Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is thiE
Identifier: 182682298
GI number: 182682298
Start: 1975298
End: 1975912
Strand: Direct
Name: thiE
Synonym: XfasM23_1781
Alternate gene names: 182682298
Gene position: 1975298-1975912 (Clockwise)
Preceding gene: 182682295
Following gene: 182682299
Centisome position: 77.9
GC content: 52.36
Gene sequence:
>615_bases ATGCCCCAGCCTCGCGGCATCTACCTAATTACTCCTGATGAAACTGACACTGCACGACTTATCGCACACACCGCACCATT ACTGAATGGCATCGTTTGGCTGCAATACCGCAACAAACTAGCCAATACCGCATTACGCACAGAACAAGCACAGGCACTAC TAGCCCTATGCCGTCCAACCGGCATCCCCTTACTCATCAACGACGACTTGGAATTAGCACAAACCATTGGCGCAGATGGT GTCCACCTGGGCATGCATGACAGCAACGCCAGCATTGCGCGAGCACAATTAGGACCGCACGCCATCATAGGCGTCTCCTG CTACAACCAAATTGAACGTGCGAAACAAGCAATCAAAGCCGGTGCCAGCTACGTAGGCTTCGGTGCGTTCTATCCGAGTC ATACCAAAACCACCCCATACCGCGCCACACCAGAACTGCTACGCCAAACTACCCATTTGGGTGTACCACGCGTGGCCATC GGCGGACTGACGCCAAAGAATATTGCTCCCATCATCGAAGCCGGTGCAGAGCTACTCGCAGTGATCAGCGGAATCTACTC TGCAAAAAACCCAATCACTGCACTGAAAGCATATCAATCCCAATTCAACATCTGA
Upstream 100 bases:
>100_bases CCACATCATTGTGGAAGTTTCAAGCATAGGATCATTCCAAGAACATATTGATAAGACCACTGACATTGTCACACTGCATC CTCTACTTCGGAACCCCATC
Downstream 100 bases:
>100_bases ACAAACCATCCAGCCACACACATTCACCGTCAACGTAACCAACCACTCCATCACATCAATTTTTGTTGATGTACCAACAC ACCCTCGCCTCACTGACCAA
Product: thiamine-phosphate pyrophosphorylase
Products: NA
Alternate protein names: TMP pyrophosphorylase; TMP-PPase; Thiamine-phosphate synthase [H]
Number of amino acids: Translated: 204; Mature: 203
Protein sequence:
>204_residues MPQPRGIYLITPDETDTARLIAHTAPLLNGIVWLQYRNKLANTALRTEQAQALLALCRPTGIPLLINDDLELAQTIGADG VHLGMHDSNASIARAQLGPHAIIGVSCYNQIERAKQAIKAGASYVGFGAFYPSHTKTTPYRATPELLRQTTHLGVPRVAI GGLTPKNIAPIIEAGAELLAVISGIYSAKNPITALKAYQSQFNI
Sequences:
>Translated_204_residues MPQPRGIYLITPDETDTARLIAHTAPLLNGIVWLQYRNKLANTALRTEQAQALLALCRPTGIPLLINDDLELAQTIGADG VHLGMHDSNASIARAQLGPHAIIGVSCYNQIERAKQAIKAGASYVGFGAFYPSHTKTTPYRATPELLRQTTHLGVPRVAI GGLTPKNIAPIIEAGAELLAVISGIYSAKNPITALKAYQSQFNI >Mature_203_residues PQPRGIYLITPDETDTARLIAHTAPLLNGIVWLQYRNKLANTALRTEQAQALLALCRPTGIPLLINDDLELAQTIGADGV HLGMHDSNASIARAQLGPHAIIGVSCYNQIERAKQAIKAGASYVGFGAFYPSHTKTTPYRATPELLRQTTHLGVPRVAIG GLTPKNIAPIIEAGAELLAVISGIYSAKNPITALKAYQSQFNI
Specific function: Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) [H]
COG id: COG0352
COG function: function code H; Thiamine monophosphate synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TMP-PPase family [H]
Homologues:
Organism=Escherichia coli, GI1790426, Length=182, Percent_Identity=29.6703296703297, Blast_Score=62, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6325042, Length=159, Percent_Identity=30.8176100628931, Blast_Score=78, Evalue=8e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR022998 - InterPro: IPR003733 [H]
Pfam domain/function: PF02581 TMP-TENI [H]
EC number: =2.5.1.3 [H]
Molecular weight: Translated: 21870; Mature: 21738
Theoretical pI: Translated: 9.34; Mature: 9.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQPRGIYLITPDETDTARLIAHTAPLLNGIVWLQYRNKLANTALRTEQAQALLALCRPT CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GIPLLINDDLELAQTIGADGVHLGMHDSNASIARAQLGPHAIIGVSCYNQIERAKQAIKA CCEEEECCCHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCEEEHHHHHHHHHHHHHHHHC GASYVGFGAFYPSHTKTTPYRATPELLRQTTHLGVPRVAIGGLTPKNIAPIIEAGAELLA CCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHH VISGIYSAKNPITALKAYQSQFNI HHHHHHHCCCHHHHHHHHHHHCCC >Mature Secondary Structure PQPRGIYLITPDETDTARLIAHTAPLLNGIVWLQYRNKLANTALRTEQAQALLALCRPT CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GIPLLINDDLELAQTIGADGVHLGMHDSNASIARAQLGPHAIIGVSCYNQIERAKQAIKA CCEEEECCCHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCEEEHHHHHHHHHHHHHHHHC GASYVGFGAFYPSHTKTTPYRATPELLRQTTHLGVPRVAIGGLTPKNIAPIIEAGAELLA CCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHH VISGIYSAKNPITALKAYQSQFNI HHHHHHHCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10910347 [H]