| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is pgsA [H]
Identifier: 182681940
GI number: 182681940
Start: 1569486
End: 1570115
Strand: Direct
Name: pgsA [H]
Synonym: XfasM23_1411
Alternate gene names: 182681940
Gene position: 1569486-1570115 (Clockwise)
Preceding gene: 182681939
Following gene: 182681943
Centisome position: 61.9
GC content: 48.57
Gene sequence:
>630_bases ATGAAATTGACCGTCCCCACTTGGTTAACGCTGCTACGGATCGTGATGATCCCTGTGCTCATTGTGGTGTTCTATCTACC TTATCAATGGAGCAATATTGTCGCTACGGGAGTGTTTGCGATCGCTGCAATTACCGACTGGCTTGATGGATGGATCGCAC GTCGTTACGCGCAACATTCGTTATTGGGTGCGTTTTTAGACCCAGTTGCGGACAAATTGATGGTGGCCATCGCATTATTT CTCATTGTGCAAGGTCACCCGACACCGTCGATGGCATTTTGGGCAGCAGTGATCGTTAGTCGTGAAATTGCAGTGTCAGC ATTGCGTGAGTGGATGGCCGAAATTGGTCATCGTGCCAAGGTGCGTGTAGCTGTCCTTGGCAAAGTGAAGACGACGGCTC AAATGATTGCGGTACTGTGTCTGCTCTATTCGGTGACACCCGAGAAGAAGGCGATCCATCAAATATGGTTTGGCCACTTG ATCTTCCAAGTCGGTTATTGGACATTGCTGATTTCCGCGTTACTGACACTGTGGTCTGGTTTCCAGTATTTGCACGCTGC CTGGCCTAGTTTACGTACCGGAAAACCTGTAGTGATTAAAACGCACATCAGCAAGAACCGACAAAATTAA
Upstream 100 bases:
>100_bases TTGCCAGGGTGGAAGGCATCAGTACTGCGCTGGCAGCCAAGATTTACGCCAGCCTGCATGGACTATCGAAAAATGATGCA GCAAATGCGTCGAGGGTGTC
Downstream 100 bases:
>100_bases TAGTTGACAGCATTCGTCAAGCGTGTAGGATTTCGTGGCCCAAGCGGGAATAGCTCAGTTGGTAGAGCGCAACCTTGCCA AGGTTGAGGTCGCGAGTTCG
Product: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
Products: NA
Alternate protein names: Phosphatidylglycerophosphate synthase; PGP synthase [H]
Number of amino acids: Translated: 209; Mature: 209
Protein sequence:
>209_residues MKLTVPTWLTLLRIVMIPVLIVVFYLPYQWSNIVATGVFAIAAITDWLDGWIARRYAQHSLLGAFLDPVADKLMVAIALF LIVQGHPTPSMAFWAAVIVSREIAVSALREWMAEIGHRAKVRVAVLGKVKTTAQMIAVLCLLYSVTPEKKAIHQIWFGHL IFQVGYWTLLISALLTLWSGFQYLHAAWPSLRTGKPVVIKTHISKNRQN
Sequences:
>Translated_209_residues MKLTVPTWLTLLRIVMIPVLIVVFYLPYQWSNIVATGVFAIAAITDWLDGWIARRYAQHSLLGAFLDPVADKLMVAIALF LIVQGHPTPSMAFWAAVIVSREIAVSALREWMAEIGHRAKVRVAVLGKVKTTAQMIAVLCLLYSVTPEKKAIHQIWFGHL IFQVGYWTLLISALLTLWSGFQYLHAAWPSLRTGKPVVIKTHISKNRQN >Mature_209_residues MKLTVPTWLTLLRIVMIPVLIVVFYLPYQWSNIVATGVFAIAAITDWLDGWIARRYAQHSLLGAFLDPVADKLMVAIALF LIVQGHPTPSMAFWAAVIVSREIAVSALREWMAEIGHRAKVRVAVLGKVKTTAQMIAVLCLLYSVTPEKKAIHQIWFGHL IFQVGYWTLLISALLTLWSGFQYLHAAWPSLRTGKPVVIKTHISKNRQN
Specific function: This protein catalyzes the committed step to the synthesis of the acidic phospholipids [H]
COG id: COG0558
COG function: function code I; Phosphatidylglycerophosphate synthase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CDP-alcohol phosphatidyltransferase class-I family [H]
Homologues:
Organism=Homo sapiens, GI188536108, Length=153, Percent_Identity=32.6797385620915, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI10092647, Length=151, Percent_Identity=32.4503311258278, Blast_Score=64, Evalue=9e-11, Organism=Escherichia coli, GI1788220, Length=187, Percent_Identity=47.0588235294118, Blast_Score=164, Evalue=3e-42, Organism=Saccharomyces cerevisiae, GI6320059, Length=217, Percent_Identity=32.258064516129, Blast_Score=68, Evalue=8e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000462 - InterPro: IPR004570 [H]
Pfam domain/function: PF01066 CDP-OH_P_transf [H]
EC number: =2.7.8.5 [H]
Molecular weight: Translated: 23527; Mature: 23527
Theoretical pI: Translated: 10.66; Mature: 10.66
Prosite motif: PS00379 CDP_ALCOHOL_P_TRANSF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLTVPTWLTLLRIVMIPVLIVVFYLPYQWSNIVATGVFAIAAITDWLDGWIARRYAQHS CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLGAFLDPVADKLMVAIALFLIVQGHPTPSMAFWAAVIVSREIAVSALREWMAEIGHRAK HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE VRVAVLGKVKTTAQMIAVLCLLYSVTPEKKAIHQIWFGHLIFQVGYWTLLISALLTLWSG EHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FQYLHAAWPSLRTGKPVVIKTHISKNRQN HHHHHHHCCCCCCCCCEEEEECCCCCCCC >Mature Secondary Structure MKLTVPTWLTLLRIVMIPVLIVVFYLPYQWSNIVATGVFAIAAITDWLDGWIARRYAQHS CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLGAFLDPVADKLMVAIALFLIVQGHPTPSMAFWAAVIVSREIAVSALREWMAEIGHRAK HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE VRVAVLGKVKTTAQMIAVLCLLYSVTPEKKAIHQIWFGHLIFQVGYWTLLISALLTLWSG EHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FQYLHAAWPSLRTGKPVVIKTHISKNRQN HHHHHHHCCCCCCCCCEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA