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The map label for this gene is ybaV [C]

Identifier: 182682165

GI number: 182682165

Start: 1822926

End: 1823255

Strand: Reverse

Name: ybaV [C]

Synonym: XfasM23_1644

Alternate gene names: 182682165

Gene position: 1823255-1822926 (Counterclockwise)

Preceding gene: 182682168

Following gene: 182682164

Centisome position: 71.9

GC content: 46.97

Gene sequence:

>330_bases
ATGAAATCTTTCGCTATGAGATTGAAGTCTTTGTTGTTGTTGTTTGTCCTTGCTTTTACGGTACATGCGGCTAACAAGGT
CGATATCAACACTGCTTCAGCGGAAGAAATGGATAAGGTATTGGTGAATATTGGCCCCTCTAAGGCCTCGGCCATCGTCA
AGTACCGTGAGGAGAATGGTCCCTTCAAAAGTGTTGAGGAATTGGCGCTAGTCAAAGGAATCGGAATGAAGACGGTTGAA
CGGAATCGTGACCTGATTGAAATTGGCACCAGGATGGCACCTGCTAAACATGCCAAGGGAACGGAGCTGAAGTCGGTGGG
AAAGCGGTAA

Upstream 100 bases:

>100_bases
TTTCCTCAGCCAGTAATGAATACTGGATCGGCTGGTAGAAATACTGGTACGAACTTTTAAATAAAATACTCAAGTCACTC
TTAATGTAAGGGGCGTTGCC

Downstream 100 bases:

>100_bases
GAGGCGCGGAAGGGATACGGTACGATGCATGATGCATGGCCGTTACCTTTCTAGGCAAGATGCCTGGAAGAGGCAAGATG
CCGACATGGAATGTAACGTC

Product: helix-hairpin-helix repeat-containing competence protein ComEA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 109

Protein sequence:

>109_residues
MKSFAMRLKSLLLLFVLAFTVHAANKVDINTASAEEMDKVLVNIGPSKASAIVKYREENGPFKSVEELALVKGIGMKTVE
RNRDLIEIGTRMAPAKHAKGTELKSVGKR

Sequences:

>Translated_109_residues
MKSFAMRLKSLLLLFVLAFTVHAANKVDINTASAEEMDKVLVNIGPSKASAIVKYREENGPFKSVEELALVKGIGMKTVE
RNRDLIEIGTRMAPAKHAKGTELKSVGKR
>Mature_109_residues
MKSFAMRLKSLLLLFVLAFTVHAANKVDINTASAEEMDKVLVNIGPSKASAIVKYREENGPFKSVEELALVKGIGMKTVE
RNRDLIEIGTRMAPAKHAKGTELKSVGKR

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HhH domains [H]

Homologues:

Organism=Escherichia coli, GI1786646, Length=58, Percent_Identity=55.1724137931034, Blast_Score=66, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004509
- InterPro:   IPR003583 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11955; Mature: 11955

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSFAMRLKSLLLLFVLAFTVHAANKVDINTASAEEMDKVLVNIGPSKASAIVKYREENG
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCC
PFKSVEELALVKGIGMKTVERNRDLIEIGTRMAPAKHAKGTELKSVGKR
CHHHHHHHHHHHCCCCHHHHHCCCHHHHHCCCCCCCCCCCCCHHHCCCC
>Mature Secondary Structure
MKSFAMRLKSLLLLFVLAFTVHAANKVDINTASAEEMDKVLVNIGPSKASAIVKYREENG
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCC
PFKSVEELALVKGIGMKTVERNRDLIEIGTRMAPAKHAKGTELKSVGKR
CHHHHHHHHHHHCCCCHHHHHCCCHHHHHCCCCCCCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]