Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is 182682445
Identifier: 182682445
GI number: 182682445
Start: 2157732
End: 2160104
Strand: Direct
Name: 182682445
Synonym: XfasM23_1932
Alternate gene names: NA
Gene position: 2157732-2160104 (Clockwise)
Preceding gene: 182682443
Following gene: 182682446
Centisome position: 85.09
GC content: 60.05
Gene sequence:
>2373_bases ATGGCAACACGACGCACTTTTTTGCGGGGTGCGATCAGCCTGACGCTGATTGGCAGCACTGGCCAGCTACGTGCTCTGGC ACATCCACGCGCCAATACCTGGGCACTGCCCATTGACACACAGGCACAGGCAGATCTAACGCGTTACGTGGATGTGTTTA TCGGCAGCAGCGGTCATGGGCACACTTTCCCAGGGGCTACGCTGCCTTTTGGCATGGTGCAACTCAGCCCGGACACCGAT AACGCGGTCTGGGATGCTTGCTCCGGCTATCACGCCTCCAACGGCTCGATCATGGGGTTCTCGCACACTCACCTCTCCGG CACGGGCATTGGCGACATGTTGGACATTTTGCTCATGCCTGGGACTGGGGACGTGAAGCTGGCACCTGGGCCGCTCAATG CTCCTGAGACCGGCTACCGGCAACGCTACGATCACGCCGAGGAAGTGGCCTCGCCTGGTTACTACCAGGTGCGCCTGAAG GACACGGACATTGTGGCCGAGCTGACCGCCACCGCACGGACTGGCCTGCATCGTTACCATTTCCCTCAACATCAAGCCGG TCACCTGCTGTTGGACTTGAGCCACGCGATGCAGGACAACCCAAGCACCCCACCACGGTTGCGCGATGTCGAGTTATCGA TCGTCGATACACGCACGCTACTGGGCGGCCGCCGTGTGTATCAGTGGGCCAAGGGCCGCTATCTCTTCTTCGCTATGCGG TTGTCACGCCCGTTTGCACGTGCGCAGTTGTATAGCAACGATGCGCCGCTGACTGCGGACACGCGCCAGGTTCAGGGCGT GTGTCTGAAAGCGGCGTTGCACTTCCCCGATGCGGGCGAGGCGCCGTTGCTGGTCAAAGTCGGCCTGTCTGCGGTCAGCG CCGCAAATGCGCTTGCCAATCTCGACGCAGAATTGCCGGATTTCGATTTTGCCCGTGTACATGCCGAGGCCGTGGCGGCC TGGGAGAATGCTCTAGGGCGCGCGCGGATCGCAACCGACAATCCGGCGCAACGTCGCATTTTTTACACCAGTCTGTACCA CAGTCTGCTGGCGCCCACGTTGTTCAGTGATGTGGATGGGCGCTACCGCGGTATGGATCTCCAGGTGCATACGCTGCCAA CTGGCTACCACAATTACAGTACCTACTCTTTATGGGACACCTACCGCGCGCTGCATCCGCTGCTGACGCTGGTGCAGTCG GATCGGGTCCCGGATCTGTTGCAATGTCTGGTCCGTGGCGCGGCTGAGTGTCCGGACGGTGTCGGGATCTGGCCATTACA GGGCGTGGAGACCGGCTGCATGATCGGCTATCACTCCGCGGTAGCACTCGCCGAGGGCTATACAAAAGGATTCACTGGCA TCGACTATGCGGCGGCTTGGCCGCACTACCGCAAGCGCGCCATGCAGGATCACGCTCACGGTCTGCGGTACTACCGCAGG CTCGGCTATATCCCCAGTGACAAGGTGGATGAATCCGTCAGCCGGACGCTGGAGTATGCCTATGACGATTGGGCATGTGC GCATTTGGCCACCGCCGCAGGGGCGCACAGTGAGGCACGGGTGCTACGCGCACGCTCCCGCCATTATCGCCATGTGTTCA ACCGCGACAGTGGCTTTATGCAACCGCGTCTGGAAAATGGTGCCTGGGCAACGCCGTTTGATCCACGCGCGTTGGGGCAC TTGAAGCAGTGGCACGATTTCACGGAGTGCAATGCTTGGCAGGCAACGTTCCTCAATCAGCACGATGTGTACGGTTATAT GGCTCTGTTCGGCGGCGCTGATCACTTTGCCGCCAAACTCGACGCTCTGTTTTCTGCACTCTCGGAATTGCCGCCAGGAG CACCACCGGATATTGATGGGATGGTGGGTCAGTACGCCCACGGTAACGAGCCAAGCCACCATATCGCCTATCTGTACGTG TATGCGGGGCAAGCGTACAAAACGCAAGCGATGGTGCGCCGCCTACTCCGGGAGCAATACCATGATGGGCGCGATGGTCT GTCCGGGAATGAGGATTGCGGGCAGATGAGTGCTTGGTTTGTGCTCAGTGCGCTGGGGATGTACGCAGTGGATCCGGTCA GCGGTATCTATGTGATCGGCAGCCCGTTGTTCCCATACGCGGAGTTGGACGTGGGCCGAGGCCGTAAGCTGCGCATCTTG GCGCGTCACACCAGTGCGTCCAATGTCTATGTGCAAGCACTGCGCTGGAACGGCAGTCCGATGACGCGTGCTTGGCTGCG CCACACTGAATTGGCAGGAGGGGGGACGCTGGAATTTGAGATGGGTGCGCAACCGAATCTCGATTTCGGCACCCATCCGC AGGATCTGCCTCCATCTTTCATGGCATTGCAGCCAGTTCCGAAACACGCATGA
Upstream 100 bases:
>100_bases TCTGCTCGGAGGGAACCGCTGTGCTGCGCTGCTGAATGGATGAGTTGTCCCGACCTCTTCAGACACCTTCCCACTCCATA CACGGCGGAGGAGACCTACG
Downstream 100 bases:
>100_bases GCGGTGTAGGAACAGCCATGCTTATTTCCGTATCCATGTGGCGCGTTCATGGATGCAGCAGTCAGTACAAAACGCGGGGC GGCGACTCTGGGTGGATGAT
Product: alpha-1,2-mannosidase
Products: NA
Alternate protein names: Alpha-1 2-Mannosidase Family Protein; Glycoside Hydrolase Family; Glycosyl Hydrolase Family; Secreted Protein; Glycoside Hydrolase Family Protein; Sugar Hydrolase; Outer Membrane Protein; Exported Alpha-1 2-Mannosidase; Alpha-1 2-Mannosidase Protein; Immunoreactive; Antigen; Glycosyltransferase; Lipoprotein
Number of amino acids: Translated: 790; Mature: 789
Protein sequence:
>790_residues MATRRTFLRGAISLTLIGSTGQLRALAHPRANTWALPIDTQAQADLTRYVDVFIGSSGHGHTFPGATLPFGMVQLSPDTD NAVWDACSGYHASNGSIMGFSHTHLSGTGIGDMLDILLMPGTGDVKLAPGPLNAPETGYRQRYDHAEEVASPGYYQVRLK DTDIVAELTATARTGLHRYHFPQHQAGHLLLDLSHAMQDNPSTPPRLRDVELSIVDTRTLLGGRRVYQWAKGRYLFFAMR LSRPFARAQLYSNDAPLTADTRQVQGVCLKAALHFPDAGEAPLLVKVGLSAVSAANALANLDAELPDFDFARVHAEAVAA WENALGRARIATDNPAQRRIFYTSLYHSLLAPTLFSDVDGRYRGMDLQVHTLPTGYHNYSTYSLWDTYRALHPLLTLVQS DRVPDLLQCLVRGAAECPDGVGIWPLQGVETGCMIGYHSAVALAEGYTKGFTGIDYAAAWPHYRKRAMQDHAHGLRYYRR LGYIPSDKVDESVSRTLEYAYDDWACAHLATAAGAHSEARVLRARSRHYRHVFNRDSGFMQPRLENGAWATPFDPRALGH LKQWHDFTECNAWQATFLNQHDVYGYMALFGGADHFAAKLDALFSALSELPPGAPPDIDGMVGQYAHGNEPSHHIAYLYV YAGQAYKTQAMVRRLLREQYHDGRDGLSGNEDCGQMSAWFVLSALGMYAVDPVSGIYVIGSPLFPYAELDVGRGRKLRIL ARHTSASNVYVQALRWNGSPMTRAWLRHTELAGGGTLEFEMGAQPNLDFGTHPQDLPPSFMALQPVPKHA
Sequences:
>Translated_790_residues MATRRTFLRGAISLTLIGSTGQLRALAHPRANTWALPIDTQAQADLTRYVDVFIGSSGHGHTFPGATLPFGMVQLSPDTD NAVWDACSGYHASNGSIMGFSHTHLSGTGIGDMLDILLMPGTGDVKLAPGPLNAPETGYRQRYDHAEEVASPGYYQVRLK DTDIVAELTATARTGLHRYHFPQHQAGHLLLDLSHAMQDNPSTPPRLRDVELSIVDTRTLLGGRRVYQWAKGRYLFFAMR LSRPFARAQLYSNDAPLTADTRQVQGVCLKAALHFPDAGEAPLLVKVGLSAVSAANALANLDAELPDFDFARVHAEAVAA WENALGRARIATDNPAQRRIFYTSLYHSLLAPTLFSDVDGRYRGMDLQVHTLPTGYHNYSTYSLWDTYRALHPLLTLVQS DRVPDLLQCLVRGAAECPDGVGIWPLQGVETGCMIGYHSAVALAEGYTKGFTGIDYAAAWPHYRKRAMQDHAHGLRYYRR LGYIPSDKVDESVSRTLEYAYDDWACAHLATAAGAHSEARVLRARSRHYRHVFNRDSGFMQPRLENGAWATPFDPRALGH LKQWHDFTECNAWQATFLNQHDVYGYMALFGGADHFAAKLDALFSALSELPPGAPPDIDGMVGQYAHGNEPSHHIAYLYV YAGQAYKTQAMVRRLLREQYHDGRDGLSGNEDCGQMSAWFVLSALGMYAVDPVSGIYVIGSPLFPYAELDVGRGRKLRIL ARHTSASNVYVQALRWNGSPMTRAWLRHTELAGGGTLEFEMGAQPNLDFGTHPQDLPPSFMALQPVPKHA >Mature_789_residues ATRRTFLRGAISLTLIGSTGQLRALAHPRANTWALPIDTQAQADLTRYVDVFIGSSGHGHTFPGATLPFGMVQLSPDTDN AVWDACSGYHASNGSIMGFSHTHLSGTGIGDMLDILLMPGTGDVKLAPGPLNAPETGYRQRYDHAEEVASPGYYQVRLKD TDIVAELTATARTGLHRYHFPQHQAGHLLLDLSHAMQDNPSTPPRLRDVELSIVDTRTLLGGRRVYQWAKGRYLFFAMRL SRPFARAQLYSNDAPLTADTRQVQGVCLKAALHFPDAGEAPLLVKVGLSAVSAANALANLDAELPDFDFARVHAEAVAAW ENALGRARIATDNPAQRRIFYTSLYHSLLAPTLFSDVDGRYRGMDLQVHTLPTGYHNYSTYSLWDTYRALHPLLTLVQSD RVPDLLQCLVRGAAECPDGVGIWPLQGVETGCMIGYHSAVALAEGYTKGFTGIDYAAAWPHYRKRAMQDHAHGLRYYRRL GYIPSDKVDESVSRTLEYAYDDWACAHLATAAGAHSEARVLRARSRHYRHVFNRDSGFMQPRLENGAWATPFDPRALGHL KQWHDFTECNAWQATFLNQHDVYGYMALFGGADHFAAKLDALFSALSELPPGAPPDIDGMVGQYAHGNEPSHHIAYLYVY AGQAYKTQAMVRRLLREQYHDGRDGLSGNEDCGQMSAWFVLSALGMYAVDPVSGIYVIGSPLFPYAELDVGRGRKLRILA RHTSASNVYVQALRWNGSPMTRAWLRHTELAGGGTLEFEMGAQPNLDFGTHPQDLPPSFMALQPVPKHA
Specific function: Unknown
COG id: COG3537
COG function: function code G; Putative alpha-1,2-mannosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 87212; Mature: 87081
Theoretical pI: Translated: 7.12; Mature: 7.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATRRTFLRGAISLTLIGSTGQLRALAHPRANTWALPIDTQAQADLTRYVDVFIGSSGHG CCCHHHHHHCEEEEEEECCCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHEECCCCCC HTFPGATLPFGMVQLSPDTDNAVWDACSGYHASNGSIMGFSHTHLSGTGIGDMLDILLMP CCCCCCCCCCEEEEECCCCCCHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHEECC GTGDVKLAPGPLNAPETGYRQRYDHAEEVASPGYYQVRLKDTDIVAELTATARTGLHRYH CCCCEEECCCCCCCCCCHHHHHCCHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCHHHCC FPQHQAGHLLLDLSHAMQDNPSTPPRLRDVELSIVDTRTLLGGRRVYQWAKGRYLFFAMR CCCCCCCEEEEEEHHHHCCCCCCCCCCEEEEEEEEEHHHHHCCHHHHHHHCCCEEEEEEE LSRPFARAQLYSNDAPLTADTRQVQGVCLKAALHFPDAGEAPLLVKVGLSAVSAANALAN CCCCHHHHHHCCCCCCCCCCHHHHHHHHEEHEECCCCCCCCCEEEEECHHHHHHHHHHHH LDAELPDFDFARVHAEAVAAWENALGRARIATDNPAQRRIFYTSLYHSLLAPTLFSDVDG CCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC RYRGMDLQVHTLPTGYHNYSTYSLWDTYRALHPLLTLVQSDRVPDLLQCLVRGAAECPDG CEECCEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC VGIWPLQGVETGCMIGYHSAVALAEGYTKGFTGIDYAAAWPHYRKRAMQDHAHGLRYYRR CCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHH LGYIPSDKVDESVSRTLEYAYDDWACAHLATAAGAHSEARVLRARSRHYRHVFNRDSGFM HCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCC QPRLENGAWATPFDPRALGHLKQWHDFTECNAWQATFLNQHDVYGYMALFGGADHFAAKL CCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCHHHHHCCCCCHHEEHHHHCCCHHHHHHH DALFSALSELPPGAPPDIDGMVGQYAHGNEPSHHIAYLYVYAGQAYKTQAMVRRLLREQY HHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHH HDGRDGLSGNEDCGQMSAWFVLSALGMYAVDPVSGIYVIGSPLFPYAELDVGRGRKLRIL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEECCCCCCCEEEEE ARHTSASNVYVQALRWNGSPMTRAWLRHTELAGGGTLEFEMGAQPNLDFGTHPQDLPPSF EECCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC MALQPVPKHA EEECCCCCCC >Mature Secondary Structure ATRRTFLRGAISLTLIGSTGQLRALAHPRANTWALPIDTQAQADLTRYVDVFIGSSGHG CCHHHHHHCEEEEEEECCCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHEECCCCCC HTFPGATLPFGMVQLSPDTDNAVWDACSGYHASNGSIMGFSHTHLSGTGIGDMLDILLMP CCCCCCCCCCEEEEECCCCCCHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHEECC GTGDVKLAPGPLNAPETGYRQRYDHAEEVASPGYYQVRLKDTDIVAELTATARTGLHRYH CCCCEEECCCCCCCCCCHHHHHCCHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCHHHCC FPQHQAGHLLLDLSHAMQDNPSTPPRLRDVELSIVDTRTLLGGRRVYQWAKGRYLFFAMR CCCCCCCEEEEEEHHHHCCCCCCCCCCEEEEEEEEEHHHHHCCHHHHHHHCCCEEEEEEE LSRPFARAQLYSNDAPLTADTRQVQGVCLKAALHFPDAGEAPLLVKVGLSAVSAANALAN CCCCHHHHHHCCCCCCCCCCHHHHHHHHEEHEECCCCCCCCCEEEEECHHHHHHHHHHHH LDAELPDFDFARVHAEAVAAWENALGRARIATDNPAQRRIFYTSLYHSLLAPTLFSDVDG CCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC RYRGMDLQVHTLPTGYHNYSTYSLWDTYRALHPLLTLVQSDRVPDLLQCLVRGAAECPDG CEECCEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC VGIWPLQGVETGCMIGYHSAVALAEGYTKGFTGIDYAAAWPHYRKRAMQDHAHGLRYYRR CCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHH LGYIPSDKVDESVSRTLEYAYDDWACAHLATAAGAHSEARVLRARSRHYRHVFNRDSGFM HCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCC QPRLENGAWATPFDPRALGHLKQWHDFTECNAWQATFLNQHDVYGYMALFGGADHFAAKL CCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCHHHHHCCCCCHHEEHHHHCCCHHHHHHH DALFSALSELPPGAPPDIDGMVGQYAHGNEPSHHIAYLYVYAGQAYKTQAMVRRLLREQY HHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHH HDGRDGLSGNEDCGQMSAWFVLSALGMYAVDPVSGIYVIGSPLFPYAELDVGRGRKLRIL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEECCCCCCCEEEEE ARHTSASNVYVQALRWNGSPMTRAWLRHTELAGGGTLEFEMGAQPNLDFGTHPQDLPPSF EECCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC MALQPVPKHA EEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA