTAGCGCGTGCACGCAAGCAAGATGTGATCTTTGCACTTCTAAAAGT ACTGACCCGTCACGGCGAAGGCGTGTTTGCTGACGGCGTTCTGGAAATCCTTCCAGATGGTTTTGGCTTTCTGCGCGCAG CCGAAGCCAGCTACTTGGCCGGTCCAGACGATACCTATATTTCCCCCAGTCAAATTCGCCGCTTCAATCTACGCACTGGT GATCACCTGTCGGGCCGGATTCGTTTCCCTAAGGACGGTGAACGGTACTTTGCATTGTCAATCGTTGATACGATTAATGG CGAACCTCTGGAAGCTTCCAAAAATAAGATCCTTTTTGAGAACCTGACCCCACTGTTTCCACGCAAACGCTTCCGTTTGG AACGCGCTGACGGCTCGACAGAGGATATTACCGGCCGCATCCTTGATTTGATGGCACCACAAGGCAAGGGGCAACGTGCA CTAATAGTATCCCCCCCAAAAGCCGGTAAAACGATGCTAATGCAACAGGTAGCAACGGCGATCACTACCAATCATCCAGA AGTACACCTGATTGTATTACTGATTGACGAACGTCCTGAAGAAGTGACAGAAATGCAGCGCACTGTTCGGGGCGAAGTTA TTTCCTCAACGTTTGACGAGCCAGCTGCACGCCATGTACAAGTCGCCGAAATGGTCATCGAACGCGCAAAGCGCTTAATC GAACATAAAAAGGATGTAGTCATCCTACTTGACTCAATCACCCGTTTGGCACGTGCCTATAACAACGTTGTACCCAGCTC AGGCAAGGTACTCACTGGTGGCGTGGATGCACACGCACTACATCGCCCCAAACGCTTCTTCGGTGCAGCACGCAATGTCG AAGAAGGTGGCTCGCTGACCATCATCGCAACCGCACTCATCGATACCGGCAGCAAAATGGATGAGGTAATCTATGAAGAG TTCAAGGGTACTGGCAACTGCGAGTTACATCTAAATCGCCGTATTGCCGAGAAACGCGTATATCCGGCAATTGATATCAA CCGTTCCGGTACTCGCCGTGAAGATTTATTGATCGAATCCGATCTATTGCAGAAAATTTGGATCCTTCGCAAATTACTGC ACCCAATGGACGAGATTGCAGCAATCGAGTTTGTGCTTGATAAAATGAAGAACACCAAGTCGAACGACGAGTTCTTTGGT TCAATGAAGCGCTAA
Upstream 100 bases:
>100_bases AACGCGCGCTGCCGTATCCTGAAATTACTCCCACTTCTTACACCTTGTCCGCCTTTTCAGGGCGCTCGCCTCTCCTATAG CTATAGCGAGGAAAATACAA
Downstream 100 bases:
>100_bases CTAATCCCTGTCCTTGCAGCCTAGACCATAGACACCTACACAAACTACAGTCTACTGATATATCGGGATCATTACAGATC CCAATGGGTGCCTTTACTTA
Product: transcription termination factor Rho
Products: NA
Alternate protein names: ATP-dependent helicase Rho [H]
Number of amino acids: Translated: 564; Mature: 563
Protein sequence:
>564_residues MSDITSSESGSATSHGESEKTVRKIRTSKSSVESSQQSVTHQTVQPQTPETEAQRAAHLESAPPPSQVMSQTSATTPSVQ DSSESAEGYGQQNQRFNNNRRDRFRNRRERNRDRFRDENNSNGEDGNHEPYMPRPHPSVPEGFPIYSLSDLKKMPAHKLL EIAEQLNIHEGVARARKQDVIFALLKVLTRHGEGVFADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTG DHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKILFENLTPLFPRKRFRLERADGSTEDITGRILDLMAPQGKGQRA LIVSPPKAGKTMLMQQVATAITTNHPEVHLIVLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLI EHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDAHALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEE FKGTGNCELHLNRRIAEKRVYPAIDINRSGTRREDLLIESDLLQKIWILRKLLHPMDEIAAIEFVLDKMKNTKSNDEFFG SMKR
Sequences:
>Translated_564_residues MSDITSSESGSATSHGESEKTVRKIRTSKSSVESSQQSVTHQTVQPQTPETEAQRAAHLESAPPPSQVMSQTSATTPSVQ DSSESAEGYGQQNQRFNNNRRDRFRNRRERNRDRFRDENNSNGEDGNHEPYMPRPHPSVPEGFPIYSLSDLKKMPAHKLL EIAEQLNIHEGVARARKQDVIFALLKVLTRHGEGVFADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTG DHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKILFENLTPLFPRKRFRLERADGSTEDITGRILDLMAPQGKGQRA LIVSPPKAGKTMLMQQVATAITTNHPEVHLIVLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLI EHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDAHALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEE FKGTGNCELHLNRRIAEKRVYPAIDINRSGTRREDLLIESDLLQKIWILRKLLHPMDEIAAIEFVLDKMKNTKSNDEFFG SMKR >Mature_563_residues SDITSSESGSATSHGESEKTVRKIRTSKSSVESSQQSVTHQTVQPQTPETEAQRAAHLESAPPPSQVMSQTSATTPSVQD SSESAEGYGQQNQRFNNNRRDRFRNRRERNRDRFRDENNSNGEDGNHEPYMPRPHPSVPEGFPIYSLSDLKKMPAHKLLE IAEQLNIHEGVARARKQDVIFALLKVLTRHGEGVFADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGD HLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKILFENLTPLFPRKRFRLERADGSTEDITGRILDLMAPQGKGQRAL IVSPPKAGKTMLMQQVATAITTNHPEVHLIVLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLIE HKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDAHALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEF KGTGNCELHLNRRIAEKRVYPAIDINRSGTRREDLLIESDLLQKIWILRKLLHPMDEIAAIEFVLDKMKNTKSNDEFFGS MKR
Specific function: Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template [H]
COG id: COG1158
COG function: function code K; Transcription termination factor
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Rho family [H]
Homologues:
Organism=Escherichia coli, GI1790217, Length=418, Percent_Identity=71.2918660287081, Blast_Score=627, Evalue=0.0,
Paralogues:
None
Copy number: 300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000194 - InterPro: IPR003593 - InterPro: IPR011129 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR011112 - InterPro: IPR011113 - InterPro: IPR004665 [H]
Pfam domain/function: PF00006 ATP-synt_ab; PF07498 Rho_N; PF07497 Rho_RNA_bind [H]
EC number: NA
Molecular weight: Translated: 63296; Mature: 63165
Theoretical pI: Translated: 7.99; Mature: 7.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDITSSESGSATSHGESEKTVRKIRTSKSSVESSQQSVTHQTVQPQTPETEAQRAAHLE CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC SAPPPSQVMSQTSATTPSVQDSSESAEGYGQQNQRFNNNRRDRFRNRRERNRDRFRDENN CCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCC SNGEDGNHEPYMPRPHPSVPEGFPIYSLSDLKKMPAHKLLEIAEQLNIHEGVARARKQDV CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH IFALLKVLTRHGEGVFADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTG HHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHEECCCCC DHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKILFENLTPLFPRKRFRLERADGST CCCCCEEECCCCCCEEEEEEEEECCCCCCCCCCCCEEEHHCCCCCCCHHHHEEECCCCCC EDITGRILDLMAPQGKGQRALIVSPPKAGKTMLMQQVATAITTNHPEVHLIVLLIDERPE HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCH EVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLIEHKKDVVILLDSITRLARAY HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHH NNVVPSSGKVLTGGVDAHALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEE HCCCCCCCCEEECCCCHHHHHCCHHHHHHHCCCCCCCCEEEEEEEHHHCCCHHHHHHHHH FKGTGNCELHLNRRIAEKRVYPAIDINRSGTRREDLLIESDLLQKIWILRKLLHPMDEIA HCCCCCEEEEECHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH AIEFVLDKMKNTKSNDEFFGSMKR HHHHHHHHHHCCCCCHHHHHCCCC >Mature Secondary Structure SDITSSESGSATSHGESEKTVRKIRTSKSSVESSQQSVTHQTVQPQTPETEAQRAAHLE CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC SAPPPSQVMSQTSATTPSVQDSSESAEGYGQQNQRFNNNRRDRFRNRRERNRDRFRDENN CCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCC SNGEDGNHEPYMPRPHPSVPEGFPIYSLSDLKKMPAHKLLEIAEQLNIHEGVARARKQDV CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH IFALLKVLTRHGEGVFADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTG HHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHEECCCCC DHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKILFENLTPLFPRKRFRLERADGST CCCCCEEECCCCCCEEEEEEEEECCCCCCCCCCCCEEEHHCCCCCCCHHHHEEECCCCCC EDITGRILDLMAPQGKGQRALIVSPPKAGKTMLMQQVATAITTNHPEVHLIVLLIDERPE HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCH EVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLIEHKKDVVILLDSITRLARAY HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHH NNVVPSSGKVLTGGVDAHALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEE HCCCCCCCCEEECCCCHHHHHCCHHHHHHHCCCCCCCCEEEEEEEHHHCCCHHHHHHHHH FKGTGNCELHLNRRIAEKRVYPAIDINRSGTRREDLLIESDLLQKIWILRKLLHPMDEIA HCCCCCEEEEECHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH AIEFVLDKMKNTKSNDEFFGSMKR HHHHHHHHHHCCCCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10910347 [H]