Definition | Xylella fastidiosa M23 chromosome, complete genome. |
---|---|
Accession | NC_010577 |
Length | 2,535,690 |
Click here to switch to the map view.
The map label for this gene is 182681989
Identifier: 182681989
GI number: 182681989
Start: 1615000
End: 1617195
Strand: Reverse
Name: 182681989
Synonym: XfasM23_1464
Alternate gene names: NA
Gene position: 1617195-1615000 (Counterclockwise)
Preceding gene: 182681990
Following gene: 182681987
Centisome position: 63.78
GC content: 44.13
Gene sequence:
>2196_bases ATGAAATTAAAATTTCAAAAAAGAAAATTTTTGACTGTAGTTATCGTATTTTCTATGTATGGGGGCAGTGTTGTATATGC GAATGGGAGCGTGCCATCAGTATCAAACAAATATGATTTGGGAACGTTGACAAATGATGGTTCTCAATATTCATATGTTA ATGCTCTCTCAAAGGATGGTAGGGTGGCTGGTGGATTTGTTACTCCTGATGGTAATGAATATATTGCAACTATTTGGTCA TGGAATAATCTCAAGGATACAATTAATATTGGAGCATCTTTTGCGCGTAGTAAAGTGAAAGCATTGTCTGCTGATGGATC AATTGCCGGTGGTTATCAATACATCAGAATTCATGAATCTATTTCGAGTGCCAATTTGGAAAAGAAGGCATCTAATGGAA AGTTTCTAGCCAATGATGATTCAGCTACTTTTATTCCAGTCATTTGGTCTGCTGACTCATGGGAGAATGAAGTCAAGCTT GAATTGGGGATTTTAGAATCCGGAGTGGTTAATGCATTATCTGGGGATGGAAAAACTATTGGTGGGTACGGTTTCTCTAC TCATCTTGTTCCCATTATCTGGTCTGGAAGTCATTGGAAAGATATAAAACAGCTTGATGTACCAAAAGAATATTATGATG CTGAGGTGAAGGCTTTATCCACGGATGGAAAGGTTGCTGGGGGGTATATTAGTTCAAAGAACACTACAAGGGGTATTTTA GAAGGGAAAAGTAGAAATGATATCCAAAATTTTACGCATGCATTTATTTGGTCAGGCGATGGTTTTGGAATAAAAACTGA TTTGGGAACATTGAATAATAATGAATCCGAAGGGGCTGAGGTGAGAGCACTTTCTACTGATGGGAAAGTGGCAGGTGGTT ATTTTTCTATGGAAAATGGCAGTGTTTTTTATGGGGCCATCTGGTCTGGTGATCAATGGACAACGAAAACTCAGCTTGGA ACATTGAAAAGTGATAATTCAGGGAATTCTTTGGTTTATGCACTTTCCGCTGATGGGAAAATCGCTACAGGGTTTGCTGA ATCTGATTCCTCTATAGGGCGTGCCACTGTTTGGTTGGGGGATCACTGGCAAACGAAAATCGATCTGGGAACATTAAAAA GTGATAACTCGGGATATTCCATTGCTACTGCACTCTCTGCAGATGGAACAGTTGCAGCAGGGTATTCTGAAGTAGATTCA GGAAAAGACCATGCCACTGTCTGGAAGATCATTTATCCAACGCAATCTCACTCTGAATCTCAGCCCCAATCCCAACCTAG CGTGGTCAAGGTAGATACTGTCAATACCATAGGTGCCTTATCGGTGTTGGCCGCAGAGACATTTTCAGTTATGGATTTGC AGCGCCAAGGACTCATCCTTCTACAGCAAGGATGTGAGATTGATGACAGCCAGGTCTGCTGGTCTGTGCGTACTGGGCTC GTCTCTACAGGAAGCAATCGGGACAGTGTCGTTGGTTTCAGATTCGGTTATGCCATGTTTGAAACGTTGTCTGCAGGTTT CTCGCTGGACCGTTCACTGTCCCGCTCATTGCAGGACAGTTATTTCAAGAACAATCACAATCTGGGTGCAGGGTTTTATG CACAATGGAATGCTCCCTTTAGGGGAGGTGAATGGTATGTGCGTCCAGCCGTGGCTTTCAATCAGTACAGCGTGGTTGTG CAACGTCCGTTGTTAACAAATACAGAGGCAGGATCCGGTCGCAGTCGTATGAAAGGTCGGGATGCCTCGCTGGAAGCAGG GCAACGTTTCAATGCCGATCAAAGTGTTTTATTGGGGTGGCATCTGGGAGTGCGTCATAGCAGTGTCTTGCGTACTGCAT ACAGCGAGCAGAATGCAGCGTTCCCTGTCAGCTATAGTGCGATCAATAATCGGCGTACTTCTGCGTATGTTGGTGCGGAT GTTGCGGTGCCGCTAACAGCACGTTTGAAATGGATTGCAGGTCTTGAAATTGATAGGAGGCTTTATGGAGATGATCCAGT ATATGGCGGGCATGCTGATTATATTGGTGGCTTTGTACATCAAATGGTTATGAAGCGCGTGATAGGGACAATAAGCAGCG GTGTGGAGTATCGCCTAAGTCCAACCATGTTTTTGGGGGCGACGTTCGATGTCAGCAGGAGGGCACTGGGTGATAGGACC TGGAGTGGGACGTTGAGTTTGGGCGGCCGTTTTTAA
Upstream 100 bases:
>100_bases AATATGAGACTACTTGGGTTGTTACTCTAATTATGCGTTGAGGTATTAATAAAATTTATTAGGTGATTGATAATCTTTAA GAATTCATGGATTATTTGTT
Downstream 100 bases:
>100_bases CAGGGTTATTATTAATACTTAATTTTAGAGCCACATAATGTGGCTCTTTTTTTGGTTTGTGGATGGGTTGAGGAAAATAA ATTTAACCATCGCGGTGGAT
Product: autotransporter beta-domain-containing protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 731; Mature: 731
Protein sequence:
>731_residues MKLKFQKRKFLTVVIVFSMYGGSVVYANGSVPSVSNKYDLGTLTNDGSQYSYVNALSKDGRVAGGFVTPDGNEYIATIWS WNNLKDTINIGASFARSKVKALSADGSIAGGYQYIRIHESISSANLEKKASNGKFLANDDSATFIPVIWSADSWENEVKL ELGILESGVVNALSGDGKTIGGYGFSTHLVPIIWSGSHWKDIKQLDVPKEYYDAEVKALSTDGKVAGGYISSKNTTRGIL EGKSRNDIQNFTHAFIWSGDGFGIKTDLGTLNNNESEGAEVRALSTDGKVAGGYFSMENGSVFYGAIWSGDQWTTKTQLG TLKSDNSGNSLVYALSADGKIATGFAESDSSIGRATVWLGDHWQTKIDLGTLKSDNSGYSIATALSADGTVAAGYSEVDS GKDHATVWKIIYPTQSHSESQPQSQPSVVKVDTVNTIGALSVLAAETFSVMDLQRQGLILLQQGCEIDDSQVCWSVRTGL VSTGSNRDSVVGFRFGYAMFETLSAGFSLDRSLSRSLQDSYFKNNHNLGAGFYAQWNAPFRGGEWYVRPAVAFNQYSVVV QRPLLTNTEAGSGRSRMKGRDASLEAGQRFNADQSVLLGWHLGVRHSSVLRTAYSEQNAAFPVSYSAINNRRTSAYVGAD VAVPLTARLKWIAGLEIDRRLYGDDPVYGGHADYIGGFVHQMVMKRVIGTISSGVEYRLSPTMFLGATFDVSRRALGDRT WSGTLSLGGRF
Sequences:
>Translated_731_residues MKLKFQKRKFLTVVIVFSMYGGSVVYANGSVPSVSNKYDLGTLTNDGSQYSYVNALSKDGRVAGGFVTPDGNEYIATIWS WNNLKDTINIGASFARSKVKALSADGSIAGGYQYIRIHESISSANLEKKASNGKFLANDDSATFIPVIWSADSWENEVKL ELGILESGVVNALSGDGKTIGGYGFSTHLVPIIWSGSHWKDIKQLDVPKEYYDAEVKALSTDGKVAGGYISSKNTTRGIL EGKSRNDIQNFTHAFIWSGDGFGIKTDLGTLNNNESEGAEVRALSTDGKVAGGYFSMENGSVFYGAIWSGDQWTTKTQLG TLKSDNSGNSLVYALSADGKIATGFAESDSSIGRATVWLGDHWQTKIDLGTLKSDNSGYSIATALSADGTVAAGYSEVDS GKDHATVWKIIYPTQSHSESQPQSQPSVVKVDTVNTIGALSVLAAETFSVMDLQRQGLILLQQGCEIDDSQVCWSVRTGL VSTGSNRDSVVGFRFGYAMFETLSAGFSLDRSLSRSLQDSYFKNNHNLGAGFYAQWNAPFRGGEWYVRPAVAFNQYSVVV QRPLLTNTEAGSGRSRMKGRDASLEAGQRFNADQSVLLGWHLGVRHSSVLRTAYSEQNAAFPVSYSAINNRRTSAYVGAD VAVPLTARLKWIAGLEIDRRLYGDDPVYGGHADYIGGFVHQMVMKRVIGTISSGVEYRLSPTMFLGATFDVSRRALGDRT WSGTLSLGGRF >Mature_731_residues MKLKFQKRKFLTVVIVFSMYGGSVVYANGSVPSVSNKYDLGTLTNDGSQYSYVNALSKDGRVAGGFVTPDGNEYIATIWS WNNLKDTINIGASFARSKVKALSADGSIAGGYQYIRIHESISSANLEKKASNGKFLANDDSATFIPVIWSADSWENEVKL ELGILESGVVNALSGDGKTIGGYGFSTHLVPIIWSGSHWKDIKQLDVPKEYYDAEVKALSTDGKVAGGYISSKNTTRGIL EGKSRNDIQNFTHAFIWSGDGFGIKTDLGTLNNNESEGAEVRALSTDGKVAGGYFSMENGSVFYGAIWSGDQWTTKTQLG TLKSDNSGNSLVYALSADGKIATGFAESDSSIGRATVWLGDHWQTKIDLGTLKSDNSGYSIATALSADGTVAAGYSEVDS GKDHATVWKIIYPTQSHSESQPQSQPSVVKVDTVNTIGALSVLAAETFSVMDLQRQGLILLQQGCEIDDSQVCWSVRTGL VSTGSNRDSVVGFRFGYAMFETLSAGFSLDRSLSRSLQDSYFKNNHNLGAGFYAQWNAPFRGGEWYVRPAVAFNQYSVVV QRPLLTNTEAGSGRSRMKGRDASLEAGQRFNADQSVLLGWHLGVRHSSVLRTAYSEQNAAFPVSYSAINNRRTSAYVGAD VAVPLTARLKWIAGLEIDRRLYGDDPVYGGHADYIGGFVHQMVMKRVIGTISSGVEYRLSPTMFLGATFDVSRRALGDRT WSGTLSLGGRF
Specific function: Unknown
COG id: COG5563
COG function: function code S; Predicted integral membrane proteins containing uncharacterized repeats
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 79075; Mature: 79075
Theoretical pI: Translated: 7.43; Mature: 7.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLKFQKRKFLTVVIVFSMYGGSVVYANGSVPSVSNKYDLGTLTNDGSQYSYVNALSKDG CCCCCCHHHHEEEEEEEECCCCEEEEECCCCCCCCCCCCCCEECCCCCCEEEHHHHCCCC RVAGGFVTPDGNEYIATIWSWNNLKDTINIGASFARSKVKALSADGSIAGGYQYIRIHES CEECCEECCCCCCEEEEEEECCCCCHHHHCCHHHHHHHHHEECCCCCCCCCEEEEEEECC ISSANLEKKASNGKFLANDDSATFIPVIWSADSWENEVKLELGILESGVVNALSGDGKTI CCCCCCHHHCCCCCEEECCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCEEECCCCCEE GGYGFSTHLVPIIWSGSHWKDIKQLDVPKEYYDAEVKALSTDGKVAGGYISSKNTTRGIL CCCCCCCCEEEEEECCCCCCHHHHCCCCHHHHCCEEEEEECCCCEECCEECCCCCCCCEE EGKSRNDIQNFTHAFIWSGDGFGIKTDLGTLNNNESEGAEVRALSTDGKVAGGYFSMENG CCCCCCHHHHCCEEEEECCCCCEEEEECCCCCCCCCCCCEEEEEECCCCEECCEEEECCC SVFYGAIWSGDQWTTKTQLGTLKSDNSGNSLVYALSADGKIATGFAESDSSIGRATVWLG CEEEEEEECCCCEEEHEECCEEECCCCCCEEEEEEECCCEEEEEECCCCCCCCEEEEEEC DHWQTKIDLGTLKSDNSGYSIATALSADGTVAAGYSEVDSGKDHATVWKIIYPTQSHSES CCCEEEEEEEEEECCCCCEEEEEEECCCCCEEECCHHCCCCCCCEEEEEEEECCCCCCCC QPQSQPSVVKVDTVNTIGALSVLAAETFSVMDLQRQGLILLQQGCEIDDSQVCWSVRTGL CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHEEECCCE VSTGSNRDSVVGFRFGYAMFETLSAGFSLDRSLSRSLQDSYFKNNHNLGAGFYAQWNAPF EECCCCCCCEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC RGGEWYVRPAVAFNQYSVVVQRPLLTNTEAGSGRSRMKGRDASLEAGQRFNADQSVLLGW CCCCEEEEEEEEECCEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEEEE HLGVRHSSVLRTAYSEQNAAFPVSYSAINNRRTSAYVGADVAVPLTARLKWIAGLEIDRR EECCCHHHHHHHHHCCCCCCCEEEEHHHCCCCCEEEECCCEEEEHHHEEEEEECCEECCE LYGDDPVYGGHADYIGGFVHQMVMKRVIGTISSGVEYRLSPTMFLGATFDVSRRALGDRT ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCHHHHHHCCCC WSGTLSLGGRF CCCEEECCCCC >Mature Secondary Structure MKLKFQKRKFLTVVIVFSMYGGSVVYANGSVPSVSNKYDLGTLTNDGSQYSYVNALSKDG CCCCCCHHHHEEEEEEEECCCCEEEEECCCCCCCCCCCCCCEECCCCCCEEEHHHHCCCC RVAGGFVTPDGNEYIATIWSWNNLKDTINIGASFARSKVKALSADGSIAGGYQYIRIHES CEECCEECCCCCCEEEEEEECCCCCHHHHCCHHHHHHHHHEECCCCCCCCCEEEEEEECC ISSANLEKKASNGKFLANDDSATFIPVIWSADSWENEVKLELGILESGVVNALSGDGKTI CCCCCCHHHCCCCCEEECCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCEEECCCCCEE GGYGFSTHLVPIIWSGSHWKDIKQLDVPKEYYDAEVKALSTDGKVAGGYISSKNTTRGIL CCCCCCCCEEEEEECCCCCCHHHHCCCCHHHHCCEEEEEECCCCEECCEECCCCCCCCEE EGKSRNDIQNFTHAFIWSGDGFGIKTDLGTLNNNESEGAEVRALSTDGKVAGGYFSMENG CCCCCCHHHHCCEEEEECCCCCEEEEECCCCCCCCCCCCEEEEEECCCCEECCEEEECCC SVFYGAIWSGDQWTTKTQLGTLKSDNSGNSLVYALSADGKIATGFAESDSSIGRATVWLG CEEEEEEECCCCEEEHEECCEEECCCCCCEEEEEEECCCEEEEEECCCCCCCCEEEEEEC DHWQTKIDLGTLKSDNSGYSIATALSADGTVAAGYSEVDSGKDHATVWKIIYPTQSHSES CCCEEEEEEEEEECCCCCEEEEEEECCCCCEEECCHHCCCCCCCEEEEEEEECCCCCCCC QPQSQPSVVKVDTVNTIGALSVLAAETFSVMDLQRQGLILLQQGCEIDDSQVCWSVRTGL CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHEEECCCE VSTGSNRDSVVGFRFGYAMFETLSAGFSLDRSLSRSLQDSYFKNNHNLGAGFYAQWNAPF EECCCCCCCEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC RGGEWYVRPAVAFNQYSVVVQRPLLTNTEAGSGRSRMKGRDASLEAGQRFNADQSVLLGW CCCCEEEEEEEEECCEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEEEE HLGVRHSSVLRTAYSEQNAAFPVSYSAINNRRTSAYVGADVAVPLTARLKWIAGLEIDRR EECCCHHHHHHHHHCCCCCCCEEEEHHHCCCCCEEEECCCEEEEHHHEEEEEECCEECCE LYGDDPVYGGHADYIGGFVHQMVMKRVIGTISSGVEYRLSPTMFLGATFDVSRRALGDRT ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCHHHHHHCCCC WSGTLSLGGRF CCCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA