Click here to switch to the map view.

The map label for this gene is scoF [H]

Identifier: 182681990

GI number: 182681990

Start: 1618103

End: 1618306

Strand: Reverse

Name: scoF [H]

Synonym: XfasM23_1465

Alternate gene names: 182681990

Gene position: 1618306-1618103 (Counterclockwise)

Preceding gene: 182681991

Following gene: 182681989

Centisome position: 63.82

GC content: 46.57

Gene sequence:

>204_bases
ATGCAGAGCGGTACAGTTAAGTGGTTTAGTGACCAAAAGGGATTCGGATTTATTTTACCGGATGATGGGACTCCCGAGGT
ATTTGTTCACTATTCGGGGATTAACTCAAAAGGCTTCCGTAGTTTGCATGAAGGCCAGAGAGTTACTTATGACGTGACGC
AGGGCCCGAAGGGTCCCCAAGCATCGAATATCACGCCAATATAA

Upstream 100 bases:

>100_bases
CGCGAGAGTGATTGTCATTTGGACACAAGCTTTGCATACTCAGTCTGTGCGCTAGGGGACGTACATTACTCATTTCAATT
TGAAAAGGTCTCGCATCACC

Downstream 100 bases:

>100_bases
GAAATGTCGCGTAGATGGTGTCAACCATCCTAGTGTTCAATTAAAATTTCACAGTACGCTGTGTGTGCTAAAAAACTTAC
GATTAGCGATTTTGGCGACG

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
MQSGTVKWFSDQKGFGFILPDDGTPEVFVHYSGINSKGFRSLHEGQRVTYDVTQGPKGPQASNITPI

Sequences:

>Translated_67_residues
MQSGTVKWFSDQKGFGFILPDDGTPEVFVHYSGINSKGFRSLHEGQRVTYDVTQGPKGPQASNITPI
>Mature_67_residues
MQSGTVKWFSDQKGFGFILPDDGTPEVFVHYSGINSKGFRSLHEGQRVTYDVTQGPKGPQASNITPI

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=54.6875, Blast_Score=88, Evalue=1e-19,
Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=53.030303030303, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=55.2238805970149, Blast_Score=83, Evalue=3e-18,
Organism=Escherichia coli, GI2367114, Length=65, Percent_Identity=50.7692307692308, Blast_Score=82, Evalue=6e-18,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=54.6875, Blast_Score=82, Evalue=1e-17,
Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=52.3809523809524, Blast_Score=79, Evalue=7e-17,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=48.4848484848485, Blast_Score=75, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7357; Mature: 7357

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSGTVKWFSDQKGFGFILPDDGTPEVFVHYSGINSKGFRSLHEGQRVTYDVTQGPKGPQ
CCCCCEEEECCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCC
ASNITPI
CCCCCCC
>Mature Secondary Structure
MQSGTVKWFSDQKGFGFILPDDGTPEVFVHYSGINSKGFRSLHEGQRVTYDVTQGPKGPQ
CCCCCEEEECCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCC
ASNITPI
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]