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The map label for this gene is smpB

Identifier: 182681988

GI number: 182681988

Start: 1614296

End: 1614799

Strand: Direct

Name: smpB

Synonym: XfasM23_1463

Alternate gene names: 182681988

Gene position: 1614296-1614799 (Clockwise)

Preceding gene: 182681985

Following gene: 182681996

Centisome position: 63.66

GC content: 52.58

Gene sequence:

>504_bases
ATGAACAACAAACATCCCAAGAATAAAGCAAAGAGCACAACAACTCCAAAAACCATCGCTCTGAACAAACGTGCACGTCA
TGAATACCATCTGATTGAACGCCATGAAGCCGGTCTGGAACTGCAAGGCTGGGAAGTCAAAGCAATCCGTGCTGGCCGTG
CCAACCTTGGCGACGGCTATGCCTACGTGCGCGACGGCGAAATCTTTCTCATCGGTGCCCAAATCACTCCGCTCATCCAA
GCATCCACCCACGTTGTCGCCAACGACCGCCGTACCCGCAAACTACTGCTGCACCGCCACCAAATCGACACACTGATCGG
ACGAGTACAACGTGAAGGCTTCACCCTGGTCCCAACTGCGATGTACTGGAGCAAAAATCGAGTCAAAATGGAGATTGCTC
TAGCCAAAGGTAAACAGGCCCATGACAAGCGCCATGCAGAGAAAGAACGCGAATGGCAACGCGACAAACAGAGGATCATG
CGGGCCCATAATCGCAACGCATGA

Upstream 100 bases:

>100_bases
TGTGGCAGACCAAAGCGCTGCGGCAAATAATAGGCATAACATTAGGCGTGACAAACGGACAGATTCGTTCACAAGAACTC
TATTCTGGGACAATAGCCGC

Downstream 100 bases:

>100_bases
CACCGAACAAGTATCAAAACAATCAAAATATGAAGTATCACTGAATATAAACGAAGCCAAAAATAAATCGCATCATCTAA
CCCATTGCAACAACGGTCAC

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MNNKHPKNKAKSTTTPKTIALNKRARHEYHLIERHEAGLELQGWEVKAIRAGRANLGDGYAYVRDGEIFLIGAQITPLIQ
ASTHVVANDRRTRKLLLHRHQIDTLIGRVQREGFTLVPTAMYWSKNRVKMEIALAKGKQAHDKRHAEKEREWQRDKQRIM
RAHNRNA

Sequences:

>Translated_167_residues
MNNKHPKNKAKSTTTPKTIALNKRARHEYHLIERHEAGLELQGWEVKAIRAGRANLGDGYAYVRDGEIFLIGAQITPLIQ
ASTHVVANDRRTRKLLLHRHQIDTLIGRVQREGFTLVPTAMYWSKNRVKMEIALAKGKQAHDKRHAEKEREWQRDKQRIM
RAHNRNA
>Mature_167_residues
MNNKHPKNKAKSTTTPKTIALNKRARHEYHLIERHEAGLELQGWEVKAIRAGRANLGDGYAYVRDGEIFLIGAQITPLIQ
ASTHVVANDRRTRKLLLHRHQIDTLIGRVQREGFTLVPTAMYWSKNRVKMEIALAKGKQAHDKRHAEKEREWQRDKQRIM
RAHNRNA

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=148, Percent_Identity=60.1351351351351, Blast_Score=188, Evalue=2e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_XYLF2 (B2I6G4)

Other databases:

- EMBL:   CP001011
- RefSeq:   YP_001830148.1
- ProteinModelPortal:   B2I6G4
- SMR:   B2I6G4
- GeneID:   6202429
- GenomeReviews:   CP001011_GR
- KEGG:   xfn:XfasM23_1463
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 19394; Mature: 19394

Theoretical pI: Translated: 11.27; Mature: 11.27

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNKHPKNKAKSTTTPKTIALNKRARHEYHLIERHEAGLELQGWEVKAIRAGRANLGDGY
CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCEECCCEEEEEECCCCCCCCCE
AYVRDGEIFLIGAQITPLIQASTHVVANDRRTRKLLLHRHQIDTLIGRVQREGFTLVPTA
EEEECCCEEEECCCCCEEHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEH
MYWSKNRVKMEIALAKGKQAHDKRHAEKEREWQRDKQRIMRAHNRNA
EEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNNKHPKNKAKSTTTPKTIALNKRARHEYHLIERHEAGLELQGWEVKAIRAGRANLGDGY
CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCEECCCEEEEEECCCCCCCCCE
AYVRDGEIFLIGAQITPLIQASTHVVANDRRTRKLLLHRHQIDTLIGRVQREGFTLVPTA
EEEECCCEEEECCCCCEEHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEH
MYWSKNRVKMEIALAKGKQAHDKRHAEKEREWQRDKQRIMRAHNRNA
EEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA