Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is 182682458
Identifier: 182682458
GI number: 182682458
Start: 2175653
End: 2176924
Strand: Direct
Name: 182682458
Synonym: XfasM23_1945
Alternate gene names: NA
Gene position: 2175653-2176924 (Clockwise)
Preceding gene: 182682456
Following gene: 182682463
Centisome position: 85.8
GC content: 55.35
Gene sequence:
>1272_bases GTGGCCCAGCTTGCCGTTAAAGGCGGGATTGCTGCGGCCGAAGGGGCAGCCTATGGCGCACTTGGTGAAACACGCACCGG AGAAAATCGGCTCACGAATGCAGGCTACGGCGCATTAGGCGGCGTGTTAGGCCGTGGCGTGAGCGGCGTTGTGCACGGCG CAGCGCGTCGCCTAGTGCGTGAAGCTGATCCGATCCTACGTGCCGCGACCGACATTGCGCAACGTGAAGGGATTCCGCTG CATATTTCTCAGATCGCACAATCCACGCCGCTACGTACCGCCGCTAGTGTCGCAAAATACATCCCATTCAGCGGCGCAGA CGCAGCTGCAGGCAATCAGCAGAACGCGTGGAACAAAGCACTAACCCGCCACGTAGGCGATGCAACAGAACGGCTAGATG ATCGCTGGTTAGCAAGCCAGAAACAGCGTTTTAACGATACATATAACGCGATTTGGGACGATAGAAACATAGCGTTATCT CCCCAAGCGGCTGCACGTATGCAGGAAGTAGTGAACGATGCGTATCGAGATTTAGGCGCCGACGGCGGGAAAATCGTTCA AAACCAGTTTCACCGTATTTTTAATGACATCGTGCGCGCAGGGCATGAAGGCCCCATTAGCGGCAGAAACTATCAAACGT TGGTGCGTGATTTAGCAGGCGTCCAGCCTGGTACATCCACCGGCCACTATGTAGGCCGTCTACGGAAAGAACTTGTTAAC GATGCAGAACAATCGCTAAAAACGTCTAATGATCCTGGCGACGTTGCAGCGCTTGAATTGTTTAAAAAAACCAACCAGCA GTACAACAATTTTAAAACCTTGGAAAAGCTTCTCACGCGCCCCGCAGGTGCGCGCGCAGATATTACACCGGCGGGATTAT GGAGCGCGGTTAACGCACGCGGCCCCAAAGCAACGCAAGAGTATCGCGATTTAGCAAAAGTCGGCCAAACCGTCTTAAAA GATCCAATCCCCGATTCAGGCACCCCTGGCCGCATGTTATCTATGGGCCTGCTCGGCGGCGGCGGCGTGGTCACAGGTGG CCTAATACCGACATTAGCCACCATCGCCGGAGGCGTAACACTTGGCGGCGCGCTGAACTCAGCAACGCTAGGAAACCTGC TAGCGCGCAACGCCGCAACCCCGAGCTTACTAGCTCCCTTAGCTCCTCTCTTAACTGCTGAAGGCGCTATTGGCACTTTG CGCCGTGCAGCACGTCAAGCAGCGCAACGTGCATTCATCGTACATCAACAACAACTGCACAACGCCGACTAG
Upstream 100 bases:
>100_bases AGTGTAAGGTGCGCCTTTGCTCTCTAATTCCGAACGCCACTGAGTGAATGCGATGGAGTTCTTGTAGTCTGCATAGGAAG GAGGAGCGGGGAGCGGTAAC
Downstream 100 bases:
>100_bases TAACCCTATTTCCCAAGGCTTCACAGCAAGCGGCGCAGCGTCCCCTGAATCCTGAATCCTGAATCCTGAATCCTGAATCC TGAATCCTGAATCCTGAATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 423; Mature: 422
Protein sequence:
>423_residues MAQLAVKGGIAAAEGAAYGALGETRTGENRLTNAGYGALGGVLGRGVSGVVHGAARRLVREADPILRAATDIAQREGIPL HISQIAQSTPLRTAASVAKYIPFSGADAAAGNQQNAWNKALTRHVGDATERLDDRWLASQKQRFNDTYNAIWDDRNIALS PQAAARMQEVVNDAYRDLGADGGKIVQNQFHRIFNDIVRAGHEGPISGRNYQTLVRDLAGVQPGTSTGHYVGRLRKELVN DAEQSLKTSNDPGDVAALELFKKTNQQYNNFKTLEKLLTRPAGARADITPAGLWSAVNARGPKATQEYRDLAKVGQTVLK DPIPDSGTPGRMLSMGLLGGGGVVTGGLIPTLATIAGGVTLGGALNSATLGNLLARNAATPSLLAPLAPLLTAEGAIGTL RRAARQAAQRAFIVHQQQLHNAD
Sequences:
>Translated_423_residues MAQLAVKGGIAAAEGAAYGALGETRTGENRLTNAGYGALGGVLGRGVSGVVHGAARRLVREADPILRAATDIAQREGIPL HISQIAQSTPLRTAASVAKYIPFSGADAAAGNQQNAWNKALTRHVGDATERLDDRWLASQKQRFNDTYNAIWDDRNIALS PQAAARMQEVVNDAYRDLGADGGKIVQNQFHRIFNDIVRAGHEGPISGRNYQTLVRDLAGVQPGTSTGHYVGRLRKELVN DAEQSLKTSNDPGDVAALELFKKTNQQYNNFKTLEKLLTRPAGARADITPAGLWSAVNARGPKATQEYRDLAKVGQTVLK DPIPDSGTPGRMLSMGLLGGGGVVTGGLIPTLATIAGGVTLGGALNSATLGNLLARNAATPSLLAPLAPLLTAEGAIGTL RRAARQAAQRAFIVHQQQLHNAD >Mature_422_residues AQLAVKGGIAAAEGAAYGALGETRTGENRLTNAGYGALGGVLGRGVSGVVHGAARRLVREADPILRAATDIAQREGIPLH ISQIAQSTPLRTAASVAKYIPFSGADAAAGNQQNAWNKALTRHVGDATERLDDRWLASQKQRFNDTYNAIWDDRNIALSP QAAARMQEVVNDAYRDLGADGGKIVQNQFHRIFNDIVRAGHEGPISGRNYQTLVRDLAGVQPGTSTGHYVGRLRKELVND AEQSLKTSNDPGDVAALELFKKTNQQYNNFKTLEKLLTRPAGARADITPAGLWSAVNARGPKATQEYRDLAKVGQTVLKD PIPDSGTPGRMLSMGLLGGGGVVTGGLIPTLATIAGGVTLGGALNSATLGNLLARNAATPSLLAPLAPLLTAEGAIGTLR RAARQAAQRAFIVHQQQLHNAD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44498; Mature: 44367
Theoretical pI: Translated: 10.29; Mature: 10.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQLAVKGGIAAAEGAAYGALGETRTGENRLTNAGYGALGGVLGRGVSGVVHGAARRLVR CCCEECCCCCHHHCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHH EADPILRAATDIAQREGIPLHISQIAQSTPLRTAASVAKYIPFSGADAAAGNQQNAWNKA HHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH LTRHVGDATERLDDRWLASQKQRFNDTYNAIWDDRNIALSPQAAARMQEVVNDAYRDLGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHCC DGGKIVQNQFHRIFNDIVRAGHEGPISGRNYQTLVRDLAGVQPGTSTGHYVGRLRKELVN CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH DAEQSLKTSNDPGDVAALELFKKTNQQYNNFKTLEKLLTRPAGARADITPAGLWSAVNAR HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC GPKATQEYRDLAKVGQTVLKDPIPDSGTPGRMLSMGLLGGGGVVTGGLIPTLATIAGGVT CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCHH LGGALNSATLGNLLARNAATPSLLAPLAPLLTAEGAIGTLRRAARQAAQRAFIVHQQQLH CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC NAD CCC >Mature Secondary Structure AQLAVKGGIAAAEGAAYGALGETRTGENRLTNAGYGALGGVLGRGVSGVVHGAARRLVR CCEECCCCCHHHCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHH EADPILRAATDIAQREGIPLHISQIAQSTPLRTAASVAKYIPFSGADAAAGNQQNAWNKA HHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH LTRHVGDATERLDDRWLASQKQRFNDTYNAIWDDRNIALSPQAAARMQEVVNDAYRDLGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHCC DGGKIVQNQFHRIFNDIVRAGHEGPISGRNYQTLVRDLAGVQPGTSTGHYVGRLRKELVN CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH DAEQSLKTSNDPGDVAALELFKKTNQQYNNFKTLEKLLTRPAGARADITPAGLWSAVNAR HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC GPKATQEYRDLAKVGQTVLKDPIPDSGTPGRMLSMGLLGGGGVVTGGLIPTLATIAGGVT CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCHH LGGALNSATLGNLLARNAATPSLLAPLAPLLTAEGAIGTLRRAARQAAQRAFIVHQQQLH CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC NAD CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA