Click here to switch to the map view.

The map label for this gene is visC [H]

Identifier: 182682451

GI number: 182682451

Start: 2168990

End: 2170171

Strand: Direct

Name: visC [H]

Synonym: XfasM23_1938

Alternate gene names: 182682451

Gene position: 2168990-2170171 (Clockwise)

Preceding gene: 182682450

Following gene: 182682454

Centisome position: 85.54

GC content: 60.58

Gene sequence:

>1182_bases
ATGAACCGAACTCAGCGACCGGATGTACTCATCACTGGCGGCGGCGTCGTCGGTGCCAGCAGCGCCCTGGCATTGGCGAA
AACAGGGTTACACGTCGCCTTGATTGAAAAATACGAACCACCGCGTTGGCAAGCAACGGTTCCGGATCTGCGTGTCTACG
CATTTGCCCCGGACAGTGCCGCACTCCTGCGCACCTTCAACGTATGGCCGACCGTGTGCGCGACACGCGCCCAGCCATAC
CATCACATGCGGATCTGGGACAGTGGCGGAGCGGATGAATTGCACTTCGACGCTGCCACATTGGGCTGCGAACAACTCGG
CTGGATCGTCGAGAACGCACTCCTAGTCAACCAGTTGTGGTCTGCACTTGCGGATGCCGGCGTACAACTGCATTGCCCTG
CACGGATCACCGCCCTAGAGCAAGACACCGACAGAGTGCGTTTACGCTTGGAGGACGGCCGGCGACTCGAAGCACGCCTG
GCCATCGCTGCCGACGGCGCCGACTCCACCTTGCGTCAATTGGCGCACCTGCCAGTACACCGACATGACTATGCACAACG
CAGCATTGTCGCCTTTGTCGCAACCGAACACCCACACCAAGCCACCGCCTGGCAATGCTTTTTACCAAGCGGACCATTGG
CATTGCTGCCATTTACTGATGAGCGCAGCTCAATCGTCTGGACGCTCCCCGATGTTGAAGCGCAACGCCTCCTGACACTG
GACGAAACAACATTCGCACGCGAACTCACCACTGCCTTCGGTGGGCGCCTAGGACACATACAGCTCATCTCACCACGCAC
CGCATTCCCACTGCGCCGCCAACTGGCCACCGACTACATCGCCGGTCGGGTACTGACACTCGGTGACGCCGCACATGTCG
TCCACCCACTGGCCGGACAGGGCGTCAACCTCGGTTTGCGCGATGTAACCGCATTGCAAACCCTGATCCAACAGGCACAC
ACGCGCCATGTTGACTGGGCCACACCGCACCGCCTGCAACGCTGGGCACGGACACGCCGCAGTGATAACACCCTCGCGGC
CTACACGTTCGATGCCATTAACCGGGTATTCTCCAACGACGCATTTCACCTCACCCTGCTACGTGGCCGGGTACTGAGCT
TGGTCGACCGCCTGCCACCGCTCGTCAACGCCCTATGGCGTCGTGCCTCAGGGGTGAATTGA

Upstream 100 bases:

>100_bases
GCCTGCTTGCCGTCTCCCACATCAGCGAGCTGCAAGCACTCCTGGTCAACGGCGCGATGGGCTTCCGTGGCGACGTACCG
CAATTGTGTCTCAACAGCGT

Downstream 100 bases:

>100_bases
TCCCAGCACACTACATGCTTCTATAGCCCATACCGCAACACTCCAACACAAAGATACGCTGCACATGCGCAGCCGCACGG
CGGAGATGACACCTAAATCC

Product: 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MNRTQRPDVLITGGGVVGASSALALAKTGLHVALIEKYEPPRWQATVPDLRVYAFAPDSAALLRTFNVWPTVCATRAQPY
HHMRIWDSGGADELHFDAATLGCEQLGWIVENALLVNQLWSALADAGVQLHCPARITALEQDTDRVRLRLEDGRRLEARL
AIAADGADSTLRQLAHLPVHRHDYAQRSIVAFVATEHPHQATAWQCFLPSGPLALLPFTDERSSIVWTLPDVEAQRLLTL
DETTFARELTTAFGGRLGHIQLISPRTAFPLRRQLATDYIAGRVLTLGDAAHVVHPLAGQGVNLGLRDVTALQTLIQQAH
TRHVDWATPHRLQRWARTRRSDNTLAAYTFDAINRVFSNDAFHLTLLRGRVLSLVDRLPPLVNALWRRASGVN

Sequences:

>Translated_393_residues
MNRTQRPDVLITGGGVVGASSALALAKTGLHVALIEKYEPPRWQATVPDLRVYAFAPDSAALLRTFNVWPTVCATRAQPY
HHMRIWDSGGADELHFDAATLGCEQLGWIVENALLVNQLWSALADAGVQLHCPARITALEQDTDRVRLRLEDGRRLEARL
AIAADGADSTLRQLAHLPVHRHDYAQRSIVAFVATEHPHQATAWQCFLPSGPLALLPFTDERSSIVWTLPDVEAQRLLTL
DETTFARELTTAFGGRLGHIQLISPRTAFPLRRQLATDYIAGRVLTLGDAAHVVHPLAGQGVNLGLRDVTALQTLIQQAH
TRHVDWATPHRLQRWARTRRSDNTLAAYTFDAINRVFSNDAFHLTLLRGRVLSLVDRLPPLVNALWRRASGVN
>Mature_393_residues
MNRTQRPDVLITGGGVVGASSALALAKTGLHVALIEKYEPPRWQATVPDLRVYAFAPDSAALLRTFNVWPTVCATRAQPY
HHMRIWDSGGADELHFDAATLGCEQLGWIVENALLVNQLWSALADAGVQLHCPARITALEQDTDRVRLRLEDGRRLEARL
AIAADGADSTLRQLAHLPVHRHDYAQRSIVAFVATEHPHQATAWQCFLPSGPLALLPFTDERSSIVWTLPDVEAQRLLTL
DETTFARELTTAFGGRLGHIQLISPRTAFPLRRQLATDYIAGRVLTLGDAAHVVHPLAGQGVNLGLRDVTALQTLIQQAH
TRHVDWATPHRLQRWARTRRSDNTLAAYTFDAINRVFSNDAFHLTLLRGRVLSLVDRLPPLVNALWRRASGVN

Specific function: Not yet known [H]

COG id: COG0654

COG function: function code HC; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiH/COQ6 family [H]

Homologues:

Organism=Homo sapiens, GI32967305, Length=387, Percent_Identity=30.4909560723514, Blast_Score=164, Evalue=1e-40,
Organism=Homo sapiens, GI32967307, Length=353, Percent_Identity=30.028328611898, Blast_Score=138, Evalue=1e-32,
Organism=Escherichia coli, GI1789273, Length=392, Percent_Identity=38.265306122449, Blast_Score=238, Evalue=4e-64,
Organism=Escherichia coli, GI1786883, Length=376, Percent_Identity=37.2340425531915, Blast_Score=225, Evalue=4e-60,
Organism=Escherichia coli, GI1789274, Length=390, Percent_Identity=33.8461538461538, Blast_Score=187, Evalue=1e-48,
Organism=Caenorhabditis elegans, GI25146631, Length=441, Percent_Identity=28.7981859410431, Blast_Score=167, Evalue=7e-42,
Organism=Saccharomyces cerevisiae, GI6321694, Length=452, Percent_Identity=24.3362831858407, Blast_Score=102, Evalue=9e-23,
Organism=Drosophila melanogaster, GI19920760, Length=434, Percent_Identity=29.4930875576037, Blast_Score=155, Evalue=6e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002938
- InterPro:   IPR003042
- InterPro:   IPR018168
- InterPro:   IPR010971 [H]

Pfam domain/function: PF01494 FAD_binding_3 [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 43588; Mature: 43588

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS01304 UBIH

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRTQRPDVLITGGGVVGASSALALAKTGLHVALIEKYEPPRWQATVPDLRVYAFAPDSA
CCCCCCCCEEEECCCCCCCCHHHHHHHCCCEEEEEECCCCCCCEECCCCEEEEEECCCCH
ALLRTFNVWPTVCATRAQPYHHMRIWDSGGADELHFDAATLGCEQLGWIVENALLVNQLW
HHHEECCCCHHHHHHCCCCCEEEEEECCCCCCCEEEHHHHHCHHHHHHHHHHHHHHHHHH
SALADAGVQLHCPARITALEQDTDRVRLRLEDGRRLEARLAIAADGADSTLRQLAHLPVH
HHHHHCCEEEECCCEEEEECCCCCEEEEEECCCCEEEEEEEEEECCCHHHHHHHHHCCCC
RHDYAQRSIVAFVATEHPHQATAWQCFLPSGPLALLPFTDERSSIVWTLPDVEAQRLLTL
HHHHHHHEEEEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCHHEEEE
DETTFARELTTAFGGRLGHIQLISPRTAFPLRRQLATDYIAGRVLTLGDAAHVVHPLAGQ
CCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCEEEEECCHHHHHHCCCCC
GVNLGLRDVTALQTLIQQAHTRHVDWATPHRLQRWARTRRSDNTLAAYTFDAINRVFSND
CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHCCC
AFHLTLLRGRVLSLVDRLPPLVNALWRRASGVN
CEEEEEHHHHHHHHHHHCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MNRTQRPDVLITGGGVVGASSALALAKTGLHVALIEKYEPPRWQATVPDLRVYAFAPDSA
CCCCCCCCEEEECCCCCCCCHHHHHHHCCCEEEEEECCCCCCCEECCCCEEEEEECCCCH
ALLRTFNVWPTVCATRAQPYHHMRIWDSGGADELHFDAATLGCEQLGWIVENALLVNQLW
HHHEECCCCHHHHHHCCCCCEEEEEECCCCCCCEEEHHHHHCHHHHHHHHHHHHHHHHHH
SALADAGVQLHCPARITALEQDTDRVRLRLEDGRRLEARLAIAADGADSTLRQLAHLPVH
HHHHHCCEEEECCCEEEEECCCCCEEEEEECCCCEEEEEEEEEECCCHHHHHHHHHCCCC
RHDYAQRSIVAFVATEHPHQATAWQCFLPSGPLALLPFTDERSSIVWTLPDVEAQRLLTL
HHHHHHHEEEEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCHHEEEE
DETTFARELTTAFGGRLGHIQLISPRTAFPLRRQLATDYIAGRVLTLGDAAHVVHPLAGQ
CCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCEEEEECCHHHHHHCCCCC
GVNLGLRDVTALQTLIQQAHTRHVDWATPHRLQRWARTRRSDNTLAAYTFDAINRVFSND
CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHCCC
AFHLTLLRGRVLSLVDRLPPLVNALWRRASGVN
CEEEEEHHHHHHHHHHHCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on paired donors, with incorporation or reduction of molecular oxygen; With NADH2 or NADPH2 as one donor, and incorporation of one atom of oxygen [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1339425; 9278503 [H]