Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is hemH
Identifier: 182682185
GI number: 182682185
Start: 1842259
End: 1843221
Strand: Reverse
Name: hemH
Synonym: XfasM23_1664
Alternate gene names: 182682185
Gene position: 1843221-1842259 (Counterclockwise)
Preceding gene: 182682190
Following gene: 182682180
Centisome position: 72.69
GC content: 55.56
Gene sequence:
>963_bases ATGAATCACACTTCTGATACTGCTTTACTGATTGTTAATCTTGGTACTCCTGAGGCGCCGACTGCGGCGGCGGTGCGCCG TTATCTGGGCGAATTCCTGAGTGATCGCCGCGTGGTATCCATTCCGCCGTTGTTTTGGAAGCCATTGCTGCATATGGTGA TTTTGCCGATTCGCGGCCCGCGTTCAGCCAGCAAATACGCCAAAGTGTGGTTGCAGGAAGGCTCTCCCCTCAGTGTGTAT ACCCGCCGTATTGCTGAAGGGCTGACGCAACATCTGCCTGATTGGCGTGTGGCTTGGGCGATGCGTTACGGTGCTCCAGC ATTGACAAAGGCGCTAGATGCGCTGCAAGCGCAGCAGGTACGCCGCATCGTGATACTGCCGTTATATCCTCAATATTCGA CCACCACCACGGCCTCAGTACAGGATGTGGTGGAAGCGTGGTGTAAGCGTACTCCCCAAGTGCAGGTTGAATGCATTCAA GACTATGCCGAGGACCCAGCGTGGGTCGCTGCGGTGGCTGCTTCGATCCGTAGGCATTGGCAAGCACATGGCCGCAGTGA GAAGTTGATGTTCTCTTTCCATGGACTGCCGCAGCGTGTGGCCAATAACGGTGATCCCTATCCGCAGCGCTGCCAGGTGA GTGCGTCTTTGATTGCCGCAGCATTGAATTTGAATGAGAGTGAGTGGGTGCTCGGTTATCAGTCGCGCTTTGGTGCTGAG CGTTGGTTACAACCATATGCTGAGCCAACGCTCTGGGCGCTTGCTGAGTCTGGCATACGTCGCTTTGATCTTGTCTGCCC AGGTTTTTCCGTTGATTGCCTGGAAACATTGGAGGAAGTGGCGCTCGGTTTTTCAGAAACGCTGGCAGCGCGTGGTGCAA CGATGCGCTACATTCCCTGTCTCAATGATGACCCTGCACATGTGCAGGCGTTGGCTGGACTGGCGCAACGTGCGTTGCCG TGA
Upstream 100 bases:
>100_bases GCTGAATCGGTAATGAGTGTGACTACGTTCCTTGTGTTATCGGTATGACTTGCCGATTTGCATGCGGCAAGTGAGGTCAC GTTGAGTCACAATAGCACAT
Downstream 100 bases:
>100_bases ATGCAGCAGCGTTCTCAGTGCATTGCCCTGTGTTGTAGTGCAGCGTTGCCAATGCTGCATTTTAGTGCATTTGATGTTGC GGCTGATCAGGGGATGTGCC
Product: ferrochelatase
Products: NA
Alternate protein names: Heme synthase; Protoheme ferro-lyase
Number of amino acids: Translated: 320; Mature: 320
Protein sequence:
>320_residues MNHTSDTALLIVNLGTPEAPTAAAVRRYLGEFLSDRRVVSIPPLFWKPLLHMVILPIRGPRSASKYAKVWLQEGSPLSVY TRRIAEGLTQHLPDWRVAWAMRYGAPALTKALDALQAQQVRRIVILPLYPQYSTTTTASVQDVVEAWCKRTPQVQVECIQ DYAEDPAWVAAVAASIRRHWQAHGRSEKLMFSFHGLPQRVANNGDPYPQRCQVSASLIAAALNLNESEWVLGYQSRFGAE RWLQPYAEPTLWALAESGIRRFDLVCPGFSVDCLETLEEVALGFSETLAARGATMRYIPCLNDDPAHVQALAGLAQRALP
Sequences:
>Translated_320_residues MNHTSDTALLIVNLGTPEAPTAAAVRRYLGEFLSDRRVVSIPPLFWKPLLHMVILPIRGPRSASKYAKVWLQEGSPLSVY TRRIAEGLTQHLPDWRVAWAMRYGAPALTKALDALQAQQVRRIVILPLYPQYSTTTTASVQDVVEAWCKRTPQVQVECIQ DYAEDPAWVAAVAASIRRHWQAHGRSEKLMFSFHGLPQRVANNGDPYPQRCQVSASLIAAALNLNESEWVLGYQSRFGAE RWLQPYAEPTLWALAESGIRRFDLVCPGFSVDCLETLEEVALGFSETLAARGATMRYIPCLNDDPAHVQALAGLAQRALP >Mature_320_residues MNHTSDTALLIVNLGTPEAPTAAAVRRYLGEFLSDRRVVSIPPLFWKPLLHMVILPIRGPRSASKYAKVWLQEGSPLSVY TRRIAEGLTQHLPDWRVAWAMRYGAPALTKALDALQAQQVRRIVILPLYPQYSTTTTASVQDVVEAWCKRTPQVQVECIQ DYAEDPAWVAAVAASIRRHWQAHGRSEKLMFSFHGLPQRVANNGDPYPQRCQVSASLIAAALNLNESEWVLGYQSRFGAE RWLQPYAEPTLWALAESGIRRFDLVCPGFSVDCLETLEEVALGFSETLAARGATMRYIPCLNDDPAHVQALAGLAQRALP
Specific function: Catalyzes the ferrous insertion into protoporphyrin IX
COG id: COG0276
COG function: function code H; Protoheme ferro-lyase (ferrochelatase)
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ferrochelatase family
Homologues:
Organism=Homo sapiens, GI60499025, Length=327, Percent_Identity=28.1345565749235, Blast_Score=104, Evalue=1e-22, Organism=Homo sapiens, GI60499021, Length=327, Percent_Identity=28.1345565749235, Blast_Score=104, Evalue=1e-22, Organism=Escherichia coli, GI1786681, Length=312, Percent_Identity=46.474358974359, Blast_Score=281, Evalue=3e-77, Organism=Drosophila melanogaster, GI17864156, Length=329, Percent_Identity=24.0121580547112, Blast_Score=89, Evalue=3e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): HEMH_XYLF2 (B2I7H7)
Other databases:
- EMBL: CP001011 - RefSeq: YP_001830345.1 - ProteinModelPortal: B2I7H7 - SMR: B2I7H7 - GeneID: 6202585 - GenomeReviews: CP001011_GR - KEGG: xfn:XfasM23_1664 - HOGENOM: HBG697135 - OMA: TIEEIGM - ProtClustDB: PRK00035 - GO: GO:0005737 - HAMAP: MF_00323 - InterPro: IPR001015 - InterPro: IPR019772 - PANTHER: PTHR11108 - TIGRFAMs: TIGR00109
Pfam domain/function: PF00762 Ferrochelatase
EC number: =4.99.1.1
Molecular weight: Translated: 35657; Mature: 35657
Theoretical pI: Translated: 8.13; Mature: 8.13
Prosite motif: PS00534 FERROCHELATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNHTSDTALLIVNLGTPEAPTAAAVRRYLGEFLSDRRVVSIPPLFWKPLLHMVILPIRGP CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCC RSASKYAKVWLQEGSPLSVYTRRIAEGLTQHLPDWRVAWAMRYGAPALTKALDALQAQQV CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHC RRIVILPLYPQYSTTTTASVQDVVEAWCKRTPQVQVECIQDYAEDPAWVAAVAASIRRHW CEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH QAHGRSEKLMFSFHGLPQRVANNGDPYPQRCQVSASLIAAALNLNESEWVLGYQSRFGAE HHCCCCCEEEEEECCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHCCHH RWLQPYAEPTLWALAESGIRRFDLVCPGFSVDCLETLEEVALGFSETLAARGATMRYIPC HHHHHCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCHHHHHHHCCCCEEEECC LNDDPAHVQALAGLAQRALP CCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MNHTSDTALLIVNLGTPEAPTAAAVRRYLGEFLSDRRVVSIPPLFWKPLLHMVILPIRGP CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCC RSASKYAKVWLQEGSPLSVYTRRIAEGLTQHLPDWRVAWAMRYGAPALTKALDALQAQQV CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHC RRIVILPLYPQYSTTTTASVQDVVEAWCKRTPQVQVECIQDYAEDPAWVAAVAASIRRHW CEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH QAHGRSEKLMFSFHGLPQRVANNGDPYPQRCQVSASLIAAALNLNESEWVLGYQSRFGAE HHCCCCCEEEEEECCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHCCHH RWLQPYAEPTLWALAESGIRRFDLVCPGFSVDCLETLEEVALGFSETLAARGATMRYIPC HHHHHCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCHHHHHHHCCCCEEEECC LNDDPAHVQALAGLAQRALP CCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA