| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is rlmL
Identifier: 182682637
GI number: 182682637
Start: 2395848
End: 2398094
Strand: Reverse
Name: rlmL
Synonym: XfasM23_2125
Alternate gene names: 182682637
Gene position: 2398094-2395848 (Counterclockwise)
Preceding gene: 182682638
Following gene: 182682636
Centisome position: 94.57
GC content: 58.08
Gene sequence:
>2247_bases GTGGTGGCTTCTGTTGCTGTTTTCCCCATCGTGGCAGGTGTGAGGTGCTGGTTTCCGGTTTGGGTTGATGATGTGAGATT TTTTGTTTCCTGCGCTAAAGGTTTGGAATATCTGTTGGTTGATGAAGTGTTGGCGCTTGGTGCCGCTGGGGCTACGGCGA CAGTGGCCGGTGTCAATGTGGAAGGTGGGTTGTGCGATGCGCAGCGTCTGGTGCTGTGGTCGCGTTTGGCCAGCCGTGTG TTGTGGCCGTTGGCGGCGTTCGCATGTGCGGATGAGGATGCGTTATATGCGGGTGTTGCGGCGTTGCCGTGGGTGGAGCA TGTTTTGCCGGGCCAGACGTTGGCGGTGGATGCGCACGTTTCCGGGGAGGCGATCACTCATGCGCGTTACGCTGCACAGC GTGTGAAGGATGCGGTGGTCGATACGTTGCGTGATGCTGGTGTGGTGCGGCCATCGGTTGATGTGGAGCACCCAGATGTA CGTTTGAATTTGTCGCTCCGCAAGGGGCGTGCGACGTTGTCGGTGGATCTGGGTGGTCGGGCGCTGCATCACCGTGGTTG GCGTCAGGCACCGCATGCGGCGTCATTGAAGGAGCATTTGGCGGCTGCGGTGTTGTTGCGTGCCGGCTGGGCCAAGGTCT ATGCCGAAGGTGGGGGGCTGCTCGATCCGATGTGTGGCAGTGGCACGCTCTTGATTGAGGGGGCGTTGATGGTGGCCGAT GTGGCACCTGGGTTGTCGCGTTATGCCGATCCTGATGCGATGTCTCATGTGTCGGTAGCAGAGCGTCCGGTGTTGTTGCC GAGTCGTTGGCGTGGTTTTGATGTCGTGGCGTGGGAAGCCTTAGTGGTTGATGCGCAGCAGCGTGCCAGGCGAGGGTTGG CGGAGTTGCGTCCGGTGTTGCACGGCAGTGACATTGATCCTCGGGCACTTGGTGCTGCGTTTGCGAATGCGCGGGCGGCG GGTGTTCAAGATGCGATTGAGTTTGTTGTTGCCGGTATTGATGTGCTGCCGGCGGTGTCTGAGCCTCACGGTGTGGTGGT GTGTAACGCGCCCTATGATGTGCGTTTGGCGGCCGATCCGGGGTTGTATCGGCATTTGGGGGATGCGTTACGGCGTGTGG TCCCGCGCTGGCGGGCCGCGCTAGTGTGTGGCAGTAGTACGTTGGCATTTGCAACGGGGTTGCGGGCTGATAAGAAGTAT CAGTTTTTCAACGGTGCGTTGGAATGTGTGTTGATTGTCTGTGATCCGGTGGTGCCGTTAGCGCGTGAGGCAGGGGGAGC ACAGGCGTTGAGTGAGGGGGCGCAGATGGCTGCTAATCGTCTGCGCAAGAATGTGCAGCGCTTGAAGAAGTGGCGTATCC GGGCGGGGGTGGAGTGTTACCGGGTTTACGATGCTGATTTGCCGGAGTATGCGGCTGCGATTGATGTGTATCAGGAGGTG GATGGTGCGCGGCGGTTATTCCTGCATGTGCAGGAGTATGCGGCGCCGGCGTCGATTCCTGAGGGGGATGTGCGGCGGAG GCGTCATGAGTTGCTTGCTGCGGTACGCGCGGTGTTTGATGTGTCGGTGGCTCAGGTGGCTTTAAAAACGCGGCAGCGCG GTAAGGGGGGGAGTCAGTACGGTTGTTTTGCGCAGCGTGGGGAGTTTTTTCATGTGTGTGAGCATGGTGCGTTGTTGCGT GTGAATTTGTTTGATTATCTGGATACGGGGTTGTTTCTTGATCATCGTCCTTTGCGCGGGCGCATGGCGCGTGAGGCGGT GGGTAAGCGTTTTCTAAATGTGTTCTGTTACACGGGTGTGGCGAGTGTGGAGGCAGCAGTGGCTGGTGCTGCGGCGACAA CCAGTGTGGATTTGTCATCCACGTATTTGCATTGGTGTACGGATAATTTTGCGTTGAATGGGCAAGGTGGGGTGAGGCAT CGTTTGGTGCAGGCGGATGCGTTGGCTTGGTTGGAGGCGGAGCGTGGTCAATACGATGTCATTTTTTGTGATCCGCCGAC GTTTTCGAATTCGGCGCGCGCTGATGATTTTGATGTGCAACGCGATCATGTGCGTTTGCTGCGTGCGGCTGTTGCGCGGT TGACCCCTGGTGGGGTGCTTTACTTTTCCAATAATTTCCGCCGTTTCCGTTTGGACGTGGATGCGGTTGCTGCGTTTGCG CAGTGTGAGGAAATCAGCCCGGTGACGATTGATTTAGATTTTTCGCGCAATACGAGGATCCATCGTACGTGGCTGTTGTG GCGGTAG
Upstream 100 bases:
>100_bases TTGCTTTTGTCTGGTTCTGGGTGTGTTGATGTCGTGTTTGAAGTGGTCCTGACAAGAGTGCTGGTAAAGCGTGGCGTGAT GGCCCAACACGGCGCTCCGT
Downstream 100 bases:
>100_bases TGGGGTGTTTGCAGGGAGTTGTTGGGGTGTTTCTCTGGAGGTAATCGGCAGTGTTGCGCTGTACGGTTGCGGTGGTAGGG CCGTTAGGGGCAATGGTGGG
Product: 23S rRNA m(2)G2445 methyltransferase
Products: NA
Alternate protein names: 23S rRNA m2G2445 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase rlmL [H]
Number of amino acids: Translated: 748; Mature: 748
Protein sequence:
>748_residues MVASVAVFPIVAGVRCWFPVWVDDVRFFVSCAKGLEYLLVDEVLALGAAGATATVAGVNVEGGLCDAQRLVLWSRLASRV LWPLAAFACADEDALYAGVAALPWVEHVLPGQTLAVDAHVSGEAITHARYAAQRVKDAVVDTLRDAGVVRPSVDVEHPDV RLNLSLRKGRATLSVDLGGRALHHRGWRQAPHAASLKEHLAAAVLLRAGWAKVYAEGGGLLDPMCGSGTLLIEGALMVAD VAPGLSRYADPDAMSHVSVAERPVLLPSRWRGFDVVAWEALVVDAQQRARRGLAELRPVLHGSDIDPRALGAAFANARAA GVQDAIEFVVAGIDVLPAVSEPHGVVVCNAPYDVRLAADPGLYRHLGDALRRVVPRWRAALVCGSSTLAFATGLRADKKY QFFNGALECVLIVCDPVVPLAREAGGAQALSEGAQMAANRLRKNVQRLKKWRIRAGVECYRVYDADLPEYAAAIDVYQEV DGARRLFLHVQEYAAPASIPEGDVRRRRHELLAAVRAVFDVSVAQVALKTRQRGKGGSQYGCFAQRGEFFHVCEHGALLR VNLFDYLDTGLFLDHRPLRGRMAREAVGKRFLNVFCYTGVASVEAAVAGAAATTSVDLSSTYLHWCTDNFALNGQGGVRH RLVQADALAWLEAERGQYDVIFCDPPTFSNSARADDFDVQRDHVRLLRAAVARLTPGGVLYFSNNFRRFRLDVDAVAAFA QCEEISPVTIDLDFSRNTRIHRTWLLWR
Sequences:
>Translated_748_residues MVASVAVFPIVAGVRCWFPVWVDDVRFFVSCAKGLEYLLVDEVLALGAAGATATVAGVNVEGGLCDAQRLVLWSRLASRV LWPLAAFACADEDALYAGVAALPWVEHVLPGQTLAVDAHVSGEAITHARYAAQRVKDAVVDTLRDAGVVRPSVDVEHPDV RLNLSLRKGRATLSVDLGGRALHHRGWRQAPHAASLKEHLAAAVLLRAGWAKVYAEGGGLLDPMCGSGTLLIEGALMVAD VAPGLSRYADPDAMSHVSVAERPVLLPSRWRGFDVVAWEALVVDAQQRARRGLAELRPVLHGSDIDPRALGAAFANARAA GVQDAIEFVVAGIDVLPAVSEPHGVVVCNAPYDVRLAADPGLYRHLGDALRRVVPRWRAALVCGSSTLAFATGLRADKKY QFFNGALECVLIVCDPVVPLAREAGGAQALSEGAQMAANRLRKNVQRLKKWRIRAGVECYRVYDADLPEYAAAIDVYQEV DGARRLFLHVQEYAAPASIPEGDVRRRRHELLAAVRAVFDVSVAQVALKTRQRGKGGSQYGCFAQRGEFFHVCEHGALLR VNLFDYLDTGLFLDHRPLRGRMAREAVGKRFLNVFCYTGVASVEAAVAGAAATTSVDLSSTYLHWCTDNFALNGQGGVRH RLVQADALAWLEAERGQYDVIFCDPPTFSNSARADDFDVQRDHVRLLRAAVARLTPGGVLYFSNNFRRFRLDVDAVAAFA QCEEISPVTIDLDFSRNTRIHRTWLLWR >Mature_748_residues MVASVAVFPIVAGVRCWFPVWVDDVRFFVSCAKGLEYLLVDEVLALGAAGATATVAGVNVEGGLCDAQRLVLWSRLASRV LWPLAAFACADEDALYAGVAALPWVEHVLPGQTLAVDAHVSGEAITHARYAAQRVKDAVVDTLRDAGVVRPSVDVEHPDV RLNLSLRKGRATLSVDLGGRALHHRGWRQAPHAASLKEHLAAAVLLRAGWAKVYAEGGGLLDPMCGSGTLLIEGALMVAD VAPGLSRYADPDAMSHVSVAERPVLLPSRWRGFDVVAWEALVVDAQQRARRGLAELRPVLHGSDIDPRALGAAFANARAA GVQDAIEFVVAGIDVLPAVSEPHGVVVCNAPYDVRLAADPGLYRHLGDALRRVVPRWRAALVCGSSTLAFATGLRADKKY QFFNGALECVLIVCDPVVPLAREAGGAQALSEGAQMAANRLRKNVQRLKKWRIRAGVECYRVYDADLPEYAAAIDVYQEV DGARRLFLHVQEYAAPASIPEGDVRRRRHELLAAVRAVFDVSVAQVALKTRQRGKGGSQYGCFAQRGEFFHVCEHGALLR VNLFDYLDTGLFLDHRPLRGRMAREAVGKRFLNVFCYTGVASVEAAVAGAAATTSVDLSSTYLHWCTDNFALNGQGGVRH RLVQADALAWLEAERGQYDVIFCDPPTFSNSARADDFDVQRDHVRLLRAAVARLTPGGVLYFSNNFRRFRLDVDAVAAFA QCEEISPVTIDLDFSRNTRIHRTWLLWR
Specific function: Specifically methylates the guanosine in position 2445 (m2G2445) of 23S rRNA [H]
COG id: COG0116
COG function: function code L; Predicted N6-adenine-specific DNA methylase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 THUMP domain [H]
Homologues:
Organism=Escherichia coli, GI1787181, Length=737, Percent_Identity=42.3337856173677, Blast_Score=528, Evalue=1e-151, Organism=Escherichia coli, GI145693111, Length=152, Percent_Identity=32.2368421052632, Blast_Score=67, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000241 - InterPro: IPR017244 - InterPro: IPR019614 - InterPro: IPR004114 [H]
Pfam domain/function: PF10672 Methyltrans_SAM; PF02926 THUMP; PF01170 UPF0020 [H]
EC number: =2.1.1.173 [H]
Molecular weight: Translated: 81434; Mature: 81434
Theoretical pI: Translated: 7.81; Mature: 7.81
Prosite motif: PS51165 THUMP ; PS01261 UPF0020
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVASVAVFPIVAGVRCWFPVWVDDVRFFVSCAKGLEYLLVDEVLALGAAGATATVAGVNV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC EGGLCDAQRLVLWSRLASRVLWPLAAFACADEDALYAGVAALPWVEHVLPGQTLAVDAHV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC SGEAITHARYAAQRVKDAVVDTLRDAGVVRPSVDVEHPDVRLNLSLRKGRATLSVDLGGR CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCC ALHHRGWRQAPHAASLKEHLAAAVLLRAGWAKVYAEGGGLLDPMCGSGTLLIEGALMVAD HHHCCCCCCCCCHHHHHHHHHHHHHHHHCHHHEEECCCCCCCCCCCCCEEEEECCEEEEH VAPGLSRYADPDAMSHVSVAERPVLLPSRWRGFDVVAWEALVVDAQQRARRGLAELRPVL HCCCHHHCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHH HGSDIDPRALGAAFANARAAGVQDAIEFVVAGIDVLPAVSEPHGVVVCNAPYDVRLAADP CCCCCCHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECCC GLYRHLGDALRRVVPRWRAALVCGSSTLAFATGLRADKKYQFFNGALECVLIVCDPVVPL CHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHCCCCCCCHHHHHHHEEEEEEEECCCHHH AREAGGAQALSEGAQMAANRLRKNVQRLKKWRIRAGVECYRVYDADLPEYAAAIDVYQEV HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHH DGARRLFLHVQEYAAPASIPEGDVRRRRHELLAAVRAVFDVSVAQVALKTRQRGKGGSQY HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC GCFAQRGEFFHVCEHGALLRVNLFDYLDTGLFLDHRPLRGRMAREAVGKRFLNVFCYTGV CCHHHCCCEEEEECCCCEEEEEHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCH ASVEAAVAGAAATTSVDLSSTYLHWCTDNFALNGQGGVRHRLVQADALAWLEAERGQYDV HHHHHHHHCCHHCCEEECCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHHCCCCCCEEE IFCDPPTFSNSARADDFDVQRDHVRLLRAAVARLTPGGVLYFSNNFRRFRLDVDAVAAFA EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEHHHHHHHH QCEEISPVTIDLDFSRNTRIHRTWLLWR HHHCCCCEEEEEECCCCCEEEEEEEEEC >Mature Secondary Structure MVASVAVFPIVAGVRCWFPVWVDDVRFFVSCAKGLEYLLVDEVLALGAAGATATVAGVNV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC EGGLCDAQRLVLWSRLASRVLWPLAAFACADEDALYAGVAALPWVEHVLPGQTLAVDAHV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC SGEAITHARYAAQRVKDAVVDTLRDAGVVRPSVDVEHPDVRLNLSLRKGRATLSVDLGGR CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCC ALHHRGWRQAPHAASLKEHLAAAVLLRAGWAKVYAEGGGLLDPMCGSGTLLIEGALMVAD HHHCCCCCCCCCHHHHHHHHHHHHHHHHCHHHEEECCCCCCCCCCCCCEEEEECCEEEEH VAPGLSRYADPDAMSHVSVAERPVLLPSRWRGFDVVAWEALVVDAQQRARRGLAELRPVL HCCCHHHCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHH HGSDIDPRALGAAFANARAAGVQDAIEFVVAGIDVLPAVSEPHGVVVCNAPYDVRLAADP CCCCCCHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECCC GLYRHLGDALRRVVPRWRAALVCGSSTLAFATGLRADKKYQFFNGALECVLIVCDPVVPL CHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHCCCCCCCHHHHHHHEEEEEEEECCCHHH AREAGGAQALSEGAQMAANRLRKNVQRLKKWRIRAGVECYRVYDADLPEYAAAIDVYQEV HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHH DGARRLFLHVQEYAAPASIPEGDVRRRRHELLAAVRAVFDVSVAQVALKTRQRGKGGSQY HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC GCFAQRGEFFHVCEHGALLRVNLFDYLDTGLFLDHRPLRGRMAREAVGKRFLNVFCYTGV CCHHHCCCEEEEECCCCEEEEEHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCH ASVEAAVAGAAATTSVDLSSTYLHWCTDNFALNGQGGVRHRLVQADALAWLEAERGQYDV HHHHHHHHCCHHCCEEECCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHHCCCCCCEEE IFCDPPTFSNSARADDFDVQRDHVRLLRAAVARLTPGGVLYFSNNFRRFRLDVDAVAAFA EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEHHHHHHHH QCEEISPVTIDLDFSRNTRIHRTWLLWR HHHCCCCEEEEEECCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA