Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is 182682512
Identifier: 182682512
GI number: 182682512
Start: 2236444
End: 2237229
Strand: Direct
Name: 182682512
Synonym: XfasM23_1999
Alternate gene names: NA
Gene position: 2236444-2237229 (Clockwise)
Preceding gene: 182682511
Following gene: 182682513
Centisome position: 88.2
GC content: 55.73
Gene sequence:
>786_bases ATGACGATTCAATCTCTCATCGTCACCATTGGCTCGGGAGGTCTCGTCGGCTTCGCGCTCGGTCTGCTCGGAGGCGGCGG CTCGATCCTTGCCACACCGCTCCTGCTTTATGTCGTGGGTGTGACCAACCCCCATATCGCCATCGGAACAAGCGCAGTCG CAGTGTCCGTCAACGCTTATGCCAATCTAATCGCCCATGCGTGGAAGGGCCATGTATGGTGGCGATCCGCCGTGATTTTT GCGCTGGTCGGGACGTTGGGCGCCTTCCTTGGCTCAAGCATCGGTATGCTGATTGATGGACAGCGTTTACTATTGCTGTT CGGTTTGCTGATGGCCATGGTGGGTCTGCTGATGCTGCGTGGGCGTGCAACTGCTCCTCGTGCCGAGCACCACCAAACTG TACTTCGGATGTGTATGAAAACCAGCTCAGTCGCAATACTCACGGGTGCAGCATCGGGCTTCTTCGGGATTGGTGGCGGT TTTCTGATCGTGCCCGCCCTCATTTTTGCGACTAGGATGCCCACTATCAACGCCATTGGCTCCTCGTTACTCGCGGTCGG CAGCTTTGGGCTCATCACTACCTTGAACTATGCACGCCACGACCTGGTGAACTGGACGATTGCCATGGAATTCATCGTAG GCGGTATTACAGGAGGAGGGCTAGGCACACTTCTAGCAACCCGACTTTCAGCAAGCAAACACCTGCTCAATCGGGTTTTC GGGTTGATCGTAATTGCTGTCGCGATCTATGTCATTTGGCGGAGTTGGGCTTCTCTCGTAGCTTGA
Upstream 100 bases:
>100_bases TCGCCAGTCTGTCTACAGGACTTGGGTCAGTTCTGCTCTTTGTAGCAGCGATGGCGGCAGGCATGATCATCCATGATCGA ATTGTCGTGAGGAGCCTCTC
Downstream 100 bases:
>100_bases CTCGATATCCCCCCTGGGCTACCAGAAAGGACAATGGCATTCGGATTCTTTCGTGAGTATTCATGTCAAAGATGCCCAGG GAGCACCATCAAGCACGTAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 261; Mature: 260
Protein sequence:
>261_residues MTIQSLIVTIGSGGLVGFALGLLGGGGSILATPLLLYVVGVTNPHIAIGTSAVAVSVNAYANLIAHAWKGHVWWRSAVIF ALVGTLGAFLGSSIGMLIDGQRLLLLFGLLMAMVGLLMLRGRATAPRAEHHQTVLRMCMKTSSVAILTGAASGFFGIGGG FLIVPALIFATRMPTINAIGSSLLAVGSFGLITTLNYARHDLVNWTIAMEFIVGGITGGGLGTLLATRLSASKHLLNRVF GLIVIAVAIYVIWRSWASLVA
Sequences:
>Translated_261_residues MTIQSLIVTIGSGGLVGFALGLLGGGGSILATPLLLYVVGVTNPHIAIGTSAVAVSVNAYANLIAHAWKGHVWWRSAVIF ALVGTLGAFLGSSIGMLIDGQRLLLLFGLLMAMVGLLMLRGRATAPRAEHHQTVLRMCMKTSSVAILTGAASGFFGIGGG FLIVPALIFATRMPTINAIGSSLLAVGSFGLITTLNYARHDLVNWTIAMEFIVGGITGGGLGTLLATRLSASKHLLNRVF GLIVIAVAIYVIWRSWASLVA >Mature_260_residues TIQSLIVTIGSGGLVGFALGLLGGGGSILATPLLLYVVGVTNPHIAIGTSAVAVSVNAYANLIAHAWKGHVWWRSAVIFA LVGTLGAFLGSSIGMLIDGQRLLLLFGLLMAMVGLLMLRGRATAPRAEHHQTVLRMCMKTSSVAILTGAASGFFGIGGGF LIVPALIFATRMPTINAIGSSLLAVGSFGLITTLNYARHDLVNWTIAMEFIVGGITGGGLGTLLATRLSASKHLLNRVFG LIVIAVAIYVIWRSWASLVA
Specific function: Unknown
COG id: COG0730
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential)
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0721 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y1894_XYLFT (Q87AD2)
Other databases:
- EMBL: AE009442 - RefSeq: NP_780076.1 - STRING: Q87AD2 - GeneID: 1143236 - GenomeReviews: AE009442_GR - KEGG: xft:PD1894 - eggNOG: COG0730 - HOGENOM: HBG726491 - OMA: SAISHAR - ProtClustDB: CLSK799607 - BioCyc: XFAS183190:PD_1894-MONOMER - InterPro: IPR002781
Pfam domain/function: PF01925 DUF81
EC number: NA
Molecular weight: Translated: 27078; Mature: 26947
Theoretical pI: Translated: 11.68; Mature: 11.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0x163b8b4c)-; HASH(0x1631f900)-; HASH(0x15013544)-; HASH(0x158b9390)-; HASH(0x169c7b18)-; HASH(0x164ccaf4)-; HASH(0x167fe8d0)-; HASH(0x163fb5bc)-;
Cys/Met content:
0.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIQSLIVTIGSGGLVGFALGLLGGGGSILATPLLLYVVGVTNPHIAIGTSAVAVSVNAY CCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEECCHHHEEEHHHH ANLIAHAWKGHVWWRSAVIFALVGTLGAFLGSSIGMLIDGQRLLLLFGLLMAMVGLLMLR HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHC GRATAPRAEHHQTVLRMCMKTSSVAILTGAASGFFGIGGGFLIVPALIFATRMPTINAIG CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHH SSLLAVGSFGLITTLNYARHDLVNWTIAMEFIVGGITGGGLGTLLATRLSASKHLLNRVF HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH GLIVIAVAIYVIWRSWASLVA HHHHHHHHHHHHHHHHHHHCH >Mature Secondary Structure TIQSLIVTIGSGGLVGFALGLLGGGGSILATPLLLYVVGVTNPHIAIGTSAVAVSVNAY CHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEECCHHHEEEHHHH ANLIAHAWKGHVWWRSAVIFALVGTLGAFLGSSIGMLIDGQRLLLLFGLLMAMVGLLMLR HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHC GRATAPRAEHHQTVLRMCMKTSSVAILTGAASGFFGIGGGFLIVPALIFATRMPTINAIG CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHH SSLLAVGSFGLITTLNYARHDLVNWTIAMEFIVGGITGGGLGTLLATRLSASKHLLNRVF HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH GLIVIAVAIYVIWRSWASLVA HHHHHHHHHHHHHHHHHHHCH
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12533478